Array 1 116121-117978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFN010000005.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 50772 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116121 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 116182 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 116243 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 116304 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 116365 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 116426 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 116487 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 116548 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 116609 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 116670 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 116731 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 116792 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 116853 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 116914 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 116975 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 117036 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 117097 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 117158 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 117219 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 117280 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 117341 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 117402 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 117463 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 117524 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 117585 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 117646 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 117707 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 117768 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 117829 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 117890 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 117951 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134650-136753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFN010000005.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 50772 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134650 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 134711 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 134772 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 134833 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 134894 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 134955 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 135016 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 135077 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 135138 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 135199 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 135260 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 135321 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 135382 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 135443 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 135504 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 135565 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 135626 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 135687 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 135748 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 135809 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 135870 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 135931 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 135992 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 136053 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 136114 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 136175 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 136236 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 136297 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 136358 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 136419 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 136480 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 136541 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 136602 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 136663 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 136724 29 100.0 0 ............................. | A [136751] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //