Array 1 7257-6496 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWGV01000013.1 Streptomyces sp. GZWMJZ-114 NODE_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7256 29 100.0 32 ............................. AGCATCGCCTGCCGCGCCACGATCGTGACGAG 7195 29 100.0 32 ............................. TCTGATTCTAGGGCTAGCTCTATCAGGCGGCG 7134 29 100.0 32 ............................. CGAGGCCAGTACTCCTCGCGGCCCGTCTTCGG 7073 29 100.0 32 ............................. GATGCGGCGGCCGAGCTGGAGGAGCTGGGTGA 7012 29 100.0 32 ............................. CTCGGCGACGGCGTGGACGGCGAGCGGCTCCC 6951 29 96.6 32 ............................C TCCCCGAACCCAAGAGCATGCAGCAGAAACTC 6890 29 100.0 32 ............................. GACGACGACGGGCTGTGGACGCTCGACGAGGT 6829 29 96.6 32 ....C........................ ACACTGCCGACTTTCACGCCCATCGTCACGGG 6768 29 100.0 32 ............................. GCGACGTCGTGCGTGGGGCGGGTGAGGGCGGC 6707 29 93.1 32 ...........T..C.............. CTCGGCGGGTCTGTCGCTGGCCCGGGTCGGGT 6646 29 89.7 32 T..........T..C.............. GACTGCCCGAAGGCCGCGAGCGTCGGCGTCGT 6585 29 93.1 32 ...........T..C.............. GTGCCCTCCGCCGAGAGGGTGACCGTCGCGGG 6524 29 79.3 0 ...T..C....T.AC.........G.... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.0 32 GTCCGCTCCGCGCGTGCGGAGGTTTCCCG # Left flank : CCCCGCATCGTCCGCGATGTCCAGAACCTCCTGGACCCCGAACACGCGCGCCCCACGGAGGACGACGAAGACCTCGACGAACAACTCGTGGACCTCTGGGATCCCGTCACCGGCCCTCTCCCCGGCGGCACCAACCACGCCCCCTGACCCGAGGGGCCCCTGCCGTGCCCGCCATGACCGTTATCTCCGCCACTGCTGTCCCCGACCACCTCCGCGGCGCCCTCACCCGCTGGCTCCTGGAAGTCACCCCCACCCTCTACGTCGGAACCATCTCCACCCGCGTCCGCACCGAACTCTGGAACAACCTCACCGCCTGCCTCACCGACGGTAGCGCGGTCCTCGCCTACCCCACCAACAACGAACAGGGCTTCACCCTCCACACGGCAGGCCCGCAGCGCCGCGAGACGGTGGACTTCGACGGGCTGACGCTGATTGCGTTTCAACGCCTGCCCGGTAGTCAAGAAATTGCAAAGCCCTGCTAACGTCGCAGGTCGCGAAGG # Right flank : GGAAACGCCCCCGCGACTTCGGTCGTGGTGCCGTCCGCTCCGCTCCCGCGAAGGCGAGGCCATCGGTTCGGGATCTCGGGACGTGGGGTCAACGAACCCGCCGTGCATTGAGCTTGAGGGTGACATCAGCTGGTCCAGCCTTCCCGGAGCGTCGACGGGATGCTGGACAGAGCGCGCGGATCCGATGTCCCCAGGGCGCCGCGCGGTGCGTATCCTGAGAGTTGCCTTAACGGAGTTTGGTGGAGTCGAGGGCCACCAACTTAGACAACTTCGCTCAGGGGAGTCCCTGGTTGGCTGAAGCTGTCGAGCGGGACCGCGACATCGCCTGAAGCGTCGGCTGCTGCCCGGAGAGAATGAGTATCACGCCGTACAGAGACTACGCCTGCTACCTGGTTTCTGTCCGAGTGCACCTTATGTGAGGGCGAGCGTGCCAAGGCGAGCACGCGTGAGTGCCACATAGAGGGCGCGATGGTCGGCTTGCGCGGGGTCTAGGCCGAGCG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCGTGCGGAGGTTTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 17275-18156 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWGV01000013.1 Streptomyces sp. GZWMJZ-114 NODE_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17275 29 100.0 32 ............................. TCGGAGGAGTCGATCTACAACGAGGTGATGCA 17336 29 100.0 32 ............................. ACCGAGGTCGGGTCGGCCAGCTGGAAGGCGCT 17397 29 100.0 32 ............................. AACACGTCGGGTGCGGGGCGGTGTTCGGCGGT 17458 29 100.0 32 ............................. TCCCCCTCGTTGCTGTGTTCTTGGAGTGACAG 17519 29 100.0 32 ............................. GCCCTCACCCTCGTGGTCAAGGGCCTGACGCT 17580 29 100.0 32 ............................. AGGGCGGTGGCGCGCTCGTTGCGGGCGCGGCC 17641 29 100.0 32 ............................. CCGCACCCGGGGCCCGCAGACGCGACCTGGTT 17702 29 100.0 32 ............................. ACGCCGCCGGAGCCGGAGATCCCGGGCGAGGG 17763 29 100.0 32 ............................. ACGGAGACGCTCCGCGAGGTCGAGCGGTGGGT 17824 29 100.0 32 ............................. CGCACCGACCTCACCCCGCAGCCACCGAAGGA 17885 29 100.0 32 ............................. CAGGATGTAGCAGGACCGGGGAGACGCCGAGA 17946 29 100.0 32 ............................. GCCCTCGTCCACGCACGGAGTTCCGAGCGCAC 18007 29 96.6 32 ............................A GTGGCGCTCCAGGCGTCGCAGTTGCAGAACAC 18068 28 96.6 32 .................-........... CTCGACCCACGGGGTGGGGTTCTTGTCGCGCT 18128 29 89.7 0 .G........................C.C | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTCCGCTCCGTACGCACGGAGGTGAGTCG # Left flank : ACGGAGGACTGATCTTCCCCAAATCGTGCAAACCCGCCAAAAACGCTAAAACCGCCCGCGCCTCTCCCACCTCCACCCCCAACTCCCGGGCGACCTCCTCGCGGAGCGAAGGATCCATGAGGGCGTCCCACAGCACGCCGAAGACCGCGGCGACATCGAGCAGATGACAGATCACCGGGTAAGGCCACCGAAGCCCCGACTCCTTCCCCCACAACCGCACATCAAGAACGCACACCGCCGAAACCGTCACATCACGAGCCACGCCCACACAAGTAGCACCCACCTCTGACAATGGCCCCCGACCAGCGGAAATACCCGCGCCAAACAACCCGAGCCTGCGGCGACTTCAGCCAAAGGGCCGCCGTGAAGGCACAGGTTCCAGGGGTCTCTTCCAGGAGCATCTGAGATGCTGACTTCGGCAGCGGAGGAGATAGTGGAAGTGCGCCTGCGCATCAGTCAAGAACTTGCAAAGCCGTTCTAACGCCGCAGGTCGGGAAGGG # Right flank : CTGCGCATTACGAGGCCGTTAGAGGTCGTGCTCTCCAGTCCCACGCCATGCCGCCCAGTGCTGTTTTTCCTGATCAAACCACGTGCGCCGGTCCACCGCGTCCGTCCTGTGCCGCTAAGTCCGAGGGCGTCCTGCCACAACGCTGCCACGCGTTGGGTTCCAACCGAGCAGTCGACGCCCCTTCTCGGCACTGTGGGGGTACACCAAGATGTTCGCCACGACGACTCGCCCACCGATGGTCAAGTCGACCCGGGGCGCGGTTCCGATCTTTCGACCGCCCCGTTTTCCCGGGGCCGCCCCGAACCGCCGGAGGCGGGCAGGGAAGAAGCCAGGGTATGACCGCCATCCTCGTATCGATCGTGGGCGTGCTGGGAACCGTCATGAGGGCCGCCCTCACCGCCCTCGCCGCAGCACGTTCGGAACAGCGCACGGAAAGATCACAGGTGCGCGTACAGCTGAATGACCTGTGGGGTGAGCATCAGCGATGGCGCCGTGAACGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGTACGCACGGAGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGTACGCACGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19210-17349 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWGV01000018.1 Streptomyces sp. GZWMJZ-114 NODE_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 19209 30 96.7 31 .............................T CCGTGAGTACAGGACGTCGGACATGGGTTCC 19148 30 96.7 31 .............................C GTCAGCGCGTGCGCCTGCTCGGTGAGCGCCC 19087 30 100.0 31 .............................. GCCTGTTCACCGCAGTGACCAGCAACTAGAC 19026 30 100.0 31 .............................. CGGAGTCGTCCATCCAGGCGTGCCGGGGCTG 18965 30 100.0 31 .............................. CGGAGTCGTCCATCCAGGCGTGCCGGGGCTG 18904 30 100.0 31 .............................. CGCGCGCGAGGAACAAGATCATCCGCTCACC 18843 30 96.7 32 .............................T GCTTCGCGGGCAGCGCGGCTATCACCTGGTAG 18781 30 100.0 31 .............................. AAACGGGGAGGAACTGTGGTGCACGAACGAT 18720 30 100.0 31 .............................. GGTCAGGGTCGATTTCAGGCGGTGGTCATGT 18659 30 96.7 31 .............................A GGGCGTCGGCGGCGACGTGCAGGCCCATCAG 18598 30 96.7 31 .............................A TCTGACACGGGATCTCCTTCGTGAGGGTTCG 18537 30 93.3 31 ............................TC ACGCGGCCCAAGGCACGCCGAGCGCGGTGAG 18476 30 100.0 31 .............................. GCGTCCGTAGTCTGTGAGTCCGGGACTTCGG 18415 30 96.7 31 .............................A CCGTGGCGGACAAGTCCCCCGTGCGCGAGAA 18354 30 100.0 32 .............................. ACCGTCTCAAGGCTCGCGACGGCCTCAAGCAC 18292 30 93.3 31 ............................TC GAAACCCGCCCCCCGCCTCACCGATGCTCAA 18231 30 96.7 31 .............................T CCGGGGTCACGGAATCGATGGCCTCGGACAT 18170 30 96.7 31 .............................C TGGGGTTCTCCGAGGACGAGATCGCGGACAT 18109 30 96.7 31 .............................A GCACGCCGATGCAGGCCGCGCTTCAAGGCGT 18048 30 96.7 31 .............................T ACTCCGGGAGGCTCGCGGCGAGCGCGCCGCC 17987 30 100.0 31 .............................. GGCACCCCCCGTGCCAGCGCTACGGGCCGCG 17926 30 96.7 31 .............................A CCTGTCGGTACTCGGCCTTGGCCTGGAAGCC 17865 30 90.0 31 ..........T...G.............T. CCAGGCGGGCCGCGGTCAAGGTGACAGGCGT 17804 30 93.3 31 ............................TT TCGCGATGGCGGTGGTCATGGTGCTCACCGG 17743 30 100.0 31 .............................. AAGTGCGGCACTTCGAGGACGGCGGTGACAG 17682 30 100.0 31 .............................. GGGGGTGGCGGCTCGCGGAGACGCAGCGCCG 17621 30 100.0 31 .............................. AACTCGTGCACGTTCTCTCCTCCGCTAGTCG 17560 30 96.7 31 .............................A GCGCGCACTCTGAGAGGGCGCCATGAGCTAC 17499 30 96.7 31 .............................C GCTCGCCGTGCTCGACACCGGACTCGGCAAC 17438 30 90.0 31 ...................A......G..C CGACGGCAGCGCCGGTCTCGATCCTGGGGGA 17377 29 73.3 0 .....T....A..C.C...TC...T-.... | ========== ====== ====== ====== ============================== ================================ ================== 31 30 96.5 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : ATCGCGGTCATGCGGGCCGCCGTCGTCGCCCTGGAGTGCGCGGACGAGCCGGTGAGCAAGGCGCGGGCGGACCTGGAGTTCCACGAGGCCATCGCCGTCGCGGCCGGAAATCCCGTACTGCGGATCATGCTCTCGTCCATCAGCGGGATGATGTTCGAGATGATGCTGCGCTCGAATTCGGACCCGAGCATCGCCGAGCCGGGCGTCCCGCACCACCCGGAGATCTTCGAGGCCATCGAGCGCCGCGACGCGGAGCTGGCGGTCGAACGGATGCGGGCGCACCTGCGGTTGGGACTGCGGACGTACGGGCGGGACCTGGACGTGCAGGTGGATGTGATGGCGAAGCAGCACATTGAGATGTTGTTGGGGGAGGGGCGGGGGTGAGGGGGGACGGAGGTCGGGCCGCCATGGGTTGTATGTCGGATGTTGTAGATATGCCGGAATTCGCAATTGTTGCGCGAACGGCTCAGGGGCGGGGGTAAACCCCCAGGTCGGAAAGA # Right flank : CTCCAGCGGGATGGGCGAGCATCAACGGCGAGCGCCCCTGGTATCTGACGGCTCTCCTCCCGCCCCCTCAATCCCTCCCGCCCCCCTACCCTCCCCCCTCGCCTCCTGCTAGCCTCCCTCTCGCCCGGCCCAACTGGTCCTACCAGTCGGACCGCCAAACCATCCGCCCCGAGGAAGCCCCCGCATCCGTCCCCCACATCCACGTCCTCCCCCGTCCCCCGCCCCAGAGAGGTGGCACAACGATGTCCACCCCCCGGCCCCCGGTCGGCCGCCCCGCAAGCCCCCGGCCCCCGACCGGCAACCCTGCCAACCCTCCAGGCCCCGAGGCCCCGGCCTGCCGCCCGGCAAGCAGCACGCCCGCGCGCCCCGAACCCCCAGCCCCCCACCCCGCACGCAACGCACCCCCCACCCCGCCCCCCTCCACGCACCGCCCCCCGCTCGACGAGCCCGCATCCCGCCGCCCCCCAGCGGAGCGCCGCCCCCACCCCGAGCCCGCCACA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21433-20489 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWGV01000018.1 Streptomyces sp. GZWMJZ-114 NODE_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 21432 30 100.0 31 .............................. CGGGCTCGACGGCACGCTCACGGAGCACCCG 21371 30 96.7 31 .............................C CTTGGGGGAATTGGGCAGGAGCCCTCTTCTA 21310 30 96.7 31 .............................A CGGCCGCGCTCACGGGCGGGATGTCGCGCGA 21249 30 96.7 31 .............................T CTTTCATGCGTACTAGAACGCTAGCGCTTGA 21188 30 96.7 31 .............................C TGAGTGAGGCGAACCGTACGACCGCCGGGGT 21127 30 96.7 31 .............................A CCGCCGCCTCGACGCAGTTGTTCGCGGCGCT 21066 30 96.7 31 .............................A CCACCCTCTTCGGCGCCGCCGCGCTCGCGCT 21005 30 96.7 31 .............................T CCTCCTTGGGCGTGTCCACGAAAACCTGCGG 20944 30 96.7 30 .............................C CCCGGTCGCGTGAGGACAATCGGAGTCATG 20884 30 100.0 31 .............................. CCGCCGGGCTCGAAAGCAGCGCGGACACGGT 20823 30 96.7 31 .............................T CCCGGAGGGCGAGCCGGTGCGGCGGTGGCTG 20762 30 100.0 31 .............................. ACGACGGCAACGGTCAGGCCAGCCTCTGGGA 20701 30 96.7 31 .............................A CGGCGTCACCATGAGGCCCAGGGGCGGTGAC 20640 30 100.0 31 .............................. CCACCCGCCGCGCCATGCGCGCCGCCATGAA 20579 30 90.0 31 ...........A.............T...T ACGCACGCACGCTCATCGGTATCGGGGAGGA 20518 30 93.3 0 .........................T..G. | ========== ====== ====== ====== ============================== =============================== ================== 16 30 96.9 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : TCCGCCAACGGGCGGAAGGTGGCGGCCCGTGCGACCCCTGGCGCGTGACGCGGAACGGCTGCTGTACGAGGACACGGCGGTCCCCGGCTTTCGCGTACGGGGCTGGTGTCTGATGTGTGGGAGGTACTCGCCGGAGGGCGTGAACGCGGACTCGGCGCGGATGTGGTGCCTGGAGCACAACCGGACGACCGGCCATGCCAGTTATCGCGTGGCAGAGACGCAGTACTTGGTGGTGGCCCGGGAGGTGGGGGAGCCGGGGCGGTGCCGTTGTGGGAGGGGCGAGCCGGAAGGCTGAGGGGGGCGCGAGGTGAGGCGGTGATGCGGCGGGGAGTGCCGCTGGCCGGCTAGGGGGGGCGTGGCAAGTCGGAGCGAGGTGCCGCGGGGCTAGGCTTCGATCGGATCGCGCCTTGCGTCGGCGGTTCGCTACGCCCGAAAGGCCGGATTCCTCGATCCTTGCGCGACTGCCGCCATCGGCCCGCTAAACCTGCTGGTCACACAGT # Right flank : GAACGGCGCGGAGTCGCTGAAGTGGATGGGCTGCTCCCCGCGTGCGCGGAAGTTTCCGCTGCGGGACGGCGCCGCAGGATCGGCCTACGCCGATCCGAACCGTTTCAACAGCAGTTCGTCCCCCGCGCGGAAGCGCTCGGCGCCGCCCTCCTCCCACGTCACCACCACGAACAGGCCACCCACGTACGACCACGAAGCCTGCTGGCTCACGCAGGCCGGGGGGCTCGGGGCGCAGCTCGCGCGGCGGCTCAGTGGTGCGGGCGAGCCGCTCGTCGATCCCGCGCGACTCGGCCTGGGCCGCTTCGGCGGGTGGGATGCCGGTCGGATACGTACGCCGCGCCCCAGCTCTGCTCGGGGGTGCGCGCCCGTCCGTCTTCGCGATCCGTCCCGCTATGCTCCACCGCATGTCCACCAGCACCCCCGAGCCCGCGCGGCGCGGTCTCCTCACCGAGCGCATCGCACGCGAACTAGAGCACGGGATCCGGACGGGGGAGTACGCG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23835-23622 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWGV01000018.1 Streptomyces sp. GZWMJZ-114 NODE_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 23834 30 93.3 31 ...........................T.G GTTTCCTCAAGCCGATGTTCGACGGCTTCAT 23773 30 100.0 31 .............................. CTGAACTCCCGCCTCACGCCCCCCGTCGAGG 23712 30 90.0 31 .........................C.A.T CACCGGCACTGAGGGACTGTTCGGGCCGCTC 23651 30 83.3 0 .....T......T.C...C......C.... | ========== ====== ====== ====== ============================== =============================== ================== 4 30 91.7 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Left flank : ACCCTCCGGGCCGTACGGTACGGGGGGCGCGGACGGGGCTCTGCGAGGCGCGCGGCGGGGCCCACCGACCCCCCGTACCCCGGCCCCTGCCCCACCGTGCTCCCGGGGATGCCCACCGAGCGCCCCCTGTGCCGGGATTCCGGGGCGGGGGAGGGGGGTGGGGTGGGTTGGGTGCGGTGGCGGTGGGGGTCACCGTACGGGGAAGGCGGGGGGCGCGTCGTGGGGCCGAGGGCATCGGAGCCCTGGGGCGCGATCCGCTGCGGCGGCCCCGGGGGCGAGCCGGCTGCGGGCGGGGTGGCCGTGGGGGGCGGGCGTGGATGGGTGTGGATGGGCGTGGCCACGTGGGGAGGGCGTGGATGGGTGTGGCCACGCGGGAACGGGCGTTAGGCTGCGGACGGTCCGAAGAGCTCGGGCGCCGAACCGCCTTGTCCGAAAAGCCGGACCCTCCACTTCTTGCTGAATCGACGCCATCTCGAAGGCAAAAGGGCTGCTCACGCAGA # Right flank : GTGCACGGAGGGCGGCGCGTGCGTTGGCGACGGTCAGATGCGCGCGCTGTCGAGAAAGCGGTGCCACGCTGTCGGGCTGAATCCGAGGTGTGGGGAGGCAGGGTCCTTGGAGTCGCGAACGGCGAGATGGGCCGCGTGCAAGGCAACCTCGACGCAATTCGTGTCGTAGTTGGAGTAGGAGGATTTCCACCACGGAGGGCTCGCACGGCCGGTTGCCGACAGTAGCTCAGTGCGCATGACGTAGTGCGTCTCCAATGAGGTCGCGGCTTTCTTCCGGAGGAAGGGCCGCCATGTTGAGGCGCCGGAAGCGCGCGTTGAAGCGCTCGGCGGCTGCGGCCTCTTCGTAGTAGATGGTGCCCTCGCCCTGTTCGGTGAAGGCGATGTCGCCGGTATCCGCGAAGCGCAGAATCGCGAAGGGCCCGTAGAGAAGCACGTTGGCGGGGCTTGTCGCCGGCAGCACCTGCAACTCGACGGACGGGAGGGCGGCGGCTTCATAGAGG # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //