Array 1 1543749-1544556 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008860.2 Pseudomonas aeruginosa strain H27930 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1543749 28 100.0 32 ............................ AGGCACGCATTGCCTTGAAAGGCGTTCTCTTC 1543809 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 1543869 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 1543929 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 1543989 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 1544049 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 1544109 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 1544169 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 1544229 28 100.0 32 ............................ TTGATGGGTTTGTACTCAGGCCCGGAAAACTC 1544289 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 1544349 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 1544409 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 1544469 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 1544529 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2882641-2883028 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008860.2 Pseudomonas aeruginosa strain H27930 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2882641 28 100.0 32 ............................ ACCAACCTGAACAACTGGAGACGGCGGACTAC 2882701 28 100.0 32 ............................ CCGAACCCGACCGAGAACGCCTGGGCGAGTGC 2882761 28 100.0 32 ............................ TTCAGCTGGGCGGTGGCGGCGGCGATCTGCTC 2882821 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 2882881 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 2882941 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2883001 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 95.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2893384-2891553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008860.2 Pseudomonas aeruginosa strain H27930 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2893383 28 100.0 32 ............................ TGGAATGACCGGGCCGTCGTTGAATAGCACGC 2893323 28 100.0 32 ............................ ACGTGTCCAGCCGACACGAACAACCCTGGAAT 2893263 28 100.0 32 ............................ TGCCGCCCAGGACGATCTACTACTACGGCATC 2893203 28 100.0 32 ............................ ACTCCGCCTTTGCAGCCTTCTCGACTTCTTCG 2893143 28 100.0 33 ............................ CTTGGACAACAAGGTGTTCGCGAACCGCCGCAA 2893082 28 100.0 32 ............................ TTCCGCGCTTGGCGGCCATGCTCGGCGGCCTG 2893022 28 100.0 32 ............................ ACATTCAATACAGCAACAGCAGCTGCATGCTG 2892962 28 100.0 32 ............................ AATCAATGGCAGCTCGCCGGCAATACGGGGTT 2892902 28 100.0 32 ............................ TGTTGCGCGTGAAGAGTTGTCCCAGTCGGGAC 2892842 28 100.0 32 ............................ TTAACGGTTTCCTTCTCAACCTTTCGCCATGT 2892782 28 100.0 32 ............................ ATTCACCGTCGCGGGTGTTCGCCGACCTGGGC 2892722 28 100.0 32 ............................ ATCCAGGCCGGCGCGGGCAGCGACACCGCCGA 2892662 28 100.0 32 ............................ AACGCCTCGCGCAGGTCCGCAATGGTACGGTC 2892602 28 100.0 32 ............................ TTGGCGACGTGTTCGGGTGGCCGTGATGGCTA 2892542 28 100.0 33 ............................ CGACAGAGAACGCCTGGGCGAGCGCCTGGGTGT 2892481 28 100.0 32 ............................ GGACGGGTGATGACCACCGCCTCGACCGACAC 2892421 28 100.0 32 ............................ GCCCGCGATGCCCTCGACCTCAAGCACACCCA 2892361 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 2892301 28 100.0 32 ............................ CTGGACAGTGAGCTGACCCGAAGCGCCCGCCC 2892241 28 100.0 32 ............................ AAGACTCGATCATCGCCGCCACTCAGCGTTTG 2892181 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 2892121 28 100.0 32 ............................ AGTTGGCGAGCTGGGCAACGTTGCTCGTCGAA 2892061 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 2892001 28 100.0 32 ............................ CGGATGAACTGCTCAGTGTTCATGCTGCCACC 2891941 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 2891881 28 100.0 32 ............................ ATCACCGCCTTGACGCCGACGAAGGCAACAGC 2891821 28 100.0 32 ............................ GTCGCGACAAGACCGAACCCGACAGAGAACGC 2891761 28 100.0 32 ............................ ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 2891701 28 96.4 33 ....C....................... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 2891640 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 2891580 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //