Array 1 26696-25479 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRV01000037.1 Staphylococcus delphini strain NCTC 12225 fd3cc9e6-4033-41ed-aa50-378f060d9ff7_c38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26695 36 100.0 29 .................................... CGTATGGCAGAAGAGATGGAAGGCGGTAT 26630 36 100.0 29 .................................... CCAAATTTGCCCCCTGAAATTGAGGTTAC 26565 36 100.0 30 .................................... TTCATGTGTTAGATTTTGTGGTTGAGGGCA 26499 36 100.0 29 .................................... ACGTTTATTATCTGAACGCCGTTTTTGCT 26434 36 100.0 29 .................................... TGCCATTTTGTCTGTCGCGCATAACCGCA 26369 36 100.0 30 .................................... ACCTTGGAAGTATCAACTTTAAGAACACCA 26303 36 100.0 30 .................................... AATATACAGATGAAAAGTATAATGAAGCGA 26237 36 100.0 30 .................................... CATGACTGTACTAGAAATGAAAGAGTTTTT 26171 36 100.0 29 .................................... GCAGTTGGAGCTTTAATGATTGCTGAGCC 26106 36 100.0 30 .................................... TGTTTTTCTATACTCAGCATTGAGCACAGT 26040 36 100.0 29 .................................... TTATTTTTGGAGATAATCCATTAATGCGC 25975 36 100.0 30 .................................... TGCAAAATGGTTACAAGGTTTGATGTGGGG 25909 36 100.0 30 .................................... GAAAAGTTGGCAAACGACTTAATAAAATCA 25843 36 100.0 30 .................................... TAACGCTTTGAAATATAAGAGAAACACAAA 25777 36 100.0 30 .................................... ATATCATACTGCTTAGCTTCTCACGCGTGC 25711 36 100.0 29 .................................... CCTAACATCAAACACATTACCTTTAACAA 25646 36 100.0 29 .................................... CATTAAGATGGATAATATTCTTTCTATTC 25581 36 94.4 30 AG.................................. AAGTAAGTTCGAATTCGCAACGAGTAATGC 25515 36 86.1 0 .......................TG..T.TA..... | C [25483] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : ATTATTTCCGGAGTCTCACTTGGGTATTCGCGATATTAAAGTATTTATGCAACTATTAAAGAAGTATCATTTCACAACAATTGTTTTCACCAATCATCCTTCTATCATCATTAATGAAGAAAACATATTTCTTTGTAAAATTAATAAAGAGTGTCATGACATTGAAAAAATAAAAGAAGAACTATCGTTATTTATTCCAGAAGAGATGGTGAGACATCAATTGACTAACATGATTGCTTATCACGAGTTTTTAGGTGAAAATCTTTCTGAGTTTGAACGTTATTTTAAGTTTATAAATCATTACAATTAAGTTATACTAAACACAATATAAATGGTTCGAGGATTGAAATACAAAACGATCAATGAGTAAGTTATAGCTATGTGACTTACTTCGTGATTAAGTTGAATTCCTATATCATTTGAGCATAATGATTTGCTTCTTTTATGTGTGCTAAGCCTCAATTTGATACAGAATCGAGTTGAGATTTTTGGAATTTGAG # Right flank : CTATTAAAAATCAAATATGAACTACATTTACGTCTCTCACTATGCTTTTACCTCAAATTAAAGTTATAGTGGGGGCTTTTTTTATTTTTTTGAAATTACCCCCCACCGCTTCCTATTCCTCCTCCATGTTATAATAACTACAAATGCTCATAAAAACAGAAAGAAAGTAGGGGAAATGTATGGAAGCAATTATTGCACGACAACCGTTCCAATTAGGTGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGGTACCAACACCCGGGGCACATGATATTTTAGTCAAGGTCCATGTGACTGGGGTGAATCCGGTTGATACGAAAATGCGTCAAGCGCCATTAAATGTTGATGCGCGTGTACTTGGCTTTGATGCGGCAGGTGTCGTTGAAGCAGTCGGTGATGCGGTTACGGATTTTAAAGCGGGTGACCGTGTGTACTATTCAGGTTCGAACCAACGAGATGGCTCCAATCAGACGTATCAGCTCGTGAATGAAAATTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 15924-17484 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRV01000007.1 Staphylococcus delphini strain NCTC 12225 fd3cc9e6-4033-41ed-aa50-378f060d9ff7_c7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 15924 36 100.0 37 .................................... CTTCTTCACTTTCTAAAGATGTAATTCTGACATTATC 15997 36 100.0 35 .................................... TGTGCATTGTTTAAATCAGTTATTTCTTGTACTCC 16068 36 100.0 39 .................................... TATTTTGTTCCTGCAAAAAGTGTTTCAAATAATAGCTCA 16143 36 100.0 38 .................................... GCTTCATTCTCGAATTAATACGTTGCCAGTTCATGTTT 16217 36 100.0 36 .................................... CTCTAATGTGGTCAAATAAGATTAATACTTTCATTT 16289 36 100.0 36 .................................... CACATCTTCTAATTTATTTGATTTTGCATTTCCAAT 16361 36 100.0 37 .................................... ACCATAATGTTTTGATTACCGTTCGCAATCGAATTGT 16434 36 100.0 37 .................................... ATTTTTATCTAGTGGTTATAAGTTGGTATTAGGTAAG 16507 36 100.0 36 .................................... TATCAATTCCTTTTCATTTGTTTTATTTGTTATCTT 16579 36 100.0 35 .................................... CCTGTTTCGTTCGCAATAATTTTGAGGTCACGACT 16650 36 100.0 36 .................................... TCATCAAAGTAATTAGCTAGCTCGGTGATAACTTCC 16722 36 100.0 37 .................................... ATCATTTTCATCAATTCCTTTTCTTTATTATAGTTTA 16795 36 100.0 37 .................................... ACGCAATTCGTCCATCACTTCTTCCGCCTGTGATTTT 16868 36 100.0 37 .................................... AATATTTAAATCCATGAAATGTACTACATAACGTGGG 16941 36 100.0 37 .................................... CTCGGTACTTTTTCAACCTAAAATGAATGCTGACGTT 17014 36 97.2 36 ............G....................... GATAATCCCGTTTTAATTTATCCTCGATATAATCGG A [17024] 17087 36 94.4 36 ............G........A.............. TGAAAACCTTTTATAACATCTGTCATTTCTTCCAAA A [17097] 17160 36 97.2 35 .....................A.............. ATTTATTACCGTCAATTTCTATTGCATATTTTTCT 17231 36 94.4 35 ..............T......A.............. GAGTGGCTTGATGAATTAGATGCATACCATTTTCA 17302 36 91.7 37 ............G.........A.........A... TTTTTCTTAATCTTCATCATCGTTCCTCCTTGTTTTT 17375 36 94.4 37 ......................A.........A... TTTCAGCATCATGAGAATATTCTTTTTCACTCGAATC 17448 36 69.4 0 .....T..T..A....G..T..A.....G.TTAT.. | T [17469] ========== ====== ====== ====== ==================================== ======================================= ================== 22 36 97.2 37 AATCGAATAGATACCCCGACATTAGGGGACGAGAAC # Left flank : ATATGAATGAAGTCGGATGTGTCGCGTACAGTAAAAAGATGGGAGTATGGTAGCTTTGGCAATTGAATAGGCTGCGGAAATATGTTAACTGTAAAAATACATTGCACATTCCGATGAGCTTTTTGAGTACGAAGAAGTTAAGAATAAAAAAATTGAAGTGTGCACAGCTACAGCATATTCGACCAGAAGTTAAAGATTAAAGAGAAGGTGGCAGTATACAAAGGAAAAGTGGGAAATATACGATAATTACCATGAACAAGAATTGGCTTAAATGAAAACGTTCAAAAAGTGTAGAAGAGGATAATCTTGTGGATACGGTATGAATTGGGAAAAATTTATTGTATAATATCGATGATGTGTTTTGAAAATTTTTTAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATTAGGATATTTTTAATGTTAAAGTTGTCTTAATTTCAGACGCGGTTAAATGATAGATATTCACGCTATTAAGGGATTTCTATAGCTGACT # Right flank : CCATTTATAGTATTTATAAAGTGCTTTTAAGGAGAGGTTACGATATATGGAGCGTTGAAAAATGACATAACAACATAGAAAGATGAATGCAACGTTTTAAAAATTACAAATAATTCACAATTCTATTGTTGGAAACAAAGAAATGTTGTAAAATTTAATTAACATTTTAAGCGATAAAATGGAGTCTTATACATCTTGATGAATTTTTGTATTTATTGCATATTTTTTAGTCATAGCCATTTAAAGTATATGCATTAGTGGTTTTGATTGGAATTTTGAAGAAATAATAAGCAGATTAAAGGTGTTGAGATTGGATATACTACTATATTGATATAATGACTCACTGAATCGTATTCTTGCTTTTATCTAGGGGGTGTAAAGATGAAGGATATCATTTATGTTGAGAATCATCATTTTGTCAGTGTAAAAGGGGAAAGTATCAAGTTTAAAAATATTATAGATAAAACAGAGCGATATTTTTTATTAGATGATGTCGAAGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGATACCCCGACATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //