Array 1 36176-37481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYHN01000025.1 Clostridium sp. FS41 CLFS41_contig000028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 36176 33 100.0 34 ................................. ATCATCACCTCATTCCATTTTTCCTCACATAGCT 36243 33 100.0 34 ................................. ACTTTGAAGCATAGGATACCCCTCAAGGTCACTG 36310 33 100.0 34 ................................. CATACAACTGTCAGGACTTTGTAAATATACACTC 36377 33 100.0 34 ................................. ACTTTGAAGCATAGGATACCCCTCAAGGTCACTG 36444 33 100.0 34 ................................. CATACAACTGTCAGGACTTTGTAAATATACACTC 36511 33 100.0 36 ................................. TTTGAGAGAATCAAGGAACGCCTGGGAGAGGATGAT 36580 33 100.0 33 ................................. ATGATAAGCATCTGGTCACGCGTATCAGTGAAG 36646 33 100.0 34 ................................. AATACACTGTAGTGGCGACCCCGAAGATTGTAAA 36713 33 100.0 35 ................................. TGGAAAGCCAGCCATTAATAAACCGGTTGACGCCT 36781 33 100.0 33 ................................. ATGGTTAAGAATTCGTCATAGTTAGAGCCTGTG 36847 33 100.0 36 ................................. CCCAATTGACAAATAGTAATTTCCCTTAATCCATTC 36916 33 100.0 34 ................................. GGAAATAATGATTATTGTCCGCTCATAAAAGGTG 36983 33 100.0 33 ................................. ATATAGTCCATGCCATCACTCCCCAGTGACCGC 37049 33 100.0 35 ................................. AACGAGTATCAAACACGCTACAGACGTGAAAAGTG 37117 33 100.0 34 ................................. CCTATACAGATTCAAAAGGGAAGCAGACGACTTG 37184 33 100.0 33 ................................. CTGCTTTTTAGAATAATTTAAGCAGTATGTTAA 37250 33 100.0 33 ................................. CATGGAAAAGAAGACTGCCGACACGAAAGCGGC 37316 33 100.0 34 ................................. CTTATATTATGCACAGTCCACACCTGATACAGTG 37383 33 100.0 34 ................................. TCTGCGCATGGCGGTTATAAGTCCACCCATGCCT 37450 32 81.8 0 ..............A.........C.-..T.GC | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.1 34 GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Left flank : GTCCATATTCTGTAGGGAAGGTTAATGCTTATATCAATTCCTTGAAAGACTTGTTTTCTGAAACTTTAATTTGGACCTTATCTATCATTACGGAAACGAGAAGAACATTAAAACATAAAGATAGTGAAGAAATCAAAATTGTGGAAAACGATAAGCTGGAGAAATATCATTTAAGTGATTTTGATATCAGAAATTTAAAAAAATCTCTTTGCTCTCCTTAGAGGTTCAATTGTTAAGTGTATGTTTACATATTATGGGATTGGAATAAATATTGCTTTGGGGTACAAAACTGAAAGTTTGGATTAAATATTATCAGAAAAAGGGAATACAAGTATTATGGTGCGAATCCCAAGCAAACATAAAATGTCTAGGAGATTCGCATCAAAATAAAGCACATAATATTTGATTTCGAGAGAAGATGTAGTATAATATGAAAAGAGATTTGTGCATTGTGTATGAGGGTAAGTTGTATTTAATAGTAAATATCATGCATAATTGCA # Right flank : CAGACTTGAACTTGGTAATTTTTCAATTACGATCATACCAAAGGAAAAATGTCGGGGTGTATGAATTAATTTCATATACCTCGACATTTATTATAGAATCATCTTATCAATTTGAAAGTCACAAAAATCGAAATCCCCTCAGAACGCTCCATCACACTTCCTGTCTAAACATCACCCGCGAAGCGTGGGCTCCGCCCCGGTGGATCCTGTTGTGGGCTGTTTTGATCGTCACACTGTTAAAGCCATCTCTGGTGTTCCGGTTTGGAAAGATAAAATTTTTTGCACTGGAGGTTATTGTGACTCTCAGGCAATGACCTTTGCAAAAGGTGTGGGACAGTTTGGTAGTACGGATTTTAACAGGGTAGATCTGTCCCGGTTCCATAAAGTCCGGGTGTTCAAACTGGTTACGGTACCGTACGCTGAGGACACCGTCTGCCAGTTTCATGGAACGTCCCTCCCTATCCATATCCGTGATGCGCACGACCAGATCCGTATCCTCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 90254-91409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYHN01000040.1 Clostridium sp. FS41 CLFS41_contig000045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 90254 32 100.0 33 ................................ GCTGCAATACTCTGGTTAGTCGTCTTGGGGGTA 90319 32 100.0 33 ................................ CTGTTTGCAAGCGCCTCCTGATACTCTGCCTCG 90384 32 100.0 35 ................................ AAAAGTGGCTGAAGGGGGAAAGATTGCGACAAAAG 90451 32 100.0 34 ................................ AGTATAATGTTTCCAGCTTTTAACATGGTTAAAT 90517 32 100.0 33 ................................ TTTAACAGTGACTGGCTACCAAAAGAAGACGAG 90582 32 100.0 35 ................................ ATCATCGCGTTTGCGCATTTCGTCAGTTACTTCTA 90649 32 100.0 34 ................................ CTCTGGCACTGGCGAAATTAGAGATAACACCCAA 90715 32 100.0 37 ................................ GCAGCAAGCTGGAAGAGGCTGCTATAAGTATTGGAGA 90784 32 100.0 33 ................................ TGTCAGACTATTACCGGTTACTGCCCTCTCATT 90849 32 100.0 36 ................................ ATGTTTACCCCTTGGTTATTTCGTAATCTGTGCAGC 90917 32 96.9 35 A............................... ATATGTTGGCTTTCGTTATATCACATATGGTGTGA 90984 32 96.9 33 ..........C..................... CCCCATCCCAGGCCAACGCAGCGCCCCATCCTG 91049 32 93.8 34 ........T.C..................... ATATATAATTTTGTACGTGTCATTCCGTGGGTTC 91115 32 93.8 33 A.......................G....... GCTCATCCAGGGTGACCTTGAAGCCATAACCAT 91180 32 100.0 36 ................................ AGAATATTTTGGTTATGGAGTAGAGGGGAGAACTCA A [91197] 91249 32 84.4 33 ..........C...A.C....CA......... CCCTTGACATTACGCCCAAATACGCATATAATA 91314 31 90.6 34 A.T.......-..................... AAAACTGATCGGGGGAGACTTGTCTACGGCGTTG 91379 31 84.4 0 ..........-.........A...G..A.T.. | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 96.7 34 GTCGTTCCCCTTGCGGGAACGTGGATTGAAAT # Left flank : TGCATATCCGCCATTTTTGTGGAAGTGAGGTCAGAGTTTGCTGGTATTGATTACATATGATGTGAATACAGAGACAGCAGGAGGAAAAGCGAGACTTAGAAAGGTCGCCAAGCAATGCGTTAACTACGGGCGGCGAGTTCAGAATTCGGTATTTGAGTGTATCCTGGACAATGCGCAGTGTGTGATGCTGAAGTCATTATTGACTGAAATTATTGATGAAGAGGTCGACAGCCTGAGATTCTATTATTTGGGAAATAAGTATAAAACAAAAGTAGAGCATGTGGGGGTTGATAAAGGAATTGCAGCAGATGAGACATTGTTTTTGTAGTGCGAATGTGAAGCACACATGAAAAGTACGGGGGATTCGCACTGGGAAAATTGCACAAAAGACGCTTGGTTTGGGAGGGAGAGGCGATGATTCTGCTGTGTGGTATTCAAAGGAATGTATAGATGATATAAAAGTGTGATTGTTTTGTGTTATGATATTGGATATATTTGCA # Right flank : TTGTAATATGACATCTATAAAAAGGTATATGGAAGATATTGATAGAGAAAGATATTAATAAAGAAAGATGTAAATAAAGAAGTATCTTTGCAAAGGGACACCTCAAAAAGCGGGGAGTACAATATTTTCGGCCTAAGAATATCCTTGACAGATTGGAGACAGCAGTATTCGTCTGTTTGAAGTCATCTAAGATGATAAAATATGCAGCGATTATGGTATTTGGAGGAAAAATGGAACAGTTATCTATATTTGAGTGTATAAATGGAACAGAAGAAAATGGAACCCTTTCCACGGATGAATTGGCTGCAATTCATCCACGGATGGTTTCGTTATTTAGCGGTTGCGGCGGATTGGATTGGGGATTTAAAGAGGCTGGATATGATATTGTTTATGCAAATGATTTTGATAAGGATGCACAGAGAGTGTATGAGGCAAATTTTGGCGAGATGGACGAAAGAAGTATCCTCGATGTACCGGCAGAGGAAGTGCCGGACTGCGAT # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGCGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA // Array 1 74923-74213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYHN01000092.1 Clostridium sp. FS41 CLFS41_contig000101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 74922 33 100.0 34 ................................. GCACTGTGGTAAGGATCATATGGGAACGTGGAGA 74855 33 100.0 36 ................................. CCAAAATCCCTGAAAGTGATATGATGCGGCTTCAGC 74786 33 100.0 34 ................................. ACAGGCATCTTCCAGTTCTCGCATTTTGTCCCTG 74719 33 100.0 35 ................................. ATTTTTGTATTGTACATTATCCAGGCTCGTTATGT 74651 33 100.0 34 ................................. GGATCCCTGGGAATCATATCCTCCGGTACGTAGC 74584 33 100.0 35 ................................. TTACGGATGATAAACTATCTGAAGCTGAAAAGCTG T [74570] 74515 33 100.0 33 ................................. AATTGGATAATAAAATTAATTCTGTAGAAAATC 74449 33 100.0 34 ................................. CCCGGATTTGACATGAATGACGAACTGAACAACC 74382 33 100.0 34 ................................. ATAATGAGACTGGCTGTAAAACATGGAATAATGG 74315 33 100.0 35 ................................. ATTAGAAATTAAAATCAGCATGCGGAATTCTGACC 74247 33 87.9 0 ............A...AA.........A..... | GT [74221] ========== ====== ====== ====== ================================= ==================================== ================== 11 33 98.9 34 GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Left flank : GCAGGGAATGAGCGGAAGCCCGATCATACAGGATGGGAAGCTGGCCGGGGCGGTGACCCATGTGTTTGTGCAGGATGCGAGCCGGGGGTATGGGATTTTGATTGAGAATATGTTGGAGCATTGAGGGTGAGGGAGGATAGAGTGGGCATATAGGTGCTGTGATCCTGCGTTCTTGGCTCTTATAAGCCTTTGTCCACTCTATCTTATGGAGTAAAAATTTTTGGTGCTTAGACGAAGTAGTGAGCGGATAGAGGAAGAGATGTAAGGGGAGCAAGATTTTGAACCATAATTTTGGTATATAAATACTTGATAATGTAAGTTACTATATTGGTGCGAATGCCAAGTGCACATGAAAAGCATAGGAGATTCGCACTTGGTTTTTAAGAAAAATTTGAGAAAAGAGAATAATTTAGATATCATGGGTTGTAAAATGATTAAGAGAGTTGTATGATTTGTATAGAATATGTCTTGTATAAAAAAGAAAATTAGACATATTTGCT # Right flank : CCATTGTAATATTGATGTCGCTGCTCCCTAAACGGTCAGCCCCAGCATAGGTTAATTCAATCCGAATAAATTAAGTCATATAATATAAAAAATATTAAAACATCAGATGAAAGCACTATTCTGATAAACCCGACTATCCTGTTCTTCCAGCGTACCGAATAAGTGATCGACATGCAAAAGAAATCAAAGAAATCAAATCACCCCAATACAAAGACCACATAGCCTCCCTCCATTAATTATTCCAATACACCCATCTTCCCAAAATAACATCTCCAATTTTTCCCAAAAAACAAAAACATCACTTCTACAATAAAGAAAACCAAACACACTCCCATTCCAATAACCCAAAAGTAATCACACGTTCAAACATCATATGCCTCAATTATCCATCACACTAAAAAGCATTCAACGATCATATACGGATCCTTCACCTATGTGGCAATGGAACAAAAGAAATTTTTATTCAGAAGTGGCGCAGCCTGCCTCAGAATATCATATCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //