Array 1 428957-429718 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVFI01000009.1 Streptococcus agalactiae strain S13-156 S13-156_Contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 428957 36 100.0 30 .................................... AAAGGAAATTTTTCGGTATACATAACAAAA 429023 36 100.0 30 .................................... AGACATTTACCTTTTACACTTGAGTCACAT 429089 36 100.0 30 .................................... ACTAGATTTAAGACAAGAAAACGAACAGAT 429155 36 100.0 30 .................................... AAAACATGTTAAAGAAAATGATTTGACACA 429221 36 100.0 30 .................................... TTCAAGAATAAGAGCAACCACTACTATCCT 429287 36 100.0 30 .................................... CAATTGATCCTCTGTCTCTACATATGCAAA 429353 36 100.0 30 .................................... TAATGGTTAAGCCGCGATTTGGAATTTCTA 429419 36 100.0 30 .................................... AGAAGTTATCTCTGTTAACACACAAACAAA 429485 36 100.0 30 .................................... TAATGATCTTATTTGAGGAACAACGAGACA 429551 36 100.0 30 .................................... AACATTTTTTTATGATGGGGGTAACCTTAA 429617 36 100.0 30 .................................... TTTTCAGCTGAGGAAGTAATCTTTTCTTCT 429683 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TCAGGAGATTGTGTGTACTCACGAATTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 58-555 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVFI01000010.1 Streptococcus agalactiae strain S13-156 S13-156_Contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 58 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 124 36 100.0 30 .................................... GAATGAAGCAGGTATCAAGGATTATACTTA 190 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 256 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 322 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 388 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 454 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 520 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CTGTGCTGTTTCGAATGGTTCCAAAACTTTTCAGCTGAGGAAGTAATCTTTTCTTCTG # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //