Array 1 71028-69804 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEA01000008.1 Neisseria meningitidis strain M39205 M39205_S9_cleaned_ctg_7661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 71027 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 70961 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 70895 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 70829 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 70763 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 70697 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 70631 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 70565 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 70499 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 70433 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 70367 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 70301 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 70235 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 70169 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 70103 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 70037 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 69971 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 69905 36 100.0 30 .................................... TACACGCCCAAATCTTTGAACACGACAGCC 69839 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //