Array 1 329187-331166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECQI010000001.1 Salmonella enterica strain S6 S6_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 329187 29 96.6 32 ............................A GTACTCCGCGTGGGACAATATCGGCAAAATGG 329248 29 100.0 32 ............................. TTTTCGATATTATGCCGCTCGGCCCAATAGTC 329309 29 100.0 32 ............................. ACGACGCTCGAACTGAACGAATTGCTACCCAA 329370 29 100.0 32 ............................. GCATCCAAAATTCTTCAACAATAGTCAACATC 329431 29 100.0 32 ............................. ATTATTCGTCAATTGCCGTTGCAAATAACGGC 329492 29 100.0 32 ............................. CCCGCCGATGCACTCAAAATTAGCCGCCTGAT 329553 29 100.0 32 ............................. ACGCCCTCGTCATCCTGCATGATGTCCATCAC 329614 29 100.0 32 ............................. GAGACCACACGCACTGCGTAAAGTTTTCAGGT 329675 29 100.0 32 ............................. TTAGTCCGGTGACGTACCCCGCGTACCGCGCC 329736 29 100.0 32 ............................. TCCGTGTACCACACGAAATTGCTGACGCTGTG 329797 29 100.0 32 ............................. CATTTAATGCAAAGTAAATCGACCAATAAATA 329858 29 100.0 32 ............................. TCAACACCCTCAATAGATTTGATAGAGTCGAG 329919 29 100.0 32 ............................. GAGCGCCTGCAATCAACGTTTACCGGCTTAAA 329980 29 100.0 32 ............................. ACGAACTGTTATTCTGGCTGCTGTCACAGTCA 330041 29 100.0 32 ............................. CTGTCGTCGCCGTCACTGGGTAAAGGCTGGTG 330102 29 96.6 32 ............................C GCTTCCACGGATTTAACTGCATTCTCGGCCCC 330163 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 330224 29 100.0 32 ............................. GGCGTTTTGTCATACTCGTCCGGTACTCTGCA 330285 29 100.0 32 ............................. TATTAAAAAACCAAAAAGACAAAATGCAATTT 330346 29 100.0 32 ............................. GCAAAAAATGCCCGGATAGGGTTTCCGGCGTG 330407 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 330468 29 100.0 32 ............................. TCTGGCCCATGCAGGCTTTAATTGAGAATGCA 330529 29 96.6 32 .............T............... AATTAGAGCTGGCGCGTATAGCGCTGGCAGCG 330590 29 100.0 32 ............................. ACAAACAGCCGTGGCGATGTTAGTCGCGAAAC 330651 29 100.0 32 ............................. TTCTCTACTACAAATCAGATCTGGACGCGTTT 330712 29 100.0 32 ............................. ATTCCAGCTATATGACACCGACGATCCTGCGC 330773 29 100.0 32 ............................. GGGCACATAATCCACACCCAACCCTAAACCAA 330834 29 100.0 32 ............................. CCGCCACCGTCCGTTATTTCGGTGCGCTGATA 330895 29 100.0 32 ............................. CTCTGAGTGCATTAACCACAATAATTGCTGAT 330956 29 100.0 32 ............................. ATTTTCCGGGGGCCAACTTTGACCGTTCGCGG 331017 29 100.0 32 ............................. GCTGGCCGTATGCGCCTGGAATATCTAATCAT 331078 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 331139 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 347430-348862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECQI010000001.1 Salmonella enterica strain S6 S6_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 347430 29 100.0 32 ............................. GACCTGGCTATGCAAACAACGCACGCGCGGCT 347491 29 96.6 32 ............................T GGCCGGTACATGCCAGAACGCCGGTTACGTCA 347552 29 100.0 32 ............................. CCAATATTACGGGAACTATAAACGCAACTAGC 347613 29 100.0 32 ............................. ATGAGTTGATGTGCCGCGCTGCGTCAGACACA 347674 29 100.0 32 ............................. TTGGAAGCCGCAGAGCAGGAGCGGGAAAACTG 347735 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 347796 29 100.0 32 ............................. TCGGCATCTGTGCCATCCTGCCCTCGCGGAAC 347857 29 100.0 32 ............................. GGTATGATATTTGTGAAAACAAACATGTACTC 347918 29 100.0 32 ............................. TCATTGAAGAACCAACACCGGCACTATGTCAA 347979 29 100.0 32 ............................. CGGATATTCGTCTGATTGGCGACCTGCGCCGC 348040 29 100.0 32 ............................. GGTTTCTCTCGCCTGGATATTGACAGGTGAGA 348101 29 100.0 32 ............................. GCGCTGGGCTGAGCAGACACGCTTCGGACAGA 348162 29 100.0 32 ............................. GCGGCATGGAAAGAATGAGCGCCAGTTTTAAA 348223 29 100.0 32 ............................. TCGCAGCGAGTACCGGTATCGCCAGTGCGGTA 348284 29 100.0 32 ............................. AATATGAGCGGATTAGGATATATTCGAGGCGC 348345 29 100.0 32 ............................. TGTCGGAATATGCAGGCTGATTTTTCGTCTGC 348406 29 100.0 32 ............................. GTTCCGGTAATATTGGCTTTTTTAGCTATCAA 348467 29 100.0 32 ............................. GTTCTCAACGGGTGATGTAAATCACCAGAAAG 348528 29 100.0 32 ............................. CCGCTCCATTGCTCTTTACTTATTGTCATCAC 348589 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 348650 29 100.0 32 ............................. TTATTTGTCCGCCGTACCAGGAACGTTTCGCC 348711 29 100.0 32 ............................. GAAATGGAAGATGGCGAGACCGAGGAAACCGA 348772 29 100.0 32 ............................. TTTATGGACGAGTTCTGGAAATGGTTAGCTGA 348833 29 96.6 0 ............T................ | A [348860] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAAGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //