Array 1 1599955-1602237 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027569.1 Megasphaera elsdenii strain NCIMB702410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 1599955 35 100.0 33 ................................... ATGAAGAAAAAGTTCGAAGAACGTCCACCAGTA 1600023 35 100.0 38 ................................... AACGTTCCACTTCTTTTTTGAAGATGCTACGGTTCACT 1600096 35 100.0 40 ................................... GCATTCTTAAACTTCTCAACAGAATGTAACTGTTCAGCAA 1600171 35 100.0 35 ................................... AAATGTTATGGCCCTGATAGCTTACATTCTTTCTT 1600241 35 100.0 35 ................................... TTAGTTACTAATGCTAACGATGATGACCAGGAGGG 1600311 35 100.0 41 ................................... GGTCGGAAAGTTGTACAATTTTTCGTAAAGCCGGATTTCAC 1600387 35 100.0 40 ................................... CTATTATAGTATATAATTACTCCAAAGTTTAGTATAGCAA 1600462 35 100.0 35 ................................... ATACCTAAGAAAATGGCCAGAGCGTAAACCATGCA 1600532 35 100.0 37 ................................... ATTATAGTATATAATTTCCCAAGATTTTGCTTAATAA 1600604 35 100.0 37 ................................... CCAGTCCATGAGGAAAGGAGGGTTTGAAAACGTGGTT 1600676 35 100.0 43 ................................... TCCTGAAGCTCCATTTCTTCTAACGAAGTAAGCTTACGGGTTC 1600754 35 100.0 37 ................................... CGGTTCAGGGGGATAATTGTAATCCCTCTTCAGCTGG 1600826 35 100.0 34 ................................... CTTCTGGCAATTTGTAGATGATATTTTCAGACTT 1600895 35 100.0 34 ................................... AACCGTATCCTTTATCCTGTTTTCCTTCCCAGGC 1600964 35 100.0 39 ................................... CCAATCGGGAAAATCTCTATTACTTTTATAGATTTCGTC 1601038 35 100.0 32 ................................... ACAGATTCGAGTTCTTTAAACATAATAGCCTC 1601105 35 100.0 37 ................................... TGCAAGTGGTGCAGCTCTCGGCGCTTTTCTTGGTGGG 1601177 35 100.0 35 ................................... TTCCGTCATCGACGATAAAACAATTATTCCAGGTA 1601247 35 100.0 39 ................................... TTGTTCTAAGACCTCGTTTCTGACAAGTTCTTCTGAAAC 1601321 35 100.0 35 ................................... TATTCCTAATAAGCTTAATATTAACGGAGGGAGAA 1601391 35 100.0 41 ................................... ACCATCTGGTCTGTTGCATCTTCAAAGACTTTATTCCCCTC 1601467 35 100.0 37 ................................... CATCAATACCAAATGCATGAGAAATTGGATCATTGAC 1601539 35 100.0 40 ................................... GCCACCGTCAGGACTTCGCCATCAAGCTGAACGATGTTCA 1601614 35 100.0 37 ................................... AAACTGCGAATACGTTTCCATTCTCAACCAAGGAGTG 1601686 35 100.0 40 ................................... AGGTTTTATTTTATAATTATTTAGATTAGATATTGGTGAA 1601761 35 100.0 38 ................................... GAGGGGATTCAAAGGGGAAATCCACAACAAAGGAGGTG 1601834 35 100.0 37 ................................... TTAAAGAGCCATTGTTTATTCACCTCCTTTTCTAAAA 1601906 35 100.0 40 ................................... AAATTGTTCTCGAAAAGCTGTCTTTAAGTTCTTCCGGAAT 1601981 35 100.0 41 ................................... CCAAGCAGGAATCCACCACAAAATATCGCTATGGCAATCAA 1602057 35 100.0 38 ................................... AAATACTTGGCCACGCATTTAACGACGTTCTTTATTTC 1602130 35 100.0 38 ................................... AAATACTTGGCCACGCATTTAACGACGTTCTTTATTTC 1602203 35 97.1 0 ..................................A | ========== ====== ====== ====== =================================== =========================================== ================== 32 35 99.9 38 GTGTTAATGGCCTTACCCCATTAGGGGACGGAAAC # Left flank : GAAGAAACTGAATGTAAAGAACAACGTATTTTTAATTGCTCGGGAATCGTGGAAGGGGAGCCGGAAGTTGGATTATTACCTGATTTTGAAGAATGGGAAGAAATACTACGCTTTCAGTCGGGAGTATTCCAGACGGTGTCACACCCTCTGCCAGGGGGCGACGCCCATCAATACGATTTTGAAAATTCGAGAACATAATAAGGCCGTTATGAATCTTAAAAAGTACTTAGAACGGATGATGCCGTTCCTGATAGAGTATTATGGAATCAGCGCATAACCGCTGAGAGGGAAAGCCAGCTCAATGACATTGGGCTGGCTTTTTTACGGCCATCATGATATAATAAAAACAGCTCAAGCGGGAGTGAAATCTGCCCCGCTGAGATGGTTATGCGGGATACAAGAGATTATGAGAATATTCTCACGGCCATTAACCGAAAAAAGACGACTCCCCCGCAAACCGACCTATCAGGCCAGTAACCAAGCGGCTTTCCAAGGAGGCT # Right flank : AGATGAAAGGAGGGAGCAATGATGGGGGATATCGTTGTTGTAGGTTGATAAAAAAGGTGGGCTAGGGGAAAGACTCCCCTAGCCCATTAAATTATGTGATAATGACTTCATCTTATTTGGAAGAGAATTTGCGGTGAAGGGCTCATGTTTTGATTACGCTCGTGCGTTATCTGGCATTAATTCTGGCCATGCACAGAATTCACGGCGGGACGCCTTTTAGGCGTCCCCTACGGTATCGCATATAGGCGATGATAATAATATATGGCCAATGGCCTTGTACGTAGGGGCTGTCCCGATGAGGGCAGCCCGCTGTGAGATTCCATCACAACCCGTTTGAGTATACTGGTAGGTTTTTAAGCGCTACTTTTTTCCTCGGATCTATTGCATAATGATTTTTTTTGTGCCAAAATTTTTTCTCCTATATGGATAACTATAGTGTAAGGAAAGAGATACTAAGTTAAGAGATATAGGAGGAATTGCCATGAAGAAACTGAAGGTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTAATGGCCTTACCCCATTAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1603220-1605090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027569.1 Megasphaera elsdenii strain NCIMB702410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================== ================== 1603220 35 100.0 39 ................................... TTTTATTTACTTCCCAGTTATCGGGAATAAATCCAGATA 1603294 35 100.0 32 ................................... TATAAGCATCCAAGAGATCACTATTTGACCCC 1603361 35 100.0 35 ................................... CCATTAGATTTAACTCTAGACCTACTCCAGAACAA 1603431 35 100.0 34 ................................... AGGTTTTGACTCCCTTCTTCTTTGCAAGTTTCAT 1603500 35 100.0 34 ................................... TTCCTTGAAAAACAGGTTAATCGTCAGTGGCTGT 1603569 35 100.0 40 ................................... TTAACGTCAGGGTGCTGCCATCGCTCTGAACAATGTTCAG 1603644 35 100.0 39 ................................... GCGATCTAAGTATTCGCGATCGTCAATTAAATACTTCTC 1603718 35 100.0 37 ................................... ATCCTGTTCAAATAATTCTTGTTCTGTCATGTTAATC 1603790 35 100.0 38 ................................... TTTCATAATAAATATCTCCTTTTCTTGTCGTTCAAAAA 1603863 35 100.0 45 ................................... CAAACCTGTAAGATCTCTGCTTTTCATATATTCGATATATGAAAA 1603943 35 100.0 38 ................................... AAGCAACCAACCTGGAAACGATATAGAAAGTTGCCGGA 1604016 35 100.0 59 ................................... ATATTCATAATTTTCAGAGAATATGCTACGCCTTTGTCACGATCGCAAACATCCATTGC 1604110 35 100.0 42 ................................... CTGTGAAGATTGCCACAGCAATGATAGCCATGGCAAAATAAA 1604187 35 100.0 39 ................................... TTATTCACAATTATAGTATACAATCAAAAAAAAATACCT 1604261 35 100.0 37 ................................... TTTTATACAACAAAGCAACAATTTTAATGAAGTAATT 1604333 35 100.0 36 ................................... TCTTTGCTAACAAATTTAGATTCATAGTCTTTGTTA 1604404 35 100.0 36 ................................... ACCTGTGATTTTAAACATACTGATCTCCTTATCTCC 1604475 35 100.0 37 ................................... ATAATATGGTGCCAACATATGAAGAAGCTAATAAGTA 1604547 35 100.0 36 ................................... GTTATGGATTTTTTGTTATCATCATTATTCACAAAC 1604618 35 100.0 43 ................................... TAAACCTTTAACTTAGTTTTGATTTTAATCGGTTTGTTTTTAT 1604696 35 100.0 37 ................................... TTAAAGTGAATATTAAAATTAAGGTAGGAGATATAAA 1604768 35 97.1 39 ..........C........................ AATTCATTTAGCGCTTGTAAAAGATACCCATTTATTAAT 1604842 35 94.3 35 ..........C...G.................... CTTCTAATTCACGGATTTGTCTTCTGACTAACAAA 1604912 35 94.3 36 ..........C...G.................... CTGTTCGAACAATTCGTCAATTTTTTTCATGATAAT 1604983 35 97.1 35 ..........C........................ ACGACAAATATACATTCTTCTCTCTATTCACTGAT 1605053 35 94.3 0 ..........C.......................A | TAG [1605074] ========== ====== ====== ====== =================================== =========================================================== ================== 26 35 99.1 38 GTGTTAATGGTCTTACCCCATTAGGGGACGGAAAC # Left flank : GAAGAAACTGAAGGTAAAGAACAACGTATTTTTAATTGCTCGGGAATCGTGGAAGGGGAGCCGGAAGTTGGATTATTACCTGATTTTGAAGAATGGGAAGAAATACTACGCTTTCAGTCGGGAGTATTCCAGACGGTGTCACACCCTCTGCCAGGGGGCGACGCCCATCAATACGATTTTGAAAATTCGAGAACATAATAAGGCCGTTATGAATCTTAAAAAGTACTTAGAACGGATGATGCCGTTCCTGATAGAGTATTATGGAATCAGCGCATAACCGCTGAGAGGGAAAGCCAGCTCAATGACATTGGGCTGGCTTTTTTACGGCCATCATGATATAATAAAAACAGCTCAAGCGGGAGTGAAATCTGCCCCGCTGAGATGGTTATGCGGGATACAAGAGATTATGAGAATATTCTCACGGCCATTAACCGAAAAAAGACGACTCCCCCGCAAACCGACCTATCAGGCCAGTAACCAAGCGGCTTTCCAAGGAGGCT # Right flank : AGATGAAAGGAGGGGGCAATGATGGGGGATATCGTTGTTGGATGTTGATAAAAAAGGTGGGCTAGGGGAAAGACTCCCCTAGCCCATTAAATTATGTGATAATGACTTCATCTTATTTGGAAGAGCATTTGCGGTGAAGGACTCATGTTTTGATTACGCTCGTGCGTTATCTGGCATTAATTCTGGCCATGCACAGAATTCACGACGGGACGCCTTTTAGGCGTCCCCTACGGTATCGCATATAGGCGATGATAATAATATATGGCCAATGGCCTTGTACGTAGGGGCTGTCCCGATGAGGGCAGCCCGCTGTGAGATTCCATCACAACCCGTTTGAGTATACTGGTAGGTTTTTAAGCGCTACTTTTTTCCTCGGATCTATTGCATAATGATTTTTTTTGTGCCAAAATTTTTTCTCCTATATGGATAACTATAGTGTAAGGAAAGAGATACTAAGTTAAGAGATATAGGAGGAATTGCCATGAAGAAACTGAAGGTAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTAATGGTCTTACCCCATTAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 1625569-1626971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027569.1 Megasphaera elsdenii strain NCIMB702410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 1625569 35 100.0 40 ................................... GATTCCCACTTCTGCCCAAGTAGGAATCCACCACAAAAGA 1625644 35 100.0 33 ................................... AATGCTACACCAATTGCGTTACACATCTGAGTA 1625712 35 100.0 39 ................................... ATGAAGCGTATAAAACTGCAGATCTTAAACTTGGTGCAA 1625786 35 100.0 39 ................................... TGGGTCATTAAAGTAAACCATCGTGGCTAATTGTGGCCC 1625860 35 100.0 38 ................................... AAGTCAAATTGTTGTTTTTATCTATACCAAATACGTTT 1625933 35 100.0 39 ................................... AAAATGTTGTCAAGGCGTTTGGGTTCTAATCCAAATGCC 1626007 35 100.0 35 ................................... GACCAGAGAATTCGTCATCAGGGACTAAATTATAT 1626077 35 100.0 40 ................................... AAGCTTCCGCTTCCGACAGCATGTATCCAAATGCACGTTT 1626152 35 100.0 32 ................................... CAGCCCTGAAAGTCAATGTTTTCAAGCTCCTC 1626219 35 100.0 35 ................................... GGGTGGATAATCCATACGGAAGATGAAGATACAAG 1626289 35 100.0 36 ................................... AAAATGGAAAGGAGGTGAGATATTACCTTCATCTCT 1626360 35 100.0 38 ................................... CCCAATAAGTTAAGAGTTAAGAAATGATTATATATTAT 1626433 35 100.0 40 ................................... TTGAACAGCCATTGCCTATTTACTTCCTTTTCCAGGAAGT 1626508 35 100.0 36 ................................... GCCGAAGAATTTGATTACGGGTCTAAATGAACGGTT 1626579 35 97.1 35 ....................C.............. CAGTAAAGTCGGAAAGCTCTATCTTTAGTTCTAAA 1626649 35 97.1 35 ....................C.............. CAGTAAAGTCGGAAAGCTCTATCTTTAGTTCTAAA 1626719 35 100.0 38 ................................... AAGGAGGTTTTGAAAACGTTGTTAAAGCTCTAGGTTTC 1626792 35 88.6 32 ...........A..A.....AC............. TGCCGGATTCTTGATTTTCACATCATGTTCAT 1626859 35 88.6 43 ...........A..A.....AC............. GCTGAGAATCCACATGTTGTGGATCCGTTTTGTCATAAGTTTT 1626937 35 94.3 0 ..............A...................A | ========== ====== ====== ====== =================================== =========================================== ================== 20 35 98.3 37 GTGTTAATGGCCTTGCCCCATTAGGGGACGGAAAC # Left flank : ATACATATAGTAGAACAAATAAAAAGGAGCCGATATTATGAGCACAAGTAAAAAAATCGCAAAAAACGGAACGAAAACGGTAGTAAAGTATGGGGCTAAAAAAGTAGCTTCCCGGTATTTAGGGAAAGCAGCTATCAGTGTAGCCGGCGTTACGCTGGGGGCACCCATCATTGCTTCGGTAGTCGCTGGATTCGCTGTAGAAGCTGCTTTTGATTTTCTTTTCGATGATTAAGAAGGGAAAATGTTGTTTATGAAACTTAGAAAACAAGCGTATAGGTAATGAAAGGAAAAGGCCAGCTCAACGCCGTTGGGCTGGCCTTTTTACGGCCATCATGATATAATAAAATCAGCTCAAGCGGGAGTGAAATCTGCCCCGCTGAGATGGTTATGCGGGATGCAAGAAATTATGAGAATATTCTCACGGCCATTAACCGAAAAAAGACGACTCCCCCGCAAACCGACCTATCAGGCCAGTAACCAAGCGGCTTCCCAAGGACGCT # Right flank : AGATGAAAGGAGGGGGCAATGATGGGGGATATCGTTGTTGGAGGTTGATAAAACAGGTGGGCTAGGGGAAAGACTCCCCTAGCCCATTAAATTATGTGATAATGACTTCAGCCTATTTGGAAGAGCATTTGCGGTGAAGGACTCATGTTTTGATTACGCTCGTGCGTTATCTGGCATTAATTCTGGCCATGCACAGAATTCACGGCGGGACGCCTTTTAGGCGTCCCCTACGGTATCGCATATAGGCGATGATAATAATATATGGCCAATGGCCTTGTACGTAGGGGCTGTCCCGATGAGGGCAGCCCGCTGTGAGATTCCATCACAACCCGTTTGAGTATACTGGTAGGTTTTTAAGCGCTACTTTTTTCCTCGGATCTATTGCATAATGATTTTTTTTGTGCCAAAATTTTTTCTCCTATATGGATAACTATAGTGTAAGGAAAGAGATACTAAGTTAAGAGATATAGGAGGAATTGCCATGAAGAAACTGAAGGTAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTAATGGCCTTGCCCCATTAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.10,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 1627954-1630010 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027569.1 Megasphaera elsdenii strain NCIMB702410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1627954 35 100.0 34 ................................... TATACCCATAGTCAAAATCGCCATGTGAAAAAGA 1628023 35 100.0 41 ................................... TCGTTTCAGCTTCACTGCTGCTGTCATCAGGAGACTCTATC 1628099 35 100.0 39 ................................... TTTCAGCCGCCCTTTTTGTCTAGCACTGGACGTTAGTCC 1628173 35 100.0 42 ................................... GTCTTTGACTTCAGACGCGGAAACTTCGAAGTGTGCATTGTA 1628250 35 100.0 36 ................................... TTGAGCTGAACCGTTCGTTTAGACCTGTTGTAAAAT 1628321 35 100.0 34 ................................... TCAATTCAATATCTACCCAGCTGTAATTGTAATT 1628390 35 100.0 34 ................................... CAAAGGAGGAGGAATCTATTATGAAAAATTACAA 1628459 35 100.0 34 ................................... TTTTTTTGCCAAGAATGATTGCTTTGAATGTGTT 1628528 35 100.0 40 ................................... TATCGTCAGGAAGCGTGCTGATATCGACGTCACTGGTCTT 1628603 35 100.0 38 ................................... TGGTGCTGTCTTCTGATTTTAACACTCCAAGATCAATT 1628676 35 100.0 34 ................................... ATTAATGCCTTCAGAAGTAGCATCTTCAATCTGT 1628745 35 100.0 37 ................................... TCCTGACGGGACTGCAGTTCTTTCTGCAGCTTTTCAA 1628817 35 100.0 39 ................................... TTCAAAAACGCAAACAAAATATTTTACTACTTCTTCCAT 1628891 35 100.0 42 ................................... GGCTGTCTTCCGAATAGTCATCCTCTAAAGGAAACGTTACAT 1628968 35 100.0 38 ................................... CACTTCTCTCTCCTTTGTAGTAGAAACATTAGAATCCT 1629041 35 100.0 39 ................................... ATGAATCGTTGCTTCTTATCTATCGGGGATTTAATAGAT 1629115 35 100.0 39 ................................... ACCATTTGCGGCCCTTTTTCGGTCCTTTTTTACGAAGGG 1629189 35 100.0 33 ................................... CCTGTACGAACAGGATAGAATTAAAAAAGAAAT 1629257 35 100.0 32 ................................... ATTACTAGGTAAGTCCGGATCTAAGGAGATGT 1629324 35 100.0 39 ................................... TTGTCGGTATCATCATGATGATATTCCTGTTGTACAGGA 1629398 35 100.0 39 ................................... GTCTATGTGGCCATCTCGATCTTGAGAAAGTACTAATTC 1629472 35 100.0 33 ................................... ACCACCGATCAAACTAAATGAATACTTTTCAAA 1629540 35 100.0 35 ................................... TTGTTTTTCCCGCATGATAGACATAATATACTCCT 1629610 35 100.0 37 ................................... ACCTTTAAACCTTCTACTCTGTTTTCAGTTTTGCCAA 1629682 35 100.0 41 ................................... TTGATGGAAATTTCGGATAAATCAATAGCAAAATCTTTCAG 1629758 35 100.0 39 ................................... TCCTTTCTAAGTTGTTTACAAATGTTGAAGATGCTTTTA 1629832 35 94.3 41 ..............A.....T.............. CACCAGGGATAAGCTTGAGCAAGTACCATAGGCGTCTTGAT 1629908 35 94.3 33 ..............A.....T.............. TCCAATAAGTTTTAACATAGAACGTTTTTCACC 1629976 35 97.1 0 ..............................A.... | ========== ====== ====== ====== =================================== ========================================== ================== 29 35 99.5 37 GTGTTAATGGCCTTGCCCCACTAGGGGACGGAAAC # Left flank : GAAGAAACTGAAGGTAAAGAACAACGTATTTTTAATTGCTCGGGAATCGTGGAAGGGGAGCCGGAAGTTGGATTATTACCTGATTTTGAAGAATGGGAAGAAATACTACGCTTTCAGTCGGGAGTATTCCAGACGGTGTCACACCCTCTGCCAGGGGGCGACGCCCATCAATACGATTTTGAAAATTCGAGAACATAATAAGGCCGTTATGAATCTTAAAAAGTACTTAGAACGGATGATGCCGTTCCTGATAGAGTATTATGGAATCAGCGCATAACCGCTAAGAGGAAAAGCCAGCTCAACGCCGTTGGGCTGGCTTTTTTACGGCCATCATGGTATAATAAAAACAGCTCAAACGGGAGTGAAATATGCCCCGCTGAGATGGTTATGCGGGATACAAGAGATTATGAGAATATTCTCACGGCCATTAACCGAAAAAAGACGACTCCCCCGCAAACCGACCTATCAGGCCAGTAACCAAGCGGCTTCCCAAGGATGCT # Right flank : CAACAAGAGAGACGCCTTTGCGGGATATCCCCTGCGGCAGCGTATGCAGGCGGTGAGAGATATGAAAAGGAAAACAAAGATGGAAAGAAAAAACCTATCGTTGATGCGATAGGTTTTTTTGTGTTTATGCCAAAAATGCTATGTTCTGGTGGACGTATAGTATAGGACCCTTGAAAATAGTAAAAAAATAAATGAATTCGAGGTGAAATGCCAAAAACATCAACGGGTCCTGGATACCTATAGTAGAACAAATAAAAAGGAGTAGATATTATGAGCACAAGTAAAAAAATTGCAAAAAACGGAACGAAAACGGTTGTAACGTATGGGGCTAAAAAAGTAGCTTCCCGGTATTTAGGAAAAGCAGCTATCAGTGTAGCCGGCGTTACGCTGGGGGCTCCCATCATTGCTTCGGTAGTCGCTGGATTCGCTGTAGAAGCTGCTTTTGATTTTCTTTTCAATGATTAAGATGGAACCCCGTTATCAAAGAAGTATTAAAATAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTAATGGCCTTGCCCCACTAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.10,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 1642719-1643479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027569.1 Megasphaera elsdenii strain NCIMB702410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 1642719 35 100.0 35 ................................... TTCCTCGTTCTTCTTTTGATTCTACCCGTGAAATT 1642789 35 100.0 41 ................................... ATGGCGATATTCTTTCTCATTATCAATATCCCCAATCCAAT 1642865 35 100.0 40 ................................... TATATTTAGCTCCTTTTTTTGTAACCCATTCTTCGGCAGC 1642940 35 100.0 37 ................................... AAGTAGCATGTTTCACAACGTTCTACTTCTTTTCTTT 1643012 35 100.0 37 ................................... ATTTTCCCGATTGGGTAGTCTCTAAGTTGTCCGACCT 1643084 35 100.0 39 ................................... TCCTGTCAGGTCTCTTGTCTTCATGTATTCCATGTAAGA 1643158 35 100.0 36 ................................... TTGGTCGTAAAAATTTCAAACATCTTCGTTTCTTCA 1643229 35 100.0 33 ................................... AGATATTCTTTATCGTCGATCAGATATCTTTCT 1643297 35 100.0 40 ................................... TTTTATTTGAATTTATAACGTACCCAGTCAGGGACGTCTT 1643372 35 100.0 38 ................................... TGTCGTCCGGGAGCCCTTCGATGTGACCCAGCGTCTGC 1643445 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 11 35 100.0 39 GTGTTAATGGCCTTACCCCAACAGGGGACGGAAAC # Left flank : ACGTATGATACTTGGTGATTTTTTATATCATGCACAACATGGGTGGTACGTATTCCAGTCGGTCTATGAGAATGGCTGGAATAGCGGATCCTGGCTGGTGCAAGGATTATTGATTTTTGTAAGTCTTAGCTTCTTAGGGACGACTGTTGGGGTCCTCTTTCCCCAACAGGTTCAATCTGAGAAACAGCATCTTTGGCGACAGGTTGTTGTTAACGTAATCGTAAATTGTTCTATTATTTTTGGTATGGCTAGCATTTACGGGCTATAAGTGAGAAGAAAAATGATAGGGAAAAGTCAGCTCAAGTCTGTTGGGCTGGCTTTTTTACGGCCATCATGATATAATAAAAACAGCTTAGAAGGAGGCAAATCTGCCCCGCTAAGATGGTTGTGCAGGATACAAGCGATTATGAGAACATTCTCACGGCCATTAACCGAAAAAAGACGACTCCCCCGCAAACCGACTTATCAGGCCAGTAAACAAGCGGCTTCCCAAGGACGCT # Right flank : CAAGGAGGTGACAATAATGGGGGATATTATTGTTTTAGGTTAATGAAAACGGTGGGCTAGGGGAGATTCTCCTGGCCTATTCGTCTTTACAGGACGTCCCCTGCGAAATCGCATATAGGCGATGGAACAAAAAAGAACTGCCGCATGATTTTAAAATTCATGCGGCAGTTCTTTTTTTATGCCAAAATTGGCAATATATATAGGATGTATATATTAGGAGGAGATATGATAATGGAGAAAGATATTTTGATTGATAGCTTGCAAGGGCAGCAAGCTATCCAGTTTATTCATGATTGTTTTAGTAAAATTGGACTTTCATGGGAACAATGTCAGCTTACGAAGGAAGAAATTACGCAATGTTGTGACCATCGTGATGAACAAGGTCATTTATTACTTGAAAAAGAAGATCCTCATGATGGATTTGCTGTCTGCCCGAAATGTAAAACTATGATTGTCATGGACTTTGATGAAAACCAGCTAAGGTATGACTTGAAGGATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTAATGGCCTTACCCCAACAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 6 2001839-2002621 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027569.1 Megasphaera elsdenii strain NCIMB702410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2001839 32 100.0 36 ................................ GTCTGGTGGGCCTTTGACTGGGAACACGACCCGGAA 2001907 32 100.0 36 ................................ AACCAAATGGAAATCTGTACGAACCTGCGCCTGGGA 2001975 32 100.0 37 ................................ ACGATGCCCGTGCGGGGCCGGGACGACATGTGTATGA 2002044 32 100.0 35 ................................ TCGGGAAATACTGGGAAAAGTTGCATTATTTCATC 2002111 32 100.0 39 ................................ AATATTGGCCACGTATTGTTTAAATTCGGTGTATCGAGA 2002182 32 100.0 38 ................................ TGCCATCCGGCTCTAACTGGCCGCATAACACGATGCGA 2002252 32 100.0 37 ................................ AAATTAGCCAATAGCCAAGCCCCCTTTACTGATTGGA 2002321 32 100.0 34 ................................ GGTCGTATCTTGTGACTATCTAAGGGTGCTATTT 2002387 32 100.0 36 ................................ CCATGGCATCCGCTTCATTGCATCCAAACAGCTCAG 2002455 32 100.0 35 ................................ GTCCATAAATAAGCCCCCCTTAAAACTGACTTGAT 2002522 32 100.0 36 ................................ CAGACCAAACGTTGCACAAGTACCACATGTCGGCAG 2002590 32 93.8 0 ..............................CG | ========== ====== ====== ====== ================================ ======================================= ================== 12 32 99.5 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TATTCAGCTTTTGGCCGGTTTCCTTATAATAGTCAATGCGGTCACTCAGCATCTTGTTGTAGATGAATCGGACACACCCAAAGGTCTTGGCAAACATAATTTTCTGTGCCGTTGTCGGATAGATTCTGTATCGGTATGCCTTATTCACTATCATCACCTGCCTTGACTTTCTATATACTTTCACTCTTACTACTGATTATACTGCAAATCAACTTGTGAAGCTATTGTTTTTCTGATGGCATCGAGCCCTCAGAAAAACCTGCAATTCATCTCACCGCCTAAAGAGGCGGGAGACTTCTTGCAGAATCAGGTTAAACGTAGGAAAGAGGGGGTGCGAAGCCGTATCACACATAAAATATATCAGAGCTTCGCACCCGGCTTGATTTCTATAAAAATAAGCAATACCCGGAGAATTGACTCAAAAATTGAACTGCTATTCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGAAGGCTGA # Right flank : GCTTATCCTGTTTATCATCGGAACGGCCTTTTTATCGTAGTTTCTCCAGAAGACTCCTTCCTCTTAGGTAGGGGATGAATGGCGATGGATTTCGCAGGTTCGATGCCTGCGAAATCCACCCTATGTCTTTTCCATCTTAGCCTTTTCACTTCGTCTACGGTATAATGGTAGATAACAGAGGAGGTGAATCCTAGATGTACTTGACGCAATCAAATGTCATCCGCGGCTTGTCGAAACAAGACTATACGATGCTCCGGGAAATGTGCCAATGCAGCAATAACCTGTACAATGTAGCGGTCTATACGATTCGGCAGCATTACTTCGATACCCAGCAATTCTTGCGGTACGAAAAAAATTACCCCATCTGCAAGAAAAATGAAAACTATGGCTTGTTGCAGGCCGGTGTCGCCCAGCAGATATTGAAGATGGCCGACCGCAGTTTTCGTTCTTTTTTCGGGCTTTTGCAGAAAGTCAGGTCAGGTGACTATGGTTCAAAGGAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 2453636-2452257 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027569.1 Megasphaera elsdenii strain NCIMB702410 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2453635 32 100.0 35 ................................ TTTCACGCCACGGTCCACGGTTTTTAATGCATGGA 2453568 32 100.0 37 ................................ GAGATATTATCCGCGGCGATGAGCCGTTTGAAATCAC 2453499 32 100.0 36 ................................ CGGATTGTTTGGTCATCATCGGGCTGGTCACAGCGC 2453431 32 100.0 34 ................................ ACAAGGAAAACCAGCGCAAAGGAAAAGCACTGAG 2453365 32 100.0 35 ................................ TATGGCGACCCGGAAGCCAAACGGAAGGCTGATAG 2453298 32 100.0 35 ................................ ACGAAATGGGCAGGCAGAAGATGGAGCGTATATCT 2453231 32 100.0 35 ................................ TTTGCATTACCCCCTTTAATCAAGATCATTGCCAA 2453164 32 100.0 36 ................................ CCGTTTATCTAGGTCTTGCGAACCGAAAATTTCCCG 2453096 32 100.0 37 ................................ CAGCTGGTGATAGCCAGATTTTGGATTAAAACCGCAC 2453027 32 100.0 35 ................................ AAGAACAATATCGACCGGTCACAGCATTTCATGAC 2452960 32 100.0 35 ................................ TGTACCGCTGTATCTACCTGTTCCGGCGTCACTAT 2452893 32 100.0 36 ................................ CTCGACGGGGACAAGACGAACTGCTCTCTCGACAAT 2452825 32 96.9 36 ...................T............ CTCGACGGGGACAAGACGAACTGCTCTCTCGACAAT 2452757 32 96.9 35 ...................T............ CTTGTAATACGGCGTCAGCGTCCCATTTTCGACAT 2452690 32 96.9 34 ...................T............ TTTAGTCATGAGGAACTCATTGGCTTTCTGAAAG 2452624 32 96.9 34 .C.............................. GAGCATATCGCCAATCTGTGCCGGTTGTGTCAGC 2452558 32 100.0 36 ................................ CGAGGCTCGCCGGATTTCGGCGATGGTGGGCAAAAA 2452490 32 100.0 36 ................................ TATAATGCCGTCCATACGGTATACATGGAACTGCCC 2452422 32 100.0 34 ................................ AAACCAGTCTAAAGCATTTTGGGGTAGAATACCC 2452356 32 100.0 36 ................................ GCTTCTGAAAATGGAACGTAGCGAAAAAATCCGCAA 2452288 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 21 32 99.4 35 GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Left flank : GTTCACACGACAACTAAGTCGCGTCGATACTGGATTTTATGGTATAATATAATTGTCGTTTTTGTGGATTCCACAGGGACGTGGATTGAAATTGTAATGTTGAATAGTAAGTGAGGTGGAAACCTGCCGTATGCTAACCCTGCGGCAGGTTTTTTCTATAGCTATAAAATTACTAATCAACATTACAGAATAATATATTGATTTTCTATGGTGAAAGAGGTATACTAACCATATAAAATAGATTACCGAATTAAGACAGGGCATCTTGGCTATCCGTATATGTAACCCGGTCATACCGAACTCTGTCAAGACTGATTTATAGAGAGAAAGTGGTGCGAAGCGGCATCACACATAAAATATATCGGGGTTCCGCGCAGGCCTTACTTTCTATAAAATTAAGCAATATCCAGATAATTAACTCAAAAAATTAGATTGGCTTTCTCTCAGTTCGCAATATAGATGATAGAAAAGCAGGCGATGACTGAGTTAATTTGAAGACT # Right flank : CACATGGAGGCTCCGCCTTGTACGGATACTTACAAGTCTCACCTTTTATGGGAAAAAAGAATGTTAACTTACTTTAGATTATTCGGGCAAAATTACTGCGGAAGAGAATCTTCAATGGTGAGAATCCGTATTGGGATGGGGAAATGTTTTTATGGATCAGCAGTCGAATTTTACAATATAATGAGGGGGTGTTTGTTATGGAATACGATGAAGATGATTTTTTGATGATTTCAGGGATACAACATTTTTCATTTTGTCCTCGACAATGGGCCTTGATTCACATCGACCAGGTTTGGGATGAAAACATGAAGACGATGGAAGGCAATATTATCCATGAAAATTGCCATAATCCAGATTTTATAGAGAAGCGTGGTGAAATTCTTATTTCTCGCGGGATTCGGATTGCTTCAAGGACTTTAGGTGTAACTGGACAATGTGATGTAGTGGAATTTCACCGGGATGATGATGGTGGAGGTCGTTTATATGGACATAATGGCTTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //