Array 1 3598-3042 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTNR01000027.1 Natronorubrum thiooxidans strain HArc-T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3597 30 100.0 38 .............................. CGCGTTAGAGACTCTGACGGCTTCGTTTCGGCATACCC 3529 30 100.0 35 .............................. CCGTTTCGACGCCACCTCGAGGCCGTCAAAGAGGC 3464 30 100.0 35 .............................. ATGAATAACGGGATTTATGACTCGCGGAAAACCGA 3399 30 100.0 36 .............................. CTCTCGACTGTTCCGGCCTCCCGACCTATGCTCGCG 3333 30 100.0 36 .............................. GACTGGGACGAACGCTTCAGCTTCACCATCGACGTC 3267 30 100.0 35 .............................. CCGTTTAACGGGTACCCTATCGGGGACTATCCTGC 3202 30 100.0 35 .............................. TCCTCGATCGCCTCGAGCGTCACTGTCGTTGACTC 3137 30 96.7 36 ...............G.............. GTCCTCTTCGCCCGTACCTGGATCGGCCATCTCGAG 3071 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 99.6 36 GTTACAGACGAACCCTTGTGGGGTTGAAGC # Left flank : ACTCTCGAAGGGCCGGCTTGCTGTGAAAAAAGGAGACAGCGAAAGAACGGCCTTGAGTACACCGAGCGACGTGTTCTGTTGATGGACAATGCCGATATTCCGGGTGAGACCTTCGAGGCTGGAGACACCTGACGTCCACACTCGAGGGTGTCCCCAGGCAACTCACAACCCCTGAGAAGGGTTGCACTCTCCACGCCACACTGAAACCCTGCACGAAAGCGGCTGTTTGCTCGGTACGGCTACTGGGCAGTACGTCACTCGATCGGTCATAGTCGGTCTTCCTCGAGTGGCCCGCCTACGGATGTGTCTGAAGACATCAGCTGTCTCAGGAAACAATGTGACGAGGTTAGCAAATCCAGAGGATGTACCGAGAAGCAAGTGGTCGGGTGTCGCAGTCATTGTTTCCGTCGACCCCCAGAGGTTTGTCGGCTATTGCAGGTCGACGGAAACAGATTTGTGAGAGTGACAAGTACGGTTCCTATGGCCGGGTTTCCGGCATG # Right flank : GACGCTCGACACGGCTACCGCAGTCTCGTCGTGTTCGTTCGGTGGGGTCGAAGTACGCTGAGATCAAGCAGTGAGAGCCGACGGGACAGTTTTAGACGAGCGCGTATTGAACCAAGTACTCGTTTAAGATCTCAGCGAGTAATGCCGGACCGCATGGCCTATCAGAATTGTACAGAATCTACGTTAGGTTTTCCTACAGGTAAGCCTATAGGAAAAGCCATAGCTGATTTATTAGCTTTCCCTGTAGCTAAAGCGATAATATGGACGATAGCGAGGAGTGTGAAGTACCTCGGGGGCAAGCCCCGAGTTACTCACCCTTTTCAACCTGTAGAGGTATCTAAAGCTGTTCGACCGATTCTTTCTTGACCGCAACAAGATCGTCGATGACTCCAGGAGCGCCATCCTGCATCCCAAGCCGGAATGCCATTCGGAGAAGTTCGCTCCGATCGAGATCGTCAATATTGGGCTCACGACCGAGCGACTTCTGAAGCTCTGCACCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 5658-4906 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTNR01000027.1 Natronorubrum thiooxidans strain HArc-T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5657 30 100.0 32 .............................. CGAGGACCAGCCGACGATCTCGACGAGCCCGG 5595 30 100.0 37 .............................. GGCTTCTCGACCGACGATGATGGCTATCTCCAGCCGA 5528 30 100.0 37 .............................. CATTTCCGAGGTCGTCTTTGGGTCGGCATGGCGCAAC 5461 30 100.0 36 .............................. CGGTCGTTGTACCGTGAGCGGTGGCGCTTTTGGCCG 5395 30 100.0 37 .............................. GATGGTTTGCTCTCGAGCCTGCTCCTCGCTCTCGCGG 5328 30 100.0 36 .............................. CTCGTCCTCTTTAGTTTGACCGCGCTCCGATCGGGA 5262 30 100.0 36 .............................. GAGAAACGGTCGACCGGTCCCGGTCAGTCATCTCGG 5196 30 100.0 35 .............................. GGCGTCGGCACCGCTCGCGCCAAAGACCTCGGCTG 5131 30 100.0 36 .............................. GAGGACGAGGACGACGAGGACAAAGCCCAGCTCGCC 5065 30 100.0 35 .............................. CGTGATAATCTCGAAGGGGCTGCTCAAGAGTGGCT 5000 30 100.0 35 .............................. TCTCTCGAGTTCGAGGATTCGAGAGATTGGTGCGA 4935 30 96.7 0 ..............G............... | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 99.7 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : AACCCTCGAGCGAACTGTCGATCACCCCGATCTCAACCGGAAAGTGAGCTACCAGTACCTGCTTCGACTCGAGGCGTACAAACTCAAAAAGCATCTCCTGACGGGCGAGCCGTACGAGTCGTTTGAACGGTGGTGGTGAAATGTACGTCATCATGGTCTACGATCTCCAGGCTGACCGCACCCACAAGGCCCTGAAGATCGGCCGCCGATACCTCACCCACGTCCAGAACTCCGTCCTCGAGGGTGAAATCTCTGAAGGAGACCTTAAGAAACTCCGAAACGAGATCGATGATTTGCTCGAGCCCGGGGAATCGACGATTATCTACGAGCTCTCGTCAGATTCGATCCTCGATCGGGCTGTCTACGGCGAAGATCCAACAGAAGACCAGCGGTTTCTGTAGAATCGTCGACCCCCTAGGGTTGAGCGGTTATTGGAGGTCGACGGAAGTTCTTTGTTGGAGACGTCCCACAGAGTAACTGTCGCCTGGATATCGGGCATG # Right flank : TACGCTGAGATCAAGCAGCGAGAGCCGAAGAGAAAATTTCAGACGAGGGCGTGTTGATCGAGATAGGTAGTCGTTCGAGACCTCAACGAGTAATGACGGACACGTATAGCCTATTGGAACTGTACCAGAAGCTGTATTAGGATATTCTACAGAAAATCCTATAGGGGGAGCTATAACCAAGATATTAGAGTTTGCTGTAGCTGGGCCAATAGTATAGACTATAGTAGAAATTATAGGGAATTCTACAGCTGTTCGACCGGTTCTTTCTTGACCGCAACGAGATCGTCGATGACGCCGGGAGCCCCATTCTGCATCCCAAGCCGAAATGCCATTCGGAGAAGTTCGCTCTGATCGAGATCATCAATATTGGGCTCACAACCGAGTGATTTCTGAAGCTCTGCACCGACTTTCTCGCCGAGGTCAGACAGTCCGCCGTCGCCCTCGAGCGCATCCGCAAAGACGACTGGCAACGCTACTTCCGCCTCCCCGAGAGTGACGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 22319-20977 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTNR01000027.1 Natronorubrum thiooxidans strain HArc-T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 22318 30 100.0 36 .............................. TGTCCGGCCAGCAGGTAGATCGCGAGGATAGCGATA 22252 30 100.0 36 .............................. GAGATGTCGTCTTTGACCACCATATCGAGGATGGTG 22186 30 100.0 37 .............................. TTCTGGACCCAGAGTTGAGTTCCCAAGAGGAAGTCAA 22119 30 100.0 40 .............................. GAGCTACGACGTCCTCGGCAACGTTATCGAAAGCAGCTGC 22049 30 100.0 36 .............................. GGCATCGAGTCCGGCGAAGGCGAGCGCATCGAGGTG 21983 30 100.0 36 .............................. GTCGTCGAGCAGCAGTTCGCGATCGAATCCGTTGCG 21917 30 100.0 35 .............................. TCATTGCTCTGCCTCCACAATCTCCACACTCTCCA 21852 30 100.0 35 .............................. TTGAGCTCCCGCATCACCCAGTGGCGATTCTGGTG 21787 30 100.0 34 .............................. GTCGGCGCGTATCCGTACGGACAGATGCCAGCTC 21723 30 100.0 35 .............................. CTCGTGCTGGGGCTCATGTCGGCGTTCATGCTGGT 21658 30 100.0 35 .............................. GTCGTCGGAGAGTGCAATCCCATGCCCCCCCTCTA 21593 30 100.0 33 .............................. CTCGACGTCGGGACGGAGTTGGACGTCGAGCAC 21530 30 100.0 36 .............................. ATGCTACTGCTCTCCGTGTTCGCAGCAGGCAGCGCA 21464 30 96.7 35 .....................A........ CAAGCGGCCGACGAAGGAGTTACGGAGACGATCGA 21399 30 100.0 36 .............................. GTCATCGACTGGACGGCGGCCGGCGTTGGCCCGGCA 21333 30 96.7 37 ................C............. GGCGAGGCGTATCTCACGGGGTACCGCGACGACGTGG 21266 30 100.0 35 .............................. TTGGTGTCACCAAGACCCGGCACGTCATCGAGACA 21201 30 93.3 35 .....G.........G.............. GAGAACCTCAATATCGTCGACCACGGCGGCGGCTC 21136 30 96.7 35 ...................A.......... AGCGTGTGGGTTAAACCCCGGCCGTCAGAGCAGTT 21071 30 93.3 36 ....................A.......A. TCTCGGTCACAGGTTGCGGTTTTCGGGGTCATGATC 21005 29 76.7 0 .....................C-..ACTAA | ========== ====== ====== ====== ============================== ======================================== ================== 21 30 97.8 36 GTTACAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CTATTTTCAGAACGCGAAGTGAATTCTTGAGTCCACTCAATACAGAATACGTACCGTGTATTACTATTGATCGAAAGAAGCCTGATCATCTCTACGAACGGGAACTCGATGGACAAGTCAAAAAGAAAGATCATAAACGGCTGATTTTGTCCATAGACACAGTTTTGCCGCCGAATCTACCGAGTACGCGATTAAGTGCGTTCTGGAGTGATGTCCATACGAAATTTCGTTACAGCGCCTCGAGTCTATTGAGAACAACGAGGACACGCCTCCGCAGAGTCGCTCAGACGCTCGAAAAGCGAAACGGTTCATCGTGAAGGTCTGCGACGAAATGAACCTCGACGACGAGCGAATCGACCTCTCATCGCTCACCTCTCGAGTCCGAACTGGTTTTGTGTGCCGATCGTCGACCCTCCGGGGGTAGCGGACTATTGGAGGTCGACGGAAATCGCTTTGTGTGAGCAGACAGTAGTGGCGCTCAGCGCTGGGATTCCGGCATG # Right flank : AAGTCAATGTAGTAATTCACCCACAAATATATCCATCAGGGCTGTTCAGCTACGTTCATAGACAATGGTAATTCAAAATAGAGGTGACCACTGACAGTGCGGATTATGGCACACTTGTCTGCTCGAGCGGACGCCGCGTACGACAACGCGTATCATCACAAACTACGCGGACGGATTTGGGGTGCGCTCGAGGGAACCGAGTACGACCACTTGCACGACTCTGGTGACCCACCAGGGTTTGTCATGTCGAATCCATTCCCACCAGGGAACATACACGAAGGTGATGAGCGAAAACTGCTCATCGCCTCGCATGACGAACAGTTACTCGCGAACGTAGCTGCAGATCTGCTCGAAGAGCGAGAACTGAACATCGGCGAGATGCCTTTTCGTATCGAAGACGTCCACGCACTCGAGCCTGACGTCGGCGAGCCAGGGACACGGGGTACACTCGAGACTGGGACTGGACTCTTGATTAGGATCCCACCCTGGAAGTGCGAGGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //