Array 1 8724-9424 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNXF01000053.1 Escherichia coli strain MOD1-EC6306 MOD1-EC6306_53_length_28502_cov_25.9344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8724 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 8785 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 8846 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 8907 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 8968 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 9029 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 9090 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 9152 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 9213 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 9274 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 9335 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 9396 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2664-4034 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNXF01000084.1 Escherichia coli strain MOD1-EC6306 MOD1-EC6306_84_length_10798_cov_23.2243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2664 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 2725 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 2786 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 2847 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 2908 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 2969 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 3030 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 3091 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 3152 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 3213 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 3274 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 3335 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 3396 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 3457 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 3518 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 3579 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 3640 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 3701 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 3762 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 3823 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 3884 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 3945 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 4006 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //