Array 1 40383-41385 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKN01000001.1 Actinomyces oris strain M48-1B-1 M48-1B-1_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 40383 27 100.0 34 ........................... CCGCCCCGATCACGATGTCCTCGTCATCCTGACG 40444 27 100.0 34 ........................... CCGCCGTGCGCGCCGTCGAGGCGGGGGAGAACCG 40505 27 100.0 34 ........................... CCATGCGCCAGGGCATGGAAGCCAGGGGCTTCGA 40566 27 100.0 33 ........................... CCATCGGCGCGATCTGGGCCGACTTCGTGATCG 40626 27 100.0 34 ........................... CCTTTATCAACGGGGGCGGGGCCCTTCCAGGACG 40687 27 100.0 34 ........................... CGACGTGCTTGCGGGCCTGCCTCACGCCCGCCTC 40748 27 100.0 34 ........................... CGCCAAGTACGTTGTCGGCATTCACTGCCATTGG 40809 27 100.0 34 ........................... GGCGGGTCGGCACTGGTGCGGTGGTTGGTAGTGC 40870 27 100.0 34 ........................... GCGCATTCAGGGACGTCACCGCCCCCATGATGCC 40931 27 100.0 34 ........................... GGTACCCGTCACTGTTCGTCACTCGTCAGATGGC 40992 27 100.0 34 ........................... GGACGATCCGCATACGGGTGCGGGCATCCCCGGT 41053 27 92.6 34 ........A.....C............ GGGTGAAGGTGGAGAAGGCGCTGCGCCTGTACCG 41114 27 96.3 34 ..............C............ GGATGGTGGCCGCTCCGAGTGGGATGATCGACCT 41175 27 96.3 35 .......................G... GCGGCACCAACATGCTGGACTGGTGGCCGAGGAGC 41237 27 88.9 34 ..T..........TC............ GGGCGGCCTCATGCAACCGGGCTTCTGACTCAAC 41298 27 92.6 34 ..T.............T.......... GCATCGTCTCGTCCGCGCCCAGCAGTAGCAGCGC 41359 27 77.8 0 .C........T...C........CT.C | ========== ====== ====== ====== =========================== =================================== ================== 17 27 96.7 34 GTCAGCCCCGCGCATGCGGGGGTAGAG # Left flank : CGGGCTGGATGCTGCCACTCATCGGTGGGTTGGGCCGCCGTCACCTGCCCGTCCTGCGGGGGGTGCTCGTGGCTGGGGGGCTTCGGCTTCCGTCCGTGGGACTCGCGGTAAGGACGGGGGTGGTTGAGGCCAGACTCGCCGAGACAAGGACATTGGCTTCCCTGCCTCGAGTTCTGCGGGCCGCTACCGTTCCTTCATTGCAATGGACCACTGTTGTGCCGACGGCGGAGGAGCCTGAAGGCATCATGGACATACTCGAGGAATGCGCCTCGGGGCTCGGCTGCAGACTCGTTGCGGCTGAGCGTCACTCCGACTCACGAAGCGACGGAGGTGTCGATGTGCAGCAAGACAACGAGCGCTGGCACGTCTCGGTCGCCTTCGACGCGAAGGTACCCGGGCCGGTGGTCTTCGACGGCACCCTCATGGTTCCCCTGGGGGCCACCACCTTGGCAGTGAACCCACGGCGACCCCGAGCCGACTAGCATCGCAGGTCAGCAAGT # Right flank : CATCGACATGCGGTTGACGCTGCCTGGGCCCGGTCAGCTGCCCAGGGCGCCTACTGCACGAGGGTCGGGTGCTACTGGAAGAGGGTTGGGGCTACTTCGCGGGGGTCGGGGGTTCGTGCAGTACGCACAACCTTCGGCCAGTAGATCCCCACCCTCGTGGAGTGGGCCGGCTCGAGGACGGCGCCAGGGCTGAGCCGACGTCGAGCCGCCGCCGGGAAGCTGCGCGGGAACCAGGCGGCAACCACAAAGGGCCCGGTCAGAGGTCAGGCCGGCGGAAGGCGGGGCCGGCCCCTGGGGTGAGGGCGCCCGGCGCCACCGCTAAGACCTCGCCAGACCTCGCGGAGTCGAGCACGTCAGCAGCTCAGTGTCCACGGTGCTGACATCAACGGTGCCGCCGTCGGAACGCCCAGCGGAATCGTTGTAATTCCAAGGCTCCGTCTCGGCTCGCGACGCCGGTGCCGGGTTGATGTCAGCGTCATGGACACAGGCGTCCCACCAGG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCATGCGGGGGTAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 50-1116 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKN01000033.1 Actinomyces oris strain M48-1B-1 M48-1B-1_contig033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. TGAGTGTCCTGCTCATGAGCACCAGCACGCAG 111 29 96.6 32 ............................T GTTGTGTTCGCGAGTACCACTCCACCGGGTAC 172 29 100.0 32 ............................. CACAACTCAAGGTCTACTGACGTAATCGTCAC 233 29 100.0 32 ............................. GATGACGCCCGCTTCTGCGAGGGCGACAGGTT 294 29 100.0 32 ............................. CATCATCACCGACCAGGGCGACCAGTACGTGC 355 29 100.0 32 ............................. TAATGCGGTTCTTGATAGTCTTACTAAAAGGG 416 29 96.6 32 ............................T CGCCCGTACGTTCAAGAATTGTCTGTGTCATC 477 29 96.6 32 ............................G CAAGTTCGCGAGGCTTCATAAAGGACTCGCGC 538 29 96.6 32 ............................T ACCCGTTTACTAAGCCGTTTTCCGTCTTAGGG 599 29 100.0 32 ............................. CCGGCAGCAAGTACGGGCGCTGGTACGCACAA 660 29 96.6 32 ............................G GTCCTTCGCGCCCGAGATGCTCACATTAGAGA 721 29 96.6 32 ............................G CCATTGACGTCGATCTGCTCCCCATCAACGCC 782 29 96.6 32 ............................G GCAGCCTGCACCAGGGGCCACAGGATGCCCAG 843 29 100.0 32 ............................. TCGCGCTTCACGTTGTCGTTGCCGGTGAAGGA 904 29 96.6 32 ............................G AACTACGGATGGCCCAGCCCTGATGGCCTCGT 965 29 96.6 32 ........T.................... TCGCGCCCGGGGGCCGTGTCGGCCTCGCGTGA 1026 29 100.0 32 ............................. TGCGCAGCAATGGTGGTGGGAGACCATGGCGC 1087 28 79.3 0 ..G.......T.....T.....C.-G... | A,A [1107,1109] ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CGAGCGGGGATGATCCCACCATCACCTCACCCACCACGCGAATGTGGTGG # Right flank : CGTGTGCTTGAGGTGGAGTGACCGGCTCATGAGTCCGGGCGGGGTGCCTGGACTGGTGCCCACCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGATGCCTCCGTTGTGGCGGACCCGGCTGCGAAGGAGCCCACCGCCACCGTCGAGAAGGTCACCGAGACGGCCACGAGGGGGGCGGCCGAGGCCTGACTCAACACGCTCAGTCGGTTAACTTTACAAATACATCTGGTGTGATGCAGGATAAAGCCGTTGCTCGGCCACCAGGGTCTGGTCGGGCAACGGCGTGCTCCTGTTCCCCCAGGACCGCCTCTGTCATCTCCCTAGCCGGTACTCATCAGGCCGCCGACACGGCGGTCTGAGGGGCGTGCGCGTGTCCCCTCCCTGGGCCGGGCTGCCGGCACTCTCATTAAGAGGTATTGACAATGAGTGTCAAAGGTGCCGCAGAGGTCATTTTCTCCCCTCCGGTTCAGAACTGGTTGAAGCGGGCGATCTACCGT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 131936-132757 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKN01000037.1 Actinomyces oris strain M48-1B-1 M48-1B-1_contig037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131936 29 96.6 32 ............................G GCCGGCAGTCTTCGCCACGACGCCGAGGAGGT 131997 29 100.0 32 ............................. GTGATCCACGCCACCTACAACGTAGGCTTTGT 132058 29 96.6 32 ............................G ACGGCGTAACTACCGCCGCGACGTCGAAGTGG 132119 29 100.0 32 ............................. AGCCTGAGCCTCCGCCAAAGTGAGAGAAACGT 132180 29 96.6 32 ............................G CAGAGTCTCGATCGCCTTCCACGAGTCGAGGT 132241 29 100.0 32 ............................. CGCCGCCAGCCTACTGATCCACCTCGATGTCG 132302 29 100.0 32 ............................. GCCGACGGCGAAGAGATCCCGGAGTGGGAGGC 132363 29 100.0 32 ............................. CCGATGGTCGCCCTGAACGATGGAGCGATCGC 132424 29 96.6 32 ............................G TCGGACCACGGGTACCCGCGGTTCACGTGCAC 132485 29 96.6 32 ............................G GCCGACCGGGCCATCTACAGCAAGGCTGACGT 132546 29 96.6 32 ............................G GCGCAGGGTCCGGTAGTCCCCGTGCCCTCGGC 132607 29 100.0 32 ............................. ACCCGGTACGCAGGCGGCTCCTACGAGGTCAC 132668 29 100.0 32 ............................. CAGGAGCCCACTGTGACCCGGACCACTGACCC 132729 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCTGGTGGGGCGAACTACGCCGGAGAGGACGCAGGGGGATGGTAGTCCTGGTTCTCTCCGCTGCCCCTGCCTCGTTGCGGGGCTCTATGACCCGCTGGCTGTTAGAGGTCTCTCCTGGGGTCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGTTGTGGGAGCTGGTGCGCGCATACATCGGGGAGGGACGGGCTCTACTGATCTGGTCGGTGCGATCCGAGCAACGGTTCGAGATCGCCTCCCTGGCGCACGAACGTGAACCGGTCGATATCGAAGGGTGCCTTGTCATGCGCACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGACGCTATCGGAACTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGAGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAAGGATCCGCAAGC # Right flank : CCTCGCGGGCGGCCTCCCCGAGACGGTCCCAGGTAAACCCCGCGCGAGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-2031 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKN01000052.1 Actinomyces oris strain M48-1B-1 M48-1B-1_contig054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 96.6 32 ............................G GTGGCCGTCAGCGTAGCGATCTCGGCCTCGGG 112 29 96.6 32 ............................G GACGGGTACCAGGTCACCACGAGCCAGATGAG 173 29 96.6 32 ............................G GCCTGCCGGACGGCGGCCTCGCCCTCGCCGAG 234 29 96.6 32 ............................G GCCCTCGCCCGTGCCTACCGGGAGTACAGCCT 295 29 96.6 32 ............................G GACTGCGTGCCCTTCTCTCCGGGCAAATCGAT 356 29 96.6 32 ............................G GTCCCCCGGCGCTGGCGACGGGCGGAGCCCGG 417 29 100.0 32 ............................. ACGTCCGGAATCTTGAGGCGGCGGGTCGGCGG 478 29 96.6 32 ............................G GGCGGTGAGGCTGTCCAGAACGACGGCCTTGT 539 29 100.0 32 ............................. GATAGGTAAGCCCAATGAGTCCCACCCAGCGT 600 29 100.0 32 ............................. TCGACCTGGAGCTTGATGCGCATGTCCTCGTA 661 29 100.0 32 ............................. GCCGGCCTCGTCATCCGTACCCTCGCCCAGGC 722 29 96.6 32 ............................G CGGGAGAGCTTCTCCAGAGTCACGGGGTGATC 783 29 100.0 32 ............................. CCAGGATCGTCCTAGCGCGCCTCATGGAGGCG 844 29 96.6 32 ............................G ACCCGCACCGACATCGCCCGCGAGCTGGGCCG 905 29 100.0 32 ............................. GACATCTACATCATGGCGCAAGCGATGCGCGT 966 29 100.0 32 ............................. GGCTTAATGTACACATCCTGGTACTTGCTCTG 1027 29 96.6 32 ............................G CGCTGACATGAGCAGGTACTCGTCCCAGTTGT 1088 29 100.0 32 ............................. TCCTTCCCCTTCGGCGTCCAGTACGTGCAGGG 1149 29 96.6 32 ............................G ATCGCGTCGAGCTCGTCGTCGCTGACGCGACT 1210 29 100.0 32 ............................. GGCCAGGAGACCTGCCCGGTCGGCTTGCGTGT 1271 29 96.6 32 ............................G GCGGCTCAGGGCCAGCATCTCCCGATTCAGGG 1332 29 100.0 32 ............................. GACTTCCAGGATTGGGCGTATGAGGCCATGGG 1393 29 96.6 32 ............................T GACGTCCACGACGTTCACCACCCTTCCTGGGC 1454 29 100.0 32 ............................. TGCTCCGTGAACTCCTCTGGTGAGATAAACTG 1515 29 100.0 32 ............................. CTCACCCAGACCACTGTGGTGGCCGGGACCGG 1576 29 100.0 32 ............................. GGCTCGACGCCTCAGACTATGACTTTGAGGCA 1637 29 96.6 32 ............................G GCCGGCTCTACCGTGTTCGCGCGCGTCGAGGT 1698 29 96.6 32 ............................G GTCGGCAACCTTCAGGACGTGCTAGTCTCTCT 1759 29 100.0 32 ............................. GAGAGGGACAAGAAGGGTGACGGCAGCCGCGA 1820 29 100.0 32 ............................. CGCGGCGCTGTTCTCTGACGGCAGCAGGAAGA 1881 29 96.6 32 ............................T GTCCCACCAACCCATAGTCCTGAAATCGTCGG 1942 29 100.0 32 ............................. AATGACCACCAACGACCTCCTCGCCGAAGAGA 2003 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 33 29 98.2 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCGAGCGGGGATGATCCGCACATCGTCCGCTTCGGCACCGACCCGGAGTAG # Right flank : TCAATAACCACCAACCCACCACACCACAACAGGTAAACCCCGCGCGAGC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24887-24413 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKN01000060.1 Actinomyces oris strain M48-1B-1 M48-1B-1_contig063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 24886 35 100.0 40 ................................... TCTCCTCAGTGAAGACTTGGGTACTGAAGTCTGGGAAGGT 24811 35 100.0 40 ................................... AGCATCGCTGAAAAGTCGCATTATGGATCCTCTTTCTGGT 24736 35 100.0 38 ................................... TTGATGTCCCAGCCAGGTGCCGTGTTGTACACCTCGGC 24663 35 100.0 37 ................................... ATACTGGCAAAAGCCTTGGCGTAAGCAATCTCCTTGT 24591 35 100.0 34 ................................... TTGCGTTCATGGTGGTTGCTCCATGGTCGGCGGC 24522 35 94.3 39 ...........TC...................... ACCACTCGCGCCTCTCCCAGCACGGCGGAATCACTCCGT 24448 35 80.0 0 .......................CGC....C.CGG | T [24418] ========== ====== ====== ====== =================================== ======================================== ================== 7 35 96.3 38 CAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : AGAAGGTGCATTAAGACTCTTGTAGAGAAACCACAGCCTGAGCGTGGCTTCTAG # Right flank : GGCTTGTCGTGCGGTGGTTGCCAACAGCGTTGGATAACGGCCGTCCGACCGCCAGTCCCTTGAACAGGCCCTCCGAGTCGCCCCGAACCACCCCGCCACCACGGGCGCCGTCCTCCTCGACGGCAATCAAGGCCTCCACCCCAGGCGGATTCGTGCCAGGTGAGCTCGCGCGATTCCAGGAAACGTCACGCAGCCGAAACGCCTCTACCGCGGGAGCCGGCCAAGCGGACGCACACAAAAGCGGGCGGCCCCGAGAAACTCGATAACCGCCCACTCGCTGCTGATTTCTCACCTGCCCACGAACAGCAGGACATCAGTCGCCCAGGCGGCCGGGCCGACAACAGCCCAGCCAAGCCGCCTCGCGCGCCGCCCCCGCTTCAGACGCGGCGCAGACGCAGGATGACGAGGCCGCCGGACAGCAGGATCGCCGCCACGGACAGCACACCGATCGCCACACCCGTCACCGGCAGCCACCGCTCCCGGACACTCTGGGCGGAAGG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 9473-9222 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKN01000061.1 Actinomyces oris strain M48-1B-1 M48-1B-1_contig064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 9472 28 100.0 47 ............................ CTGAAGTTGGTAGCCATCAAGAACCAGGAGACCGACGAGTCTTAATG 9397 28 100.0 46 ............................ TGTGAAGCGTCACAGTCAGGGCGAATAGCCCACCGAAGTCTTAATG 9323 28 100.0 46 ............................ TCCAGCGCAACATCTGGGGAAACCTGGCTCCCGAGGGGTCTTAATG 9249 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =============================================== ================== 4 28 100.0 47 CACCTTCTGGTGCTGGGTGCTTTCTGAC # Left flank : CCCTTGGGGATGCCGAAGCTCAGGAGCGGGTCGGGTTCGTAGGTTCCTGAGCGCAGGGACCCGGAGAGCTCGGTGAGGAAGTCATCGAGATGCTCGGCGAACTCCTTGGTCTTGCGCTGCAGGACGCCGTCGGAGGCGTCCTTGGCGAGGACCATGCGCCAGCCTCCCTCCAGGCCCTCGCGGGAGCTGATGCGCTCGAACAGGGTGCCGGTGGCCGCCTCGGACGACGTAAAGCCCGCGGCGTGCTGGAGCGGGTGAATGTCCTCCCCGAGGTACTGGCCCGGTTTCGCGCGATCGGAACGACGGCGACGACGGTGCGGGCGAGGTGGGGATGGCGGTGTCGTTGATAGTGGTGGTGATGGCTGGGCTGGACGCATCATTGCGGCCTTTCAAAGGCGGGAACGTGAAGAGGCTCTGGAGGACAGGATATCGAGATGCTGGCGGACAAGGGAGAAGATCGGCATGCGATCTCCCGGCACGTGCCGATATATGCCTTCATA # Right flank : CCCTGCCTCTGAGAACGGCGTCGTTGCGCCACTTCCAGGGGCTGGAGCGCCACCGGCTCTGCAAGCACCCCGCGGGACCGGCCAGCACCACCCCTATTTAACCACCTTTCGGCGTCCTGACGCCAAGCGCCACCGACGGCACCTGGAGCATCTTCAGCCCCCAGCTTCCAACGACGTCAAGCCAAAAGGTCGACGTTCCCGCCTGTGACTGCGGGCACATCCTGGTGTGGTGGAGGTGGAACCGGTCCCTGGACTCGGCGTCAGGAACGTTTCCTACGCCGAGTCACCCGGCCGCCCAGCTCGTTAAGGAGATGAAGATGGACTGTAAGTTCCGTCAATAGGCCTCCTGATGCTGGGTGCTTTCTGGCACGCGGTTCTTGCTCACGCCGACAACTACGGTATCAAGTCTTAATGCGCCTTCTGGTGCTGGGTGCTTTCTGGCACCGCCTCTCCATGTACGTCAGTGCTGGGGTCAAGGTGTCTTAATGCACCTTCTGGTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACCTTCTGGTGCTGGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 22342-22521 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKN01000061.1 Actinomyces oris strain M48-1B-1 M48-1B-1_contig064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 22342 37 100.0 33 ..................................... CTCATGGTACCATTCACCGAACCTGTCAGTGAC 22412 37 100.0 36 ..................................... TCGATGTCGGACTCCATGAGGATGACCCGTGTCTTG 22485 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 40 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CATGGAGATCGCCTTGGCGGTCCTGACCTTCATAGGGCTGCCGCTGAGCGTGTTCCTGGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGGCACCAGCGCATCGGCGGCTGGGACGCGGGATGGGGGTGGATTCTTGGCTTCGGTCTTATCGGGTCGATCCTCATCGGCGGTGGGATCTGGCTGCTCGTCGACAAGGTGGGCGGCCGGGTGGCTCGGCGTAGGAAACGCTCCTGACGCCGAGTCCAGGACCCGGTTCCACCTCCACCACAGCAGGATGTGCCCGCAGTCACGGGCGGGAACGTCGACCTTTTGTCGTCGGAAACTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAAGGGTACTGCTGGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGGG # Right flank : | # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //