Array 1 604747-605177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJZ010000001.1 Campylobacter coli strain 18QD2YX31C 1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 604747 36 88.9 30 T............G..........GT.......... CTTTTGTATAAACAAGTTCTATGATGTAGT 604813 36 100.0 30 .................................... AATAATTTTAACTGCAGTTATAAGAAGTGA 604879 36 100.0 30 .................................... TATTTTTATAATAATTAATTTATTGGCAAT 604945 36 86.1 30 .......T..C..G..........GT.......... AAACAAGCTATAAAGCAAAAATTAGGTGTT 605011 36 100.0 30 .................................... AAGAATTGCTCTGATGAATATAAATTAAGA 605077 36 100.0 29 .................................... TATTAATTTAATATATATTTTGAGTATGC 605142 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 30 GTTTTAGCCTATTATTAATTGTTTACATGGTAAAAT # Left flank : TGGTGAAATGCAAACAAAGCGATGAAGTTTTTCAGGTGTTTTATAAAAAAGATGGGAAAATAAGATTGCTTAGAGTTAGCAATGTGCAAGCTTTAAATCATTTTGATAAACTTAAGGGTGTAATGACAAAAATAATTTTAGATAGTGGTTTCAAGCCTGATGAACAATGATGTCCAAATTTCACAAATTACTAATATCCCTTATTTCACTATTAGAGACTGGAAACAAAAAAAAGACAATTGGAGGGGAAAAATATATCTTTTTTTAAAAAACACTAATCAAGAAGAATTAAAAGAAATATTTTCAAATTCTATTAATTCTTCTAATACAGGTTTAAGTGATTCTAAAATTGCCAAAATTACAACAATTCCATTGCCAACGCTAAATACTTGGAAAAAGGATAAATCAACTTATAGAAAGAAAATCTATGATTTTTTGAAAAGTTGCGATGAAAGTAGATTAAGAAATATTTTCTTATGAATTTAAATATTTAAAAGCTA # Right flank : TAGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTCTTATTTTTTGAGCAAAAATATCTAAAACCATTTACGCTCTTCGTTTTCAATTAAGCTTAATTCACCTGAAGGACTTATACTGTATTTTTTAATTTCAAGTATTTTTCCTACCACTATAGATTCTTTATCATTTTTTCTAAAAACAACCATTTCATCTTCACTAAGGTTGTGATAATTGTTGTCGTGTTTTTTATAGGTTATTTTACTTCCTGAAGTATTAAAACCATGATAATAACAAATAATAGACTCTTTCATACCCTTTATTTTTACGCTAATTGGAGTATTTTTATACAATGACATACAAAAGTTATAATTTTCATTCATTTCAATGCCTTCTTTGGTTTCTCCATTTGATGTAGTTGCAGGGGTTTTATTTGGAAGTTTTTTTGTAGAAAAATCTGCTTTATAAATAGACACTGCATGGAATTTATTTTCTTTATCTACAAATAAATCAGTTCTTA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTATTAATTGTTTACATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1635454-1636215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJZ010000001.1 Campylobacter coli strain 18QD2YX31C 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1635454 36 100.0 30 .................................... TAGTAGCTAAGAATAAAATAAGAAACACTG 1635520 36 100.0 30 .................................... GAACTAACGCTGTTATATCAAATCTAGTTG 1635586 36 100.0 30 .................................... AGTTTATCAGATATATTTTTAAGGTTTAGA 1635652 36 100.0 30 .................................... GAAAGCAAAATCACAATAGCTACATTTAGC 1635718 36 100.0 30 .................................... AAATCAGAACCACACTGTTTATCATCTTTT 1635784 36 100.0 30 .................................... TAACATTTTTTCTTAATGTAGGCAATATAT 1635850 36 100.0 30 .................................... AATTGTGATAATATATTAGAAGTCCCATAT 1635916 36 100.0 30 .................................... AAATAGAATTAATTCCAAACAATAAAGCAA 1635982 36 100.0 30 .................................... TGTTTTTATTATAGGAGATACAGGTGCAGG 1636048 36 100.0 30 .................................... GATACAGGATTAATTGGAAAACCTGTGCCA 1636114 36 100.0 30 .................................... AAGGAAATTATAAAAGATGTAATAGCAAAA 1636180 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : AGCCGACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTAGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGTAAGAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTACCAAAAGAATGTGAAATTTTAGAAAATAAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTGGAGTAATTAGCCCTAGCAGAGTTTCAATCCACTAGG # Right flank : TAGATATTTACCAGATAATGAAAATTTAGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACACTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTATTTCTAAATTTACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //