Array 1 1036971-1038340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023166.1 Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1036971 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 1037032 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 1037093 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 1037154 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 1037215 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 1037276 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 1037337 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 1037398 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 1037459 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 1037520 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 1037581 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 1037642 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 1037703 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 1037764 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 1037825 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 1037886 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 1037947 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 1038008 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 1038069 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 1038130 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 1038191 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 1038252 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1038313 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1054600-1055301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023166.1 Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1054600 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 1054662 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 1054723 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 1054784 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 1054845 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 1054906 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 1054967 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 1055028 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 1055089 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 1055150 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 1055211 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1055272 29 96.6 0 ............T................ | A [1055299] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //