Array 1 1980216-1984924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024180.2 Moraxella osloensis strain KSH chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1980216 28 100.0 32 ............................ TTGCCAGTCATGCATCCTCACATGACTGGCTT 1980276 28 100.0 32 ............................ TTTGCTTACTGTGACGATGTTTTTTAAATTTT 1980336 28 100.0 33 ............................ ACCGCCCCAATCAAACAGCGTGATATTTCTTGC 1980397 28 100.0 32 ............................ TTACAAATTTTAGTCAACAAAAAAGCCACTGG 1980457 28 100.0 32 ............................ AGTCATGTGAGGATGCATGACTGGCAAGGTAG 1980517 28 100.0 32 ............................ TCAATCCGACACACATCGCTGGCTGAGCCATT 1980577 28 100.0 32 ............................ ATGCTGGCATTGGTGATCAATGCTGACAGTCG 1980637 28 100.0 32 ............................ CATCACGCTTGACCAATTCGGACTGTCCGCTA 1980697 28 100.0 32 ............................ AACGTGCCAGCGGTTGAAGCTGCTAGGGTCAA 1980757 28 100.0 32 ............................ ATCGCCAAACGTCATCACGCGCACGTTTACAC 1980817 28 100.0 32 ............................ ACCAATCAGGATAATGACCAAGTGCATGAATA 1980877 28 100.0 32 ............................ CTGTGAGAGTGCTGGCAGGATTACTTGATTGA 1980937 28 100.0 32 ............................ AAACATACCAATATGAGCCGCGAGATAAAGCG 1980997 28 100.0 32 ............................ TATGATGCCCTGCCGATAAGCGACCGACCGAC 1981057 28 100.0 32 ............................ CAGGGCGTGAGTTAGTTCTCATGCTCTTGGGT 1981117 28 100.0 32 ............................ CAAAACAGGCTTGTTGTCTGCGTCAAGTAAGC 1981177 28 100.0 32 ............................ ATTCATCAATAGAATTGTCGCATACGTGTGCC 1981237 28 100.0 32 ............................ TTGCCAACTGGTGAGGTTTTAGCGAAAGGCGA 1981297 28 100.0 32 ............................ TTTTAACCGTTGATGAAACTAGCGAAGATACC 1981357 28 100.0 32 ............................ AATAATAGATGCGCCTAGATAGCGTCTTGGGG 1981417 28 100.0 32 ............................ AAAGACAGTGGGCGCTCAATTACTGCCGAACT 1981477 28 100.0 32 ............................ AAAAAGCGCGGGTCGATGATTTCGCCGTCACG 1981537 28 100.0 32 ............................ AAACCGAGCAAAGCAAAGGCTTACTCGCTAGT 1981597 28 100.0 32 ............................ ATTAGCGGCAACGTGCGACTCAAAGACGGTAA 1981657 28 100.0 32 ............................ TATGCCCTAACAACTCTTTAACCGTATAAATG 1981717 28 96.4 32 ......G..................... AAAATGATATGCAGACGTTTGCCGACCAGCTA 1981777 28 100.0 32 ............................ AGTTTGCGGTCAACAAAGTGCAGTTTGGTGAC 1981837 28 100.0 32 ............................ TGTACCAGATTCGGCTTTGGACAACATAGTGC 1981897 28 100.0 32 ............................ ACAGCACAAATACTGAACGGTTCGTGCCTGCT 1981957 28 96.4 32 ..............G............. TCCTAAAATTTTTACGCACGCGAAATTAAAAG 1982017 28 100.0 32 ............................ ATTGCCGCGCGAAATTCCACGGCTTCAAGTTC 1982077 28 100.0 32 ............................ AACGATGCACCACATCATCGACAAGTAAATAT 1982137 28 100.0 32 ............................ AAGAATTACCCGAACATGAATTACCCCCGCAG 1982197 28 100.0 32 ............................ GAACTGCTCAATGCTCAACTTCCGCATAAAAC 1982257 28 100.0 32 ............................ ACTCTGGTAAAGGCATTCACGCCACATTAAAC 1982317 28 100.0 32 ............................ TAATCGTGAAGAAGTGCCTAAAACGCTTATTT 1982377 28 100.0 32 ............................ ATACGCGATTACGAACGAACTCAGATGAGTAA 1982437 28 100.0 32 ............................ AATGACTGACGCAGTGATTAAGCGACCACAAA 1982497 28 100.0 32 ............................ TCTTTAAACTTTATTTCACACTTCACCGACTC 1982557 28 100.0 32 ............................ AAAATCTAAGTGTGGGGCTATGTTTTGCGTGA 1982617 28 100.0 32 ............................ TAGAAAAGATAATGCGATATCTGAACCGCCCT 1982677 28 100.0 32 ............................ AGTAATAGAGTTAAAAAAATGCAATTTATAAA 1982737 28 100.0 32 ............................ ACCAATCACAGGCAATAAAGAGTTTGTCTTTC 1982797 28 100.0 32 ............................ TTGATGCTGCTTAACAATGTCAATGGCTTCTT 1982857 28 100.0 32 ............................ TTGGCGCGCTGGGCATTATTCTGCGCATTAAC 1982917 28 100.0 32 ............................ ATTATAGATAGGCAAGTCAAAACGTGCTGGAT 1982977 28 100.0 32 ............................ GGCCACGCGGTTAGCAATAGCGGTATCGATAT 1983037 28 100.0 32 ............................ TAGCAATAATTGACCTTCTGAAAACTTAGCCC 1983097 28 100.0 32 ............................ TTGATAACTTTCTTCAGTTTCTTGAATATTAT 1983157 28 100.0 32 ............................ TATGTGAGCGGCGGCGGTGTCATCTTGGAGTT 1983217 28 100.0 32 ............................ GTTTGCCAAATACCCACAACTCATCAATCAGC 1983277 28 100.0 32 ............................ GAGAACCTACTAGCAGTCGGTCAAGTCGTGCT 1983337 28 100.0 32 ............................ TAACAAAACGCGCAAATCCACTGGTGTTAGCA 1983397 28 100.0 32 ............................ AATCAAAACAGCACCAGCGATGCCCCACATTA 1983457 28 100.0 32 ............................ TCCGCCTTTTCGGGTAACTCAAATTGCACTGG 1983517 28 100.0 32 ............................ AATCAAAACAGCACCAGCGATGCCCAACATTA 1983577 28 100.0 32 ............................ ATGATGTACCAGTGCCACAGCCATGCGTAGCG 1983637 28 100.0 32 ............................ AAAAGGAGTCTAAACGCCTTGAGCCGCTAGGC 1983697 28 100.0 32 ............................ AACAACGCCAGTCATCGCGTGAGTTTTTTGCT 1983757 28 100.0 32 ............................ AACATACACAAGCATACAATAAAAAAGCCCAA 1983817 28 100.0 32 ............................ TTCGTCATTCACGGCTTGAAATGCACCACTAA 1983877 28 100.0 32 ............................ ACTACTGACCACTAAAGCGGTGCATTTTAAAA 1983937 28 100.0 32 ............................ ATTGACTAGCAATAACTCTGCATTGCTAGCCG 1983997 28 100.0 32 ............................ TGCTATGGCGTTATGTGCTAACTCGTACAAAG 1984057 28 100.0 32 ............................ TTGTCCTGGGCGTAGCGTGCCAGGACATGAAC 1984117 28 100.0 32 ............................ AAGCTATGAGTGGGGCGAATAACCATAGCAGC 1984177 28 100.0 32 ............................ TAAGCGAGCGTTCAGCCACTCGCTAGTACCTT 1984237 28 100.0 32 ............................ CATATCTAAATTTTTGTGGTTATAAAGCCCAA 1984297 28 100.0 32 ............................ GTTTAGCATCATGCAGCGTATGGGCAATCAAG 1984357 28 100.0 32 ............................ AAGTTTGAAGCCCAGCGACATGAAGCAAAAAA 1984417 28 100.0 32 ............................ AAAAGAGGACGGTTCATGCGGTGAATGTTGTG 1984477 28 100.0 32 ............................ TATCAAAATCGTGCGAATCACTTACAGTTTTT 1984537 28 100.0 32 ............................ TACTTGCATGAGTGCCAATCCAATTTGATAAA 1984597 28 100.0 32 ............................ GTAACCACGACAGCAAGGGGCGACAATCCGCG 1984657 28 100.0 32 ............................ TTAACCGTATAAATGCTAACAGAGCCTTGAAC 1984717 28 100.0 32 ............................ AATGCCCCCTTGAGCCAACCGAAGAAGCAGGG 1984777 28 100.0 32 ............................ GCTATGACGTGGTTAACGGTCAAGTATTGGCA 1984837 28 100.0 32 ............................ ATGGTTGACCATGAATCTCAAGCGACATTCAA 1984897 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 79 28 99.9 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCGCTGGGCAAAGGTATTATATAAAAGCTTGGCGGAAGGCTGTGGCTTTAAATTTACCCGCGAGGAAGGCAAAAATGCCAATGATGATATCGCCGATATCGCCAATAGCTACCTTGACCACGGGAATTATATCGCTTATGGCTATGCGGCAGTTGCATTACATGGGTTAGGTATTAGCTTTGCTCTACCGATGCTACATGGTAAAACCCGCCGTGGTGGTTTGGTGTTTGATGTAGCAGATTTGGTCAAAGATGCGATGGTGATGCCACAAGCATTTATTTCGGCAAAACTGGGGCATAATCAAAAAGAGTTTCGGATGCAACTTATCGAGATTTGCCAAGACCAAGATGTGTTGGATTATATGTTTGGCTTCGTTGTAGACACTTGCCAAAAAATTAAATAAAATCAGCTGCTTATAAAAAGCACTTTAAAACGAAGTGTCTTGACTGAATTAAAACGTATATAATTGATATCTGGGGATTTTGTCAGAAAATTCTCCA # Right flank : AATTTTCTCGTCTCGCGTTACAAAATACCGCTTCGTTGTAAGCATCCGACCATCCCATCTACCACCATTCTAAAAAATACGAGATAGTGCCCACTAAAAAATGAAGTGGGCACTAGAATGGCACAAATAGACATAACCAAACCGAAGCGACGAACGTACAGCAAAGAGCTCAAAGCCTATCTCGTAGAACAAGCCTTAACAGGCGAACGCTCGATAGCGAGGCTAGCTCAAGGTTATGGCATTAACCCAAACTTATTGCAGAAATGGATAAAAGCTGCCAGAGACGAGAAAATCGCAGCAACTCAACCATTAGCCAACCCAAACTTCGATATTAACCTCATTGAACATGAGCCTGTCTTTCTGCCTATCACCCTGCAATCTAGAAGCCATCACGAACAAACACCACAAGCAACTGCCTTAGCTCAAACCATCACAGGCGTAGAACTACAAATTCCCAGCCACAACACAATGCCCATAAAACTCACCATCGACCAAATCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1987676-1988783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024180.2 Moraxella osloensis strain KSH chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1987676 28 100.0 32 ............................ AATGGCGAAATTCAACCCAGATGATTGTAAAT 1987736 28 100.0 32 ............................ AACCACACAGCACTCAGCAATCCAATCACTCA 1987796 28 100.0 32 ............................ TACAGTCAAATACAAAGACCGCCGTTAACAGA 1987856 28 100.0 32 ............................ AGTTATGACGATTACAGCATAGTAAAAAAGAT 1987916 28 100.0 32 ............................ TTATCGCCTGTCTGCGTCGTCTTGGTGTTTTT 1987976 28 100.0 32 ............................ AAGACAAAAAAACTGGTTTAGTAACCAAAATC 1988036 28 100.0 32 ............................ AGATACCCCGTTTGACCCAACTAGCATAATAG 1988096 28 100.0 32 ............................ AACTCCTGCACATTGGCAAAGTCAGCAAACAA 1988156 28 100.0 32 ............................ GCCACGTCGAACAGCAAAACGTTGACCTCAAG 1988216 28 100.0 32 ............................ TGACTGGGATGAAATTCGCGCAGTATTACCGA 1988276 28 100.0 32 ............................ TTCATCAAGCATCTTTTTAACCTGGCTTACTA 1988336 28 100.0 32 ............................ GTTATCTGTGACCAAAATTTTGATTGGACAAA 1988396 28 100.0 32 ............................ CACATTGCCAAGCCCAACTGCTAAAACCTAAT 1988456 28 100.0 32 ............................ TATCAAATGCAGTGCTGTGTATATCGCAATCG 1988516 28 100.0 32 ............................ CTGTACCATTATTAGTATTAACTGCTAATAAC 1988576 28 100.0 32 ............................ TTAGTTTTTCGGTTGTTTCGTGGATTGTGTAG 1988636 28 100.0 32 ............................ CACAGATTAAGGATAAAGATGATGATAACCGC 1988696 28 100.0 32 ............................ TTCAACGTCACAGTCACAAGACCAGTCGATTT 1988756 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : ACGGGAGATTGATGAGCGGTTTGAGAAAAACCAAACCCCACTGCCCAGAGATGCTCAAATAGTTAGGCAAGTCAGGCAAGAGAAGGCAAAACCAGTTGCGGATAAACTTTATGCGTGGTTACAACAGAAACGCTTAGGCACGACTAAGAATGCCAGTATTACTAAGGCAATTGAGTATTGTTTGAAACGCTGGACGGCGTTAACTCACTATTTGGATGATGGCAATTTGCCGATTGATAATAATTGGGCAGAGAATCAGATGCGCCCTTGGGCTCTCGGGCGTAAGAATTGGTTGTTCGCAGGGTCGCTTGAGAGCGGTCAGCGGGCGGCTAGTATTATGTCGCTTATCCAGTCAGCTAGATTGAATGGTCTTGACCCGTATGCGTATTTGGCAGATGTGTTGAGTCGTCTGCCGACGCATCCTGATAGCCAGATTGATGAGCTGCTACCACATGTCTGGATACCACCTCAATAGGTGTATGGTCGGGGGCTTACGCTTC # Right flank : AATGGTTGACCATGAATCTCAAGCGACATTCAAGTTCGCCTAAGGTACTCCCCAATGTCTAGACCAAATAATCACAAAATTAAGATAGAATTGGGTTGATAAAGCACAGTATTAACCGAACTATTGTTATCTAAATAAACCTGTGCAGGGGTATAATATCGAGCGACTGATGCAATCGCTCATAGTTGTAAAACTCAAAATAGTCTTTCAAACCAACTCTGGCTTGACTGACTGTATCAAACTGGCGTAAATACACGCACTCGTATTTTACTGACCGCCAAAGCCTTTCCACAAAGATATTGTCCAACGCCCTGCCACGACCGTCCATGCTTACAGCAATGCCCGAATCAATGAGTGGCGTGGTAAATCTTGGACTGGTAAACTGCGAGCCTTGATCCGTATTAAAAATCTCACAGCGTAACCCATTGTGCAGTAGTTTACCCACCGTATCAATGCAGAAATCTGCCTCAAGCGTGGTAGATAGCGACCAACCTAAAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1990093-1990360 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024180.2 Moraxella osloensis strain KSH chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1990093 28 89.3 32 TA.A........................ GCCATGGCTTCAATGATTCTATAGTCCCCCGT 1990153 28 100.0 32 ............................ ATTGACGATATCAAAATCCAAAACTATCAACA 1990213 28 100.0 32 ............................ AACGATGCACCACATCATCGACAAGTAAATAT 1990273 28 100.0 32 ............................ GATGTTATCCGGTTTAGTATCCGCCGTAAAAC 1990333 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCATCAGGGTGATATCAAGCTCGCTGATGGGCTTTGGCTGATAGTACAGGCTTGAGCGGTTAATACCAAGCAGTTTACATTGCTTACGGGTACTAAAATCTTTACTATCAGGCTCTAGTAGTTGTTTACGAGACTCTAAGTGAGCTGTGAGGACTTTTTTTTAAGCCAGTCTCTCTCACTAATGACTTGCCCCAGTTGCCGATGCAGTTCATCGATAATGGCTTGCTGGGCTTGTTCGTTATCTTGCTGTTTGGTGTTAAAGGCGGTTGGTATGACAGCCAAGGCTTGCTTTTTCCAGTTGCTGATTTGGGTTGCATGAACACCGTATTCAGCAGTCAGCTCATTGATCGTTTTTTGCTCTTTAATTGCTTCAACAGCAACTTTGCTTTTGAATTCAGCATTATGACGTTTACGAACTTTTGTCATTAGATAGACCTCTTTTCTTAAGGGCTATTCTATCTTATTTGCTACGAATTTTTGGTCTAGTTTTCGGGGAGTAT # Right flank : ATCGCGCTGCAATGAGTAGTCAGTCACTTCAAGGTTCGCCATCGCATAGATTATAATACTCCCCAAAAACTAGACCAAAAAATCGTGGTAAATAAGATAGAATAGCCCTTAAGCAAAGAGGTCTATCTAATGACAAAAGTTCGTAAACGTCACAATGCTGAATTTAAAAGCAAAGTTGCCATTGAAGCCATCAAAGAGCACAAGACTATCAACGAATTAACCGCAGAATATGGCGTGCATGCAACCCAAATCAGCAACTGGAAAAAGCAAGCTTTGGCTGTTATACCCAGTGCCTTTAACACCAAACAGCATAACAACGAACAAGCCCAGCAAGCCACTATCGATGAACTGCATCGGCAACTGGGGCAAGTCATCAGCGAGAGAGACTGGCTTAAAAAAAAGTCCTCACAGCTCACTTAGAGGCTCGTAAAGCACTGCTAGAACCTAACAACAAAGATTTCAGTACCCGTAAACAATGCGAACTACTGGGTATTAACCGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2029625-2034877 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024180.2 Moraxella osloensis strain KSH chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2029625 28 100.0 32 ............................ ACCAATCGAAGGCGGTGATACTTACACAGTTC 2029685 28 100.0 32 ............................ TGAGGTTACATGGGAGGACCGATGCGCAGCTG 2029745 28 100.0 32 ............................ ATCGTGGATGAATACCACGAGCACCCAGACAG 2029805 28 100.0 32 ............................ ACCCACCGATGCCAACCTTGCCGCCGCCAAAG 2029865 28 100.0 32 ............................ AATCTGAGATGGTTTTTTACATGGAAGGCATC 2029925 28 100.0 32 ............................ ATCTTATCGTCGTGCGTAACTCGCTTGAGCAA 2029985 28 100.0 32 ............................ TGAAGGATTTGTCATCAGTTTGACGACCATGC 2030045 28 100.0 32 ............................ TGAGTGAGCGGGCAATATTGACACCCTTCTCG 2030105 28 100.0 32 ............................ ATCGCCCAGTACTGCCACGCCGCCTTGATTGA 2030165 28 100.0 32 ............................ GTCAGCGACATACTGGCAAAAAAGCTCTTGTC 2030225 28 100.0 32 ............................ AAAGATAAATACGCGTGTGAGACCATTAAATT 2030285 28 100.0 32 ............................ GGCATGGGTTTTGCCATCATCACGGTGCATCA 2030345 28 100.0 32 ............................ TTTGCTTTCTCGCTATCGTTTTTTGACTTACC 2030405 28 100.0 32 ............................ ACCATAATAGCCAGCATCATCACTACGCAAAA 2030465 28 100.0 32 ............................ CACTTGTTTTATCTCGATATCTTTACCGATAC 2030525 28 100.0 32 ............................ GCATAGAGTACAGGCTAGGCTTGAATATGCCC 2030585 28 100.0 32 ............................ AGTAGCGTTTACTATGCGTAAACCCTTGTAAG 2030645 28 100.0 32 ............................ TAGAGCAGTACCAACAGGCGCAGAATGTGAAC 2030705 28 100.0 32 ............................ AATAAAAAAGCTAAAAAACTCTTTATAATTTC 2030765 28 100.0 32 ............................ AAGCAAAAGCCATGACAAGCCATGAAGCCATA 2030825 28 100.0 32 ............................ TTGATGTCGGTTAAGATATCAAGGGTTGCTTT 2030885 28 100.0 32 ............................ ACCTAGCCCTTTAAACAAATCTGATATTGCTT 2030945 28 100.0 32 ............................ GACAACAGCACTAGAGTAACCAACCGCCCAAT 2031005 28 100.0 32 ............................ TCAAGCCTTTAGTTATTGCTTTGGCTAGTTAT 2031065 28 100.0 32 ............................ TCAAGCCTTTAGTTATTGCTTTGGCTAGTTAT 2031125 28 100.0 32 ............................ GATGAAAGAATTTTAGAAATAGCTCGTAAATC 2031185 28 100.0 32 ............................ TATTTGCGACAGATTGACGGAGGAAAACCAGC 2031245 28 100.0 32 ............................ TCTTGTTCACTAGCACCGACAACAGCACTAGA 2031305 28 100.0 32 ............................ GAGCGGTACAGGCGGCGATACCAATCGTTCAG 2031365 28 100.0 32 ............................ TGCTTGAAAACGTGCCAGTTCTGTATCGGTTA 2031425 28 100.0 32 ............................ ACAGCAAGTTTACCTTTTCCTGAAAACTTACC 2031485 28 100.0 32 ............................ ACTTACAGCAAGTTTAATAGCGTTTTTAAACT 2031545 28 100.0 33 ............................ ACATACCCACTTTCGAGTGGTTTTTTTATGGGT 2031606 28 100.0 33 ............................ ATTGCTCAGTTTGTGCGACATAGCGTTTTACTG 2031667 28 100.0 32 ............................ ATAACTATCCCCTTATTTGCAATCCATTGGTT 2031727 28 100.0 32 ............................ TGTTCGCACCATTTACACCAACATCAATAATT 2031787 28 100.0 32 ............................ AACAACACCATTCGAGTAACCAACAGCCCAAT 2031847 28 100.0 32 ............................ CACTTTTCGCGGTCAATCGTTATCATACCGAC 2031907 28 100.0 32 ............................ AGTTAAAAGGTACTCGTCCACCACCTTTGCCA 2031967 28 100.0 32 ............................ GCAAGGCATTGGCAGATTCAATGTCGCTGATT 2032027 28 100.0 32 ............................ GCATGGGGGTTTTGCACTGGCATAAATTTTGG 2032087 28 100.0 32 ............................ TATATGTGGCAATTAAGCCACATTCCAAAATT 2032147 28 100.0 32 ............................ ATCGCTTAGATGGATAAGCCCCAGCCAATGAG 2032207 28 100.0 32 ............................ CGATGACCCTGCTAATGAAGTAATTTTTGCAG 2032267 28 100.0 32 ............................ TTGCTCGCAGCATTGCGAATATATAGCGTATT 2032327 28 100.0 32 ............................ ATAGCCAGTAAAGTGAGTTTTGGTCTAGCGTC 2032387 28 100.0 33 ............................ AGCAGCTCATCGATGTAGTTCTGCATTTTTTTG 2032448 28 100.0 32 ............................ GAAAAAGTCTATGAAGTAGCAGAACTTTTTAA 2032508 28 100.0 32 ............................ GCTTTTTATTTCATGTTCTAGCATCAAGTTAA 2032568 28 100.0 32 ............................ TTGATTCAAACCTGCGTAATTAGCGTTCCAGT 2032628 28 100.0 32 ............................ AAAACAAAGGCAATCCGATTGATAGTACGATT 2032688 28 100.0 32 ............................ TAAACAAACTGCCCCACTCAACGACACCCAAG 2032748 28 100.0 32 ............................ TTGTTTGATAAATTGCTCAGAAATACTGGTTA 2032808 28 100.0 32 ............................ AATTTGAGACACAAGGGAAACTTAGCACTTCT 2032868 28 100.0 32 ............................ GCAGCAGCAATATAACGCAGGACTTACCCCAC 2032928 28 100.0 32 ............................ TTCATCAAAGTAAATAGCACCTTCAACCGCAG 2032988 28 100.0 32 ............................ TTCAACCGCAGGCAAACACCTACCTTCCCAAA 2033048 28 96.4 32 ...........T................ GACTCTATCATGAGTCGGTGAAGTGTGAGATA 2033108 28 100.0 32 ............................ TTGCAAATCTGAAACCGCAAAACGGCTTCGTA 2033168 28 100.0 32 ............................ CCAATTAAAGCGTAATGGCTGGATATCATCAC 2033228 28 100.0 32 ............................ CGTAAAAGCGCCGCCGACCCATACAACAGCAT 2033288 28 100.0 32 ............................ ATCGCGTTTAACCTTGGATATTGTTTCAGGTC 2033348 28 100.0 32 ............................ TTGACGGTCAGACCGAACTAGAGGGCGAGCGC 2033408 28 100.0 32 ............................ TAGCCGCCTTGTAAGACTTAGTTACTTAAAGT 2033468 28 100.0 32 ............................ AATATACAACCCTGCACCACCTAACGCTCGGC 2033528 28 100.0 32 ............................ GTCAGCCGTGAGCCGTGTATTGGCTAAGGTTG 2033588 28 100.0 32 ............................ TCCAGTTTTAGCGTTACCATCTCAATAAATTC 2033648 28 100.0 32 ............................ ATCGGTTGAAAACGAAACTAACATCAATGTCG 2033708 28 100.0 33 ............................ CACAATGCGCGGTACGATATGGATAATATCGGT 2033769 28 100.0 32 ............................ TTGATATCATCATAGTAGTTTGTTAGTAGGTC 2033829 28 100.0 32 ............................ GACCTGACAAGCGACCTATTAACAGCGATTTG 2033889 28 100.0 32 ............................ TGTGCGCTCGCATAGGCTTAATACGTCACCCT 2033949 28 100.0 32 ............................ CGAAATCCTTTACCCTAGCTTAATTCCTGTCG 2034009 28 100.0 32 ............................ GTTAGAATTGCTGTCATGCGCTCACCGCCTTT 2034069 28 100.0 32 ............................ ACATCGCCCACGTTTCTTTTTCAGACTTGGTG 2034129 28 100.0 32 ............................ TTTTCGAGAAACTAGGCGACCCCGAACAAGAA 2034189 28 100.0 32 ............................ TTCAGGCGGTGCGATATAAAACTTATCTGCAC 2034249 28 100.0 32 ............................ TGTATTTAATTTAAACCCAGTCAGACCAAAAA 2034309 28 96.4 32 ...............A............ ACACTAACAACGCTAATCGCATCAGATAAAAA 2034369 28 100.0 32 ............................ ATAAAAAAACCGCTTACAAGTTAATGCAAGCG 2034429 28 100.0 32 ............................ AGTATTTAACTTAAACCCAGTCAGACCAAAAA 2034489 28 100.0 32 ............................ ATGACGCGGACTATAGCGGCAAATCTGATGCC 2034549 28 100.0 33 ............................ ATCACCCCAATGCGTCTATTCATGCGCTTGATT 2034610 28 100.0 32 ............................ TTATTATTAAAATCATTATTATTAGTGTCCGA 2034670 28 100.0 32 ............................ CCTTCAATGCTCCAATATGCTGATAAAGCCTT 2034730 28 100.0 32 ............................ TATACATTCATAAATTAAATTAATTGTGACAA 2034790 28 89.3 32 A............C............G. TGTTGTTATTCACGAAATGGGTGGTCACGCAG 2034850 28 75.0 0 A............C.....A..G..TCT | ========== ====== ====== ====== ============================ ================================= ================== 88 28 99.5 32 CTTCACCGCCACATAGGCGGCTTAGAAA # Left flank : TTGATCGATTATGTGCATTTGACCAGTATCAAAGAAGTGGGCGATAAAGCAACAGGTCATGTCATTGTCAGACGCTATCGATATAAAGACTTTGACAAAAAGGTGTCGGAATTTGCCAAGTTTAAAGGCATTAGTGAAAAAGACGCATTGGCTCATTGTCTTGAGCATAAACGCCCTATCAAACGCTATCCTTTTATCAGCTTAAAAAGTGAAACCAACCAGTCTGATTACAGATTATCGATTTGGCAAGAAACCGCCAATGAAGCTAAAACAGGCAGTTTTAATACTTATGGCATCAATAATATGTCAAATGACGTGACCGTGCCTAATTGGTAAGTTATAGTTGAATTATAAAGTAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATCAGTTATATCTAGGCAAAAAATGTAGGGTAAGAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCT # Right flank : TTAATTAGTAAAACAGTGAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTGAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCATTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATTACAAAAGTGGTCAAAATTTCAATCCTCGAAAAACCACGTAAACCCTTGATATCACTGCAATAAAAAAACCCCAATCAATCGACTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATATGCCTAAAAGGGTCTAACAATCTACTTGCGTAAGTAGGAGTGCCATTTTACCAAAAAATTTTGCTTTTGCAAGTGGTTTTAATTTTTCGCTTCAATTTTTATTGCACCATCTTCAGCTAAGTTTTCGTTAAGGTTAGCTTGTTTTAATACACTCAGCCACTCGGATATACCTCAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //