Array 1 512-2979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXXN010000010.1 Nostoc sp. MG11 NODE_10_length_223517_cov_8.261552, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 512 37 97.3 35 .C................................... AATATATTCACAAGTACCGCGCCTTGTCAGATTGC 584 37 100.0 38 ..................................... TTGCTTTCCAACAATAATTGTGGCGTTATCGTGCTTGC 659 37 100.0 34 ..................................... TGAACATATTCGCTTACATCTGGCATTGGAATTC 730 37 100.0 35 ..................................... TTGAAGTTGAGCGGCTATTTCAGCAAGCCCATTCT 802 37 100.0 32 ..................................... CTTATTTCTTCTTGGGAGACTTGAGGAACAAG 871 37 100.0 34 ..................................... TTTATTTCCCCCCCTGCTGTCATCTTTTTAGAAA 942 37 100.0 35 ..................................... ATGCCAAAATCCATAGTGGTTTCAATCAAATTTAC 1014 37 100.0 35 ..................................... CTGGCTATTGCGGCATCTCCAAGATGATGAGCGCA 1086 37 100.0 34 ..................................... ATGTCCACTTCCAACCAGCAGAGCGATGGGCTTT 1157 37 100.0 34 ..................................... CTTGTATGGAAAAATCAAACTGATGAGGAGTTTC 1228 37 100.0 35 ..................................... CGAAGTTAAATCTATAGTTGAGCAAGCGTCTGATC 1300 37 100.0 38 ..................................... CCTAAAATCGTACTACAAACTCGATTTCTCCTAAAACG 1375 37 100.0 33 ..................................... CAAGATGCTGTCGTAGCTGCGGGTGGCACGATC 1445 37 100.0 37 ..................................... ATTACAAAACCCGTGCTGATGTAGCGGCATTATTCGA 1519 37 100.0 34 ..................................... AGGTCTTGTTAAGTCAATTATTGGCATTGAAAAC 1590 37 100.0 35 ..................................... TCTATTGCGGCGATCGCCTGGGGGTCTTTGAGTTC 1662 37 100.0 35 ..................................... TAACATTCTGCGTTTAATGCCGTCGTGAACACCAT 1734 37 100.0 35 ..................................... CTTAGAGTACAGTAAGCAAGCTGAAGAACGCGAAC 1806 37 100.0 34 ..................................... CTGTGGCAGAGAATCAAAAGCCTAATTTCATAGT 1877 37 100.0 32 ..................................... CTGGAATTATTTGGACTCCAAATGATCCGTTA 1946 37 100.0 32 ..................................... CTTTGTTACCTACTCAAATTGATAATTTATGT 2015 37 100.0 33 ..................................... GTCACTGCCCCCTGTCTTTAGCTTCTCGTACTC 2085 37 100.0 33 ..................................... CAAAATCTTTAATTATTAGTGACTCATCAAAAG 2155 37 100.0 36 ..................................... TTCTGCTCCAAATTTGGCAAAGAGAAAGTCCGTTGG 2228 37 100.0 35 ..................................... TCAGCAAGAATTTTACGGCTTTTGGAACTTCTCAG 2300 37 100.0 32 ..................................... GGTGCAGATCCCAGGTAGACCCGGTAGAGATG 2369 37 100.0 34 ..................................... GTGGACTAATGATATTGATTGGGATAGCGTCAGT 2440 37 100.0 36 ..................................... TTATCCCCGCGACCCCAGAGAGGGTGTTAGCGTTGC 2513 37 100.0 34 ..................................... ATTAGATTATCTTTTGATATGCCTTTCATATCAA 2584 37 100.0 37 ..................................... GCAATCACTTTCTGGAATGACACAACTTCCACTGTGC 2658 37 100.0 35 ..................................... AATTGAAGATTGGTTAGACAAAAACGGCTTTTGAG 2730 37 100.0 34 ..................................... ATATCAGTTTTACCGGGCACTAAAAAAGTTACAG 2801 37 100.0 35 ..................................... GCCCACAAATAATTGGCTCATCATACTTAACCATT 2873 37 100.0 33 ..................................... TACTAGAAAATTTCAAAAGAAGAACTTTCAAAA 2943 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 35 37 99.9 35 GTTTCAATCCCTAATAGGGATTATGAGTAATTGAAAT # Left flank : TTTTTTGCACAAGCACTGCTGGCTAATTCTAATAATTATCTGTCTCGCCCATCTCTGCTTCCTAAATATTAGACCTGAATCCTTACCAAAGAAATCACCAAATAATACAAATTATAGTCTTTTTGAAATGCATGTCCGATTATTTAGGAAAAATTATAATGTTGATATAGATTGTTTATATTTAATATAATTACATAGTATACATTTTGTATTTCGTTGTGTTAAATGTTTTGCGATCGCACTCAATTAAATAACGCACGCGTATAAATTATCAAACTAAAAACGCTTGTACTTACGTATTATATAGTGGCGTCATGCGATCGCAGTTTGAAAAAATAAATAAATTCGAGTTTTGCCAAGCTACATATCGATATCCAAGCGTTGCTGATTAAGAGTATGAATTTTGTTTCATGCAAAGGCGCAAAGATAAGAGTTTTAAAGAAGGAATTTTGAGTAATTGAAATTCTAGGTTATCTGAGAATGGGAATCCATTCCCACTC # Right flank : TCCCGGACGTCTGAAAGCCTCGTCTTATTTGGTTTTCAAGGTTCTGTTGCGCGGACTTAGAAATAATAACATGAGGAATTGTAATTTGGCTAGATGCAAATCGCTGAAAACTAGTCCAGGTAAGGTGCGCGGATGGCTTAGAAATTTTATTCCCCTCAAATTCTTGTATAGACGGCAATTCAGCCATTTTTATAGTTACCCTTTAACTAACACCTACCCATCCGCGCACTTGGTACAGAAACTAGTCGGATTGTAAAGCTGATCACTATCAATATTTTGCACTTTGCCAAGAGAAATTTATACTATCGAGATCATACTCAATTAGTTCAGATAGCTAAGAATGCGATGCCTACGGTGGTAAACTAAGCACTTCCGATTCCCCCCAAGCGTCGGATGTTATTTGATAGAGTCTTCAAAGTCTGTCATAGCACAAGCAAACTCCCTAAAAGCAGTTTTAATCAGAACCTCTTTCGTTCCCCTTTCAAGTCGAGAATTGCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTATGAGTAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 35734-32630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXXN010000022.1 Nostoc sp. MG11 NODE_22_length_102050_cov_8.522290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 35733 36 100.0 38 .................................... GAAACGTAATTCACTTTGATTTACCACGTAATCTGGAA 35659 36 100.0 37 .................................... GTTATAAGGCGGTTCATTCCTAGTGCTTTGTTAACAC 35586 36 100.0 30 .................................... TTCGACTACCATCTTGAAAGGTCTTCCGGT 35520 36 100.0 40 .................................... ATTTTCCAAAACACTTGGATCATTTGCAACGGAATATGTA 35444 36 100.0 37 .................................... ATTTTATAATAGTCTTTGATTGCGTTGCCATCACTGT 35371 36 100.0 36 .................................... AATGTATGTCGAGTAAGTGGAGCAAAACTCCTGTCC 35299 36 100.0 32 .................................... GTCTGTTACATCAATAGTCAATATTTCCTCGG 35231 36 100.0 36 .................................... CTGTGTAGCACTTAAATCAGCATCAAGCAATCTAAG 35159 36 100.0 37 .................................... TTTACGAAGAAACTTCATTTCAGGTATCTGGTTTTGA 35086 36 100.0 37 .................................... TTCAAATGTGTTTAACGAGAAAATTTCAGGAAAAACA 35013 36 100.0 38 .................................... CACTGAGGTGTAATCTGATCTTCAGAAACACCAAGTTG 34939 36 100.0 38 .................................... GATCTTCAGAAACACCAAGTTGGGCAGCGAGAGTTTGG 34865 36 100.0 35 .................................... ATTGCAGACAACTCATTAAGGTCTTCATCTTTAAG 34794 36 100.0 37 .................................... ATTGTATAGAGTTAGCATTACGTAGTTTTCAGAACGT 34721 36 100.0 34 .................................... TAAAAGATACTGCTGATAATCAACTAATTCTCTG 34651 36 100.0 33 .................................... CAAAATAATTTGAAGTTAACAGAGGTTTCCTTA 34582 36 100.0 35 .................................... ATTTTTAATGTTAGATTTACCTAAATCTAATTGCG 34511 36 100.0 35 .................................... AGTGGAACCAAAGAAAACGGAGAAAGCCAAAACAA 34440 36 100.0 39 .................................... TTTTACCGTCGAGATTGACGAATAAACGAATTACAGCTG 34365 36 100.0 35 .................................... AGTGGAACCAAAGAAAACGGAGAAAGCCAAAACAA 34294 36 100.0 35 .................................... TTGTAGAGGAGAAAGTAATATCATTCCCATTACAA 34223 36 100.0 32 .................................... GCAACATAATAGCCTCATCTTGAAGGCGTAAA 34155 36 100.0 40 .................................... GTGTGTAAGATCTTAGCGCAGCAGACGAAAAAAACTGCTA 34079 36 100.0 32 .................................... CATTTCCTGCACTGATTGCCCCGCATGTGCAA 34011 36 100.0 38 .................................... TTAGCTGCATCACCAGGAGTTTGATTTACCATCTTTTT 33937 36 100.0 33 .................................... ACCGTTGGCTTCCAGCTTTCGGAAAGCCATTTC 33868 36 100.0 33 .................................... CGTAACAGTTTTGTGTTCTGTGTCCTTTATGTA 33799 36 100.0 35 .................................... AAGTATTGGGTTGATTATGTTCGATTGTACACATG 33728 36 100.0 33 .................................... ACTGAATATAAAGACAGCATTATAGCTGTTTAG 33659 36 100.0 36 .................................... ATTAGCTCCAGTTGTTTGTGCAAAAACCGCAGAAAC 33587 36 100.0 37 .................................... CACTGATCCTATAATATCGCCGTTAATGTTTTTTACC 33514 36 100.0 37 .................................... AGTAAAGTATGAACACCCTCTAATGCTACGTATTGAC 33441 36 100.0 32 .................................... CATTAGAAATACCGGTATTACCTCCTGTTGAA 33373 36 100.0 35 .................................... CATAATATAAGCAACTACACCAGCAACACCGACAA 33302 36 100.0 34 .................................... GTTAGGAAAACTTCACAACCAACTTGAACATCAA 33232 36 100.0 30 .................................... TCCAGCTCTATAGCATGAGGACTTTGTTGA 33166 36 100.0 35 .................................... CACAGGCAGCACCAGCAGCAGCAGCAGCAGGATCA 33095 36 100.0 39 .................................... TGTTGTTCCCACACTTCCTTTTGATAGTTATTAACAAAA 33020 36 100.0 34 .................................... CAGTGGCAATCACCAATTTATCGGCAAAAAATGA 32950 36 100.0 35 .................................... CCGAACATTAATACCATGATCATGAAGCTTATTGA 32879 36 100.0 37 .................................... CTGAAAAGAGTACATCATTTTCTTCGGTCATGACAAA 32806 36 100.0 34 .................................... CAAAAGATGCCCAAGAAGCAAGCAACGCGGCTGT 32736 36 100.0 35 .................................... TTTAGAACGTAAGTCAATAGATCAACAGGATTTGA 32665 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== ======================================== ================== 44 36 99.9 35 CCCCACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : GCTAAAAATGTTAGTGCTTGTTGTGTATGATATTCCTGATGATAAAAGGCGCACTAAGTTATCCAACTTTCTAGAAGGTTACGGGCGAAGAGTACAGTTTTCTGTGTTTGAATGTTTTTTAAGTTTAGAGGAAATGCGGCAGCTTTTTGAGAAATCGAAAAAACTTGTGAAACCATCTGAGGATAATGTGCGATTTTATTGGATTTCGGAGGAAGCTGTTTCCAGAGTGCTAACTATTGGTAGTGAAGAACCAGCAGCACCACCAAAGTATTATGTTATCTAGCTTTAAGGCAATTAAAGAGGTTTTGTAACATGGTCATCGACACCACTCAGAGAATCGCCAAAAGCCTACATTTTAGGTTGAGTGGTGTCGATTGCTTACAGGGCAAGGGTTTGAGGGATGTATTTTCTTCGATTTTGCTTTTCGTATACAATGTTTTTCAGAGTGGTGTTGATTTGGCGGCTGAAACCCTTGCTGGGTAAAAGCTCATAGACGAACT # Right flank : AGTTAGAAACTCAAATATCTCTTGCATAAAATAAGATCCCCGACTTCTTGAAAAAGTCGGGGATCTGAATCTTTGAGAAAGTTGATAAACTTTAGCTATCACCAGTATGGTCAGAATCTTCTTGTTCTTCCTTGAAATCAGATTTTGCTGAATTGTAAATGTCCCTGATAAAATCCTTATCTTTTGTAACTTGCTTTGTTGCCACTTTTAAATTCTCTTCATTAATGGGTGCATTTGAGGAAACAAGAAACGTAATTGCTTTCAAGTAAGTCCAACCCATTACAGTCGAAATAGCATAGAAAGTAGCACCTGTGACTACCATTCCTCCAGCTGTTCCCAAAACTGGAAACATTTTTAAAATAGAACCTCCAACTGATCCCAATATCATTCCTGGAATAACTGATAACACATTTGTTCCTATTGCCGATGCAACTGATTTTAAAATATTCTTGCTGAGTGAAATACCAAGTGCGCTATTTATTCGGGCATACATTGTCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 33613-32631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXXN010000033.1 Nostoc sp. MG11 NODE_33_length_61141_cov_8.454819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 33612 37 100.0 36 ..................................... AAGCAACACGCCAGCTACGAGAAGCAATAAAAGACT 33539 37 100.0 35 ..................................... GTCTACTTTAACTTCATCGGCGATCTGAAACTCGA 33467 37 100.0 34 ..................................... ACCTGCTGGTAAATCAATTGGTATAGATAGAGTA 33396 37 100.0 34 ..................................... GGTTTAGCTGTTGTGCTTGTTGCTCTCTTGCTTG 33325 37 100.0 34 ..................................... GCCTCATCCAAGCAATAGCGCCGCTCGTGATAAA 33254 37 100.0 35 ..................................... GTTGTAATTTTGGGCATCAAAATTATCTGAAACAT 33182 37 97.3 36 ..................T.................. AGAGCCATACGAGCAGGAAGGCGAAGCTAAAGAAAT 33109 37 100.0 35 ..................................... TTGTAACTTGGGTAGGAGGATTACCATTTGATAGA 33037 37 100.0 35 ..................................... AAATGGTTTTTCCTGGCATGTTGGGTTATCCAGAT 32965 37 100.0 34 ..................................... GTGCAAAAACGATAGTAGACAGGGTAACGGGGGA 32894 37 100.0 35 ..................................... ATCATCTACCAACCAAAACAAGGAAAAGTAAAAAA 32822 37 100.0 40 ..................................... CAGGAAGAAAGAAAGGGAGCGGCAGCAAGTACAACGAAGA 32745 37 100.0 42 ..................................... ATGGCATTCGTGACCACATCATTACCAATGTTTCCACTCCAA 32666 36 94.6 0 ....................-...........A.... | ========== ====== ====== ====== ===================================== ========================================== ================== 14 37 99.4 36 GTTCCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Left flank : AATCCCTATTAGGGATTGAAACATTTGTTTGAGAAAATACACCAATCGCAAAATTAGTTCCAATTAATCAAAATCCCTATTAGGGATTGAAACAATATCTGGAATTCCATCATCATCTGTATCTGGAGTTCCAATTAATCAAAATCCCTATTAGGGATTGAAACATTTAAAAATTTCTTTAAATCAAGGATTGCTAAAGTTCCAATTAATCAAAATCCCTATTAGGGATTGAAACCCCTTGCCCTCCCAGGGCAAACGCATCTAAATTACTCTTGATCACAACGAAGGTTAAGAAACAACGAAAAAATCAGGATTTCGCGTTTGATTATTTTTTAAGCCCCAAAGCGATGTCTGCGACGGGCTGCGCCTACGCCTAAATTTTTAGCAATAAGCAAGACTTAATGACATTAGTTTTAACTCTATTGAGAATATACTTTATTTATTGACATGATGCGGCCGCCCTGCTTGTTCTCCCTTCCATACTTCTAATATATAGCACC # Right flank : AATTAACTTAAGGCTCCTATTGGGGTAGGGGCTTTACTTACTTTATCAAATTTTATCCTATGGATATTACTATTATCTACCCAAGCTACTTTCGCATATTTGAATGCAGATCTGGGCGTTGGTTTATCAAAAATCTTGAAACCTTCGTAGCAACCAGCACAATAAATCATGAAGATATTAATACACTTTATGGCGTTACTGAAGGACAAGTAGTAATTGAATTGTTCCGAATTAATGGAGGCAAGTCAGGATATTACCTAGCAAACATTCGGGATAAAAAATACTATTACTGCGTTGACCATGGTGGGGTAAAAAAAAAATTGCTTGAGTTGGGCATTGGTCGAGTAGATCCATTGGAAAACACACATGGCTAAAGTTCCAATTAATCAAAATCCGTATTAGAGATTGAAACAATCTTTGGGGCTAAAATCAGATTTATGGATGCAAGAGTGTAGGATAGGCGCGAAATATAGATGGATACCGTAATTACACCAGAAAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 34346-33878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXXN010000033.1 Nostoc sp. MG11 NODE_33_length_61141_cov_8.454819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 34345 36 84.2 34 T....--.GC..C......................... TTGGATCGAATCTTTCTACGCGCTTTGGCTACCA CG,A [34332,34345] 34272 38 97.4 34 T..................................... AAAAAGATTGGAGAAGATTACTGTTTTCATGATG 34200 38 100.0 34 ...................................... CATCGAATAATCCGGCATCATATCTAACCCCTTT 34128 38 100.0 33 ...................................... ATTTGTTTGAGAAAATACACCAATCGCAAAATT 34057 38 100.0 33 ...................................... AATATCTGGAATTCCATCATCATCTGTATCTGG 33986 38 100.0 33 ...................................... ATTTAAAAATTTCTTTAAATCAAGGATTGCTAA 33915 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ================================== ================== 7 38 97.4 34 AGTTCCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Left flank : GGTAAAAGAGCTTGGTAATACTTTACCTGATACACCCGAACAGGATGAAATACCAGAGATTACCCAAATTGATGAGTTGGAAACATTTATTGGTAAAAAAAAACAAAATTTGGTTGTGGACAGCAGTGAATAAGCACATTCCCGGTGTTATGGCTTGGATTTTGGGGAATCGCAGTTCCGACACTTTTAAGCTTTTGTGGCAGACTGTAAGCTGTTGGCATTCTTATCTTTATGTTACAGATGGTTACCCAGTTTATCCTTGTTTTATTAGCGACGAAGACCATCTTGTTAGTAAAACCTATATGACTAGGGTTGAAGGAGAAAACAGTCATTTTCGTCATTATCTTGCTCGACTACATCGTAAAACTTTCTGTTGCTCCAAGACAGAACAAATGCTGAAATTTTCTATTCGATTGCTAATACATTATCTTAAGTATGGTTCACTGCCAGTCAAGATGTGTACCACTCGTATGGTTGCAGCGCTCGCCTGATTCATATCT # Right flank : CCCTTGCCCTCCCAGGGCAAACGCATCTAAATTACTCTTGATCACAACGAAGGTTAAGAAACAACGAAAAAATCAGGATTTCGCGTTTGATTATTTTTTAAGCCCCAAAGCGATGTCTGCGACGGGCTGCGCCTACGCCTAAATTTTTAGCAATAAGCAAGACTTAATGACATTAGTTTTAACTCTATTGAGAATATACTTTATTTATTGACATGATGCGGCCGCCCTGCTTGTTCTCCCTTCCATACTTCTAATATATAGCACCGTTCCAATTAATCAAAATCCCTATTAGGGATTGAAACAAGCAACACGCCAGCTACGAGAAGCAATAAAAGACTGTTCCAATTAATCAAAATCCCTATTAGGGATTGAAACGTCTACTTTAACTTCATCGGCGATCTGAAACTCGAGTTCCAATTAATCAAAATCCCTATTAGGGATTGAAACACCTGCTGGTAAATCAATTGGTATAGATAGAGTAGTTCCAATTAATCAAAATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 3 36371-35092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXXN010000033.1 Nostoc sp. MG11 NODE_33_length_61141_cov_8.454819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 36370 37 100.0 38 ..................................... ATATTAATAGGAGTTCAATCAAGGAAATCTGATGTTCC 36295 37 100.0 35 ..................................... GCCAGTGGTGTTGCAGTTGGGGCAAACAACCAAAG 36223 37 100.0 33 ..................................... TCTCTCTTTGTATGGGACTTGGCTAAATTTAGA 36153 37 100.0 33 ..................................... CATTAATGGCAGCGATCGTCCCAAATCCTAAAT 36083 37 100.0 33 ..................................... AAGTTTGGAGACCCTTACAGAACAACAGTCTGG 36013 37 100.0 40 ..................................... TCATAAGTAGAACTGATACTGGTCTACACAAAACACACAA 35936 37 100.0 34 ..................................... CGATCATGTGAAATCATCAAACTGTCCAAGCAAA 35865 37 100.0 33 ..................................... TTGTATTCTTAATTCCATATTTTTGCAAAGATA 35795 37 100.0 34 ..................................... AGCTTCACAGACCTGACGAGTCTTACCCCAGATG 35724 37 100.0 40 ..................................... ATGGAACCCTGATAAATGGGAAAAAGCTGTTTCTAGTCAG 35647 37 100.0 38 ..................................... CTCAGTTTAATTCTTCCCCCCTTAGTAGCTTTTCTCTC 35572 37 100.0 37 ..................................... AACCGTACCAAAAACGGGAAAAGTACTTTCATCCCCC 35498 37 100.0 34 ..................................... ACCCACTTTGGTACTGTCACCAGTGACACTTTGG 35427 37 94.6 33 ...................................CT GAATGCAGCATTTTTGACAACACTACTATCTAG 35357 37 100.0 35 ..................................... TTCAAGGTGGCAGCGTGATATTGGCGGATGGCACG 35285 37 100.0 40 ..................................... CTGCAATTAATTCATCCGTCCCAATGGGCTTCTCTGTTGG 35208 37 100.0 40 ..................................... TTACCTGTTCGCTTCCCGACTTTATGTCGTCGTCGCCGCA 35131 36 83.8 0 .....................GG..-..A..A....T | AC,GC [35101,35107] ========== ====== ====== ====== ===================================== ======================================== ================== 18 37 98.8 36 GTTCCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Left flank : ATTCTGTTCTCAAGTCTTATGGTCAGTGGATGCAACTGAGTGTGTTTGAGTGCGATTTGACTTCTACCCAGTATGCTAAACTGCGATCGCGCTTAGCCAAATTGATTAAACCCGACACTGACAGCGTGCGTTTTTACTTTCTTTGTGGCTGTTGTCAGGGGAAAATCGAACGTATTGGCGGAGAACAGCCACGGGACGAAACAATTTTCTTTGCTGAGTCCCCTGCTGGCTAGATTCCTGTATGACAAATGCGCGGAAGGGTAGGTGTACAAATTCCATAGCCTAAAAAAATCCTTCTATCTCAATTCCAGCAAGGATTTCAGCCCACTATTAACCTATTCCTCATCCGCGCAATCCCTGAAATGCTTATAAAAATAATGTTTCAGCCTTCACATTTTTCCCGCTCTCTTCCCAAGCAACTTTTCTAATGCTATGATTGCTCTTGAATCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGCTTTGAGGCTCCAGCC # Right flank : ATGAATTAGTGCGATCGCTATGAAATGTCCAAGATGTAGATCAACTCATATTCACAAAAATGGCAAACAGCGAGGTAAACAAAATTACATTTGTGTAAAATGTAGCCGTCAGTTTATTGATTTCTATGAACCGAAAGGTTACTCACAAGAAATTAAGCGCGAATGTTTAGAGATGTACGTAAATGGTTCTGGCTTTCGTACAATAGAACGGGTGAAAAAAGTGCATCATACGACTGTCATCAATTGGGTAAAAGAGCTTGGTAATACTTTACCTGATACACCCGAACAGGATGAAATACCAGAGATTACCCAAATTGATGAGTTGGAAACATTTATTGGTAAAAAAAAACAAAATTTGGTTGTGGACAGCAGTGAATAAGCACATTCCCGGTGTTATGGCTTGGATTTTGGGGAATCGCAGTTCCGACACTTTTAAGCTTTTGTGGCAGACTGTAAGCTGTTGGCATTCTTATCTTTATGTTACAGATGGTTACCCAGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 259800-266909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXXN010000005.1 Nostoc sp. MG11 NODE_5_length_423728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 259800 37 100.0 32 ..................................... AAGCTCATATTGATAAAAAATCCAGCAATTAA 259869 37 100.0 34 ..................................... CTATATTGATATGGTCAATGAACAATATCAAGAA 259940 37 100.0 35 ..................................... TTAGTTAGTGGTAATTCTTCCTTTGCCGTAATCAT 260012 37 100.0 37 ..................................... TTTTATAAACAAGTACGTTGAAGAATCACCACGTACA 260086 37 100.0 34 ..................................... AGCAAGCGATCGCTGAGTAAACATTGGGGTAGTG 260157 37 100.0 37 ..................................... TTTATACAACTCTTTAAACTAACTACATATAAATACA 260231 37 100.0 37 ..................................... CAAGACACCACCATTACCGTTGACGGAATCCTGCAAG 260305 37 100.0 37 ..................................... AAAACGTAAGTCTAGCCATGCGCTATGAGTCTGACGA 260379 37 100.0 38 ..................................... CTTACAATCAATGCGTTACCCGTACTGGCAGGCTTAGT 260454 37 100.0 33 ..................................... AAAAATTCTTAGTTCTCTATCCCAACTACTACC 260524 37 100.0 35 ..................................... ATTAACTCATTCAATTTTTGGGCTTGATAGCTATT 260596 37 100.0 35 ..................................... TTATTAAAACAGCAAAAATGCAATAGTGCAATACC 260668 37 100.0 35 ..................................... CTGAACATCTATAGATTTGGCGTTGACTTTTAAGG 260740 37 100.0 34 ..................................... AACAAACACTAACAAGTTAGCTTTGAGCTTACTT 260811 37 100.0 34 ..................................... ATTTACGCCAACAATACACTGATTGCCAACAACT 260882 37 100.0 32 ..................................... TCATGAAGAATTTGGTATTACGGTCGTAAAAG 260951 37 100.0 34 ..................................... TTACCACAGAATCCCTGATTAGATTGATTTAATA 261022 37 100.0 34 ..................................... AAATCGAATTTTTGCAAGGGCTATAATTGTGGCG 261093 37 100.0 36 ..................................... TCCGCCACTGATGAACATTCCAGTACTTGCTATAGA 261166 37 100.0 34 ..................................... TTGAATGAAGGAGCGATGTTTGCTAGCTCCAAAG 261237 37 100.0 39 ..................................... GTCGCCAATCTTCAGCAACGGAGCTAGGGTATTGGGCGA 261313 37 100.0 33 ..................................... CCCTCGGAATCAATATGGAGATTTGCAGGATAC 261383 37 100.0 35 ..................................... AATTACAGCAATACTACTTATGTAAGCCATAGAAA 261455 37 100.0 36 ..................................... GTTAATTCGGAATGCCCAGATTTTTGAGTGGTGTGA 261528 37 100.0 35 ..................................... TTAGCTGGATCATCGGCTTCAACTCCCTTGATCAT 261600 37 100.0 33 ..................................... TCAATAATTCTTTGGCAGTACACCGGCCCAGAA 261670 37 100.0 34 ..................................... ATCGTGCTAGTATCGCCATCCTTCATGGTGCAAG 261741 37 100.0 35 ..................................... TTTGGAAAGAGTATCAGTAGTTCTTTCAGCAGCAT 261813 37 100.0 34 ..................................... CTTTGGCGATGTGACGGAGCCTAACTAATGGACG 261884 37 100.0 34 ..................................... ATTTAAGGATGGGGTGACTTATGGCAGCAGAAAA 261955 37 100.0 35 ..................................... CGAGATACTGCGACAAGAAGGCGGTGGCTGGCAGA 262027 37 100.0 41 ..................................... AACAACGGAATACCTAGGATCCATGCGGCCGGCTGCAACTG 262105 37 100.0 34 ..................................... ATCCTGATGCAGACATACAAGACTACGCAGACAT 262176 37 100.0 34 ..................................... AATACTCAGTACCTGGGGTGTAATTGTAAACAAG 262247 37 100.0 34 ..................................... GCTAAAGGTATTTTCCTTTCTATGGAATCTACCC 262318 37 100.0 32 ..................................... AAATCAGCTAACTCCCAAACTTGCTCGGTTAC 262387 37 100.0 37 ..................................... AGAACAGGAAGCAAAAGATATATGGAATGACTTTTTT 262461 37 100.0 34 ..................................... TCACTCAGCGCTGGCAGGTCTTTCTATGCCTCAG 262532 37 100.0 34 ..................................... GCAGCTGATGTTAGTAGAATACTTGGATTGCTTT 262603 37 100.0 34 ..................................... TTTCTGGTAAATCCGCCGCTGTGGCTGGTGTAGT 262674 37 100.0 34 ..................................... ATGCTTGCTGTATCGCCATCCTTCATTGTGCAAG 262745 37 100.0 35 ..................................... TAAATTCATCGCGCACTATTGATTTAACTTCTGCT 262817 37 100.0 34 ..................................... GCATCTTCTGGACGCATTGCCAAAGCTGAGGTGA 262888 37 100.0 35 ..................................... AAACCATATCGTTACGTATTTTGGACAGAACCATA 262960 37 100.0 37 ..................................... AACTAATAATTGCAACTAATACTTCGTTGTTTAATAT 263034 37 100.0 34 ..................................... AAAAAGTCAGAATCGAAGAAGCAAGGTTTGGATC 263105 37 100.0 36 ..................................... TTTACTTGAAATCTCATGGTTTATGTCCTTGTTTTG 263178 37 100.0 35 ..................................... AGTGCTAGACATAGACTACGCCAAAGGAGACTACC 263250 37 100.0 34 ..................................... GCCTTGTCTATAATTTGCACCAAAAGCAGTAAAG 263321 37 100.0 35 ..................................... AGAAAGTCCTTCTATTTGTGCCCAATCAGCATTAG 263393 37 100.0 34 ..................................... AAAGTGATTGACTTTTGCTTGCCGGAATTCAATG 263464 37 100.0 36 ..................................... GCTCGTGATATTGATAGCGCGAAAGCATTTGGTGGA 263537 37 100.0 36 ..................................... CTTACTCACAGTTACTTAGCGCCACTCGCAACACAT 263610 37 100.0 54 ..................................... ACTTGCATTTTCTGTTGCGCCGAAGAAAACACCAGGTAAACCCAGAACACTAAG 263701 37 100.0 32 ..................................... ACTTGCATTTTCTGTTGCGCCTCCACTGTTGC 263770 37 100.0 41 ..................................... CTTGAAAGCGATCGCTTAACACTCCTGCATCAGTGTTCCAA 263848 37 100.0 34 ..................................... AAGCTATATTGGATGTTTATGATGTTGCTAGAAT 263919 37 100.0 36 ..................................... AGCTTTTGAAGATAGGCAATCAGATGGTGATGGCAA 263992 37 100.0 36 ..................................... TAGCCGCGAAGGCTGTGAAGATATTCAATGTCTCAA 264065 37 100.0 35 ..................................... CAATGAGCAGCAATACGCCATCCGCGTAACCTATC 264137 37 100.0 37 ..................................... ACGCAAGCAATATTCCTCGACTTGGTGGGCAAACAAA 264211 37 100.0 34 ..................................... GCTTATTCAAAAATTTATATAAATTAATAGTCCC 264282 37 100.0 35 ..................................... TAACTCAAATGCCCGAATTAAAATAATCGGGCATA 264354 37 100.0 35 ..................................... AAGGAGACTAAATCATGGAAGTTCGTAAGCTTTTA 264426 37 100.0 35 ..................................... ATCGAAGCACACATAAACAGTACCAAACGTATTAA 264498 37 100.0 35 ..................................... CACTATCAAGTACAATAAGCGGTTGTGCATGGCAA 264570 37 100.0 34 ..................................... GCTTTTATTTGCTTGTTCCCAATTGCAAGAACGA 264641 37 100.0 36 ..................................... AAATTTTCCGAAATGGATGATACTGAAAAAGTTGAA 264714 37 100.0 34 ..................................... TTTGATTATTGCTGGTACTGATCATCGCCCTGAC 264785 37 100.0 36 ..................................... GTCTTTATCTGGTAAAGCTAGATGGTGCGCTCGATA 264858 37 100.0 42 ..................................... AGCGATCGCTACCCCTATGGGGGTATCCCAAGCAGCAACAGG 264937 37 100.0 37 ..................................... CTATTAAAGCTTCTTGATAAGTTGAATATCTCATGCA 265011 37 100.0 33 ..................................... AAATAGTATAGGTAACAGCCTTTCCCCGGTAAG 265081 37 100.0 35 ..................................... CTCTCATTTCACGAGCTAAAACCTCAAGTCCTTGT 265153 37 100.0 41 ..................................... GTTACCACCTGCTAGGGCAGAAACTAGAGTTAATCTGTGAT 265231 37 100.0 22 ..................................... ACCAAGTCCATCACCAAGTCCA Deletion [265290] 265290 37 100.0 36 ..................................... CAAGTAATACCGCAGTTGCATAATTAGCTACTTTGT 265363 37 100.0 34 ..................................... AGAACAGAGGATACTGTTTTAATAATTCTTCACG 265434 37 100.0 38 ..................................... TTTTAAAAGCGGCGGGAACTGTTGCGGCGGTTGGTGTA 265509 37 100.0 35 ..................................... TAGTCGATTGGAGTAGGTAAATGTCTCTTCCAGGT 265581 37 100.0 32 ..................................... TTATTACTGGTGAAGTTGAACCTTCCGACGAG 265650 37 100.0 33 ..................................... ATCCAGATATGTACATTAGGCACATGAGTTTGA 265720 37 100.0 32 ..................................... ATCTATGGCGTCGGAGTCTAAGTTCTTGTAGA 265789 37 100.0 36 ..................................... CTTGGAGAAACTGCTGGTGGTAATAGTATCTTTAGA 265862 37 100.0 34 ..................................... TAGTTTTTTAATAGCTTCAATTACTAAATGTAAA 265933 37 100.0 35 ..................................... AGCAGCAACAAAGTCATTAACTCATTCGATTTTTG 266005 37 100.0 34 ..................................... ACGTGTAGAGTACGAAAAACTCAAGACTGGAGGT 266076 37 100.0 33 ..................................... CAGTTGCGTAAGTTTGTAAAGCAAGGGTTTTTG 266146 37 100.0 34 ..................................... CCAAACTTCGCTATTAGAAGGCATTTCCAACATA 266217 37 100.0 33 ..................................... CAAGCACCAAGAACTCCTGAAATCATACATCAG 266287 37 100.0 32 ..................................... CTTTGCCCAATGACGCGGGGACTTGTGGGAAC 266356 37 100.0 37 ..................................... CTATAACCTTCTTCACATGAGTAAGAAATTCAATATC 266430 37 100.0 37 ..................................... TTGACTTGTGAATGCTCATATAGCCCAAAATAGATGA 266504 37 100.0 38 ..................................... TTTGAGTAGCCGTGGCAGTGGTCAGCGCTCGGATATCC 266579 37 100.0 35 ..................................... GAGGCTAAATCAACGCTAGTCGGCTTAACAGTTGG 266651 37 97.3 36 ..................T.................. AGCTTGCCATTATCGTCTAACAGCCAGTTAGAATAT 266724 37 97.3 41 ...........A......................... ATTTAATCTCTACAAAGTGCTGTGGCTCTATGCTGCCAAAA 266802 37 100.0 34 ..................................... AACAAGGTTATGCCTCTTCTTAATTTTTTGGCAT 266873 37 94.6 0 ...............................AA.... | ========== ====== ====== ====== ===================================== ====================================================== ================== 99 37 99.9 35 ATTTCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CGAAATAAATACCCGCATTCCTTTATATAAACAAGCCCCAAAAGCATTTGTAGAAGGGGAAGATATGACATCCTGGTTGTACTTTCAAAAGCACTTTCAGGCTTATTTGGCTGGTGAAACCTTCCCGCTTCCACAACCAGAGGAGGAGTAAATTAGCTTAAAATCAACATTTAACTCTTGGCTGGAGAGATGTGGGAATTTCTCCAAGTTGCGATCGCTTATACTTCAGTCAAGGTAGTAGGCGATCGCTATAATAGTTGCAATCGTTACCAGTGCGCGGATGGGTAGGTGTTGCTCAAGAGGTGATTGAAAAAATGGCTGAATCTCTCTATATACGATAAGTTGAGGACAATAACACTTTCAAATCATTCGCGCACCTTATCAGGACTGACTTTTAGCCATTTGCATCTAGTCAAATTACAACTGCTTATGTTATGATTTCCCCATTCGCGCAACAGAACCTTGAAAACCAAATAAAACAAGGCTTTCAGATCCCGGTG # Right flank : CATGTAATCAGCGGTAGAGCCAATTTCTTTTCTTATTCCAAATCGAGTGTTGAAAACTCTTATCTTTGCGTCTTTGCGCCTCTGCGTGAGATTAAATTCATACTGCAACCCTTAGCAGTAATACAGTCAATTTATACCCATCCAGACTTGAGAACATGCGTATAAAGCCTTCCAACAAAGTAGAGATGGATTGCCAACTTGAATTTCTCAAAGCCGATAGTGCTTGATTATATATTTTAAGTTATGTACAAAAGAGATGCGATCGCCTCCTGCAGAGTGTAGCCCATCGCACCCATGTGCGACATAAGTTTTTAGCTTCAACTGAATCATAGGGTGGGAAAATAAGGATGAGCAATACTCATTCCCAAACTTGCTGGGTTATTTGCTTAAGACAGATAAACAGAAAATTTATTAATATTTATGACTTCAACCGTTCCCGCTAAAACTCGGAAGTTACCAATCCAAGCGATAGGAGCCAAGATTTTCCACTCGTGTAACAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 568660-573258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXXN010000001.1 Nostoc sp. MG11 NODE_1_length_610499, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 568660 37 100.0 34 ..................................... GGGTAAAAATCGTACTACAAATTCGCTTTTTCTT 568731 37 100.0 35 ..................................... TTATTGGATTCCTTAACTCGATTAATTTATCTATT 568803 37 100.0 34 ..................................... TACTATGTACCCAGTACCACCGCTTCCCCTACCT 568874 37 100.0 34 ..................................... CCAGTGCCTTGCCCTAGCAAAATACGCACACTAG 568945 37 100.0 35 ..................................... TTCAATATCTCTAGCTTTGAGATACTTATCTGGGA 569017 37 100.0 35 ..................................... TCACAATTTATGAAGATTGTATTGTTGTAAAAATT 569089 37 100.0 34 ..................................... TCAAAGGTATAAAACTTAAGCCTCTTGATACTAT 569160 37 100.0 33 ..................................... CCTTTATCTCCATCTGTGTGGGCACATTATAGA 569230 37 100.0 33 ..................................... GTATGGCTGAAAGTCGTTTATTGGCAGGCTAAT 569300 37 100.0 37 ..................................... TACTAAGCTGTACTCAGGCAAGATTAAAGACAGGTAC 569374 37 100.0 34 ..................................... TAAAGAAAGTCACGTACCAGAATAAACAAATAGC 569445 37 100.0 40 ..................................... GAATTCAACATTTCCACCCCCACTGGATACCTGGAAGGAA 569522 37 100.0 34 ..................................... ATATTATAAATATAGAAACAGAGGAGAAAGTAAA 569593 37 100.0 34 ..................................... TATACCATCCGAACCATAAGCCGCGTTACCGGGA 569664 37 100.0 35 ..................................... TTTTTGTTAAATAGCGTCTATAGTTAAGAAAGAAA 569736 37 100.0 38 ..................................... TGCTACTGTACATGACGAGCTGCTTGGTTATGTGCTTA 569811 37 100.0 33 ..................................... ATTTACGGAGCCGGAATCTCCGGTATCTGAATA 569881 37 100.0 38 ..................................... CCATTGAATAAGAGTAGCAAGCTAGTTGTGTAGCATAG 569956 37 100.0 34 ..................................... GGGTACGAGACTTGTAGACGAGGAGGCATTAATG 570027 37 100.0 34 ..................................... TACCATCTTCCTTTTTAAAGTACTTCATTGCTAA 570098 37 100.0 33 ..................................... CATTTTTTCTTACTATGTGGTCTATCTCCAATA 570168 37 100.0 37 ..................................... GCGACCAATTGCCTAGTATCCCGGTCTTGATTCTATT 570242 37 100.0 35 ..................................... TCAGTAACTAACTTGACTGATACATTAACTGGTTT 570314 37 100.0 35 ..................................... TAGGTAACAATGGTGATTTATATATTGACATTACC 570386 37 100.0 35 ..................................... ATGTTTACAATTAGCCCAGACCGTGCGTATGTTGA 570458 37 100.0 37 ..................................... TGGAAAGTTGTTGATTACGCTGTGTGTACTGATTTAG 570532 37 100.0 43 ..................................... AAATACCATCTAAGCTTTCCAGCTTTTAAGCTTATGGTATTAG 570612 37 100.0 34 ..................................... ATTTTAATAAAGCGCTGAACACTGCTAATTTAGC 570683 37 100.0 45 ..................................... TTTCTGCTGCTTGCTCCATCTTTACTCAAACAAACTTCAATGCTC 570765 37 100.0 35 ..................................... TTTCTGCTGCAAGCTTAGACGTACTTATCCCTTCG 570837 37 100.0 36 ..................................... AACACCCTCCTCAATAATTTCGGAACGAATGCTAAG 570910 37 100.0 34 ..................................... ACTCACCTCAAATGGCGTTTGAGATTTTTAACAC 570981 37 100.0 33 ..................................... TAAAATCGTGTCCTATATCACTTAATACCCCAC 571051 37 100.0 36 ..................................... TTGTTTACCTTAACATCAATCGCATTATCATCTGTT 571124 37 100.0 35 ..................................... AGACTCGTAGCGCATAGCTAAGCTGACATTCTGCC 571196 37 100.0 35 ..................................... AATAAACGCGATTCTTGTAGCAGGAATACATAAAG 571268 37 100.0 38 ..................................... GTGTTAATGAAGATGCGTGAACTCCACCCAGAGAATTT 571343 37 100.0 37 ..................................... AAAAATGGTTGCTCACGCACAAGGTCGAAGTGTGAGC 571417 37 100.0 34 ..................................... ACATATCCAGAGAAGTAGGCAAAATCATATTGGG 571488 37 100.0 34 ..................................... AGCATCAAAAGCAATAGTTTCCAAAGCCACTTTA 571559 37 100.0 32 ..................................... GTAGTTTTGTATCATGTTGTGGGAACACGCAA 571628 37 100.0 36 ..................................... TAAGAAAATCTTGCGATTGTCGCTCATCGCCGCTTG 571701 37 100.0 34 ..................................... TTGTAGAATTACTAACTCAAGTTGATACTAAGAT 571772 37 100.0 35 ..................................... TTCCTTTTTCTAATGATTTAAGAATTAAATAATCG 571844 37 100.0 34 ..................................... AGACCTACAATCAGGAATTCTCAACAGATGTGGG 571915 37 100.0 43 ..................................... CTTAAGCGAACTACAGCACCTACACGATTGGGAGTGGCTGCAC 571995 37 100.0 41 ..................................... ACAACACAGTGCCCAGCAACAACAAGCAGCCGCACAGAAGA 572073 37 97.3 36 ...........................A......... AAGAAATAAATTAAGAGAAGAATTAGGTGGTAGTTT 572146 37 100.0 38 ..................................... GGTATTTTTCCTTTATCAAACAAGCCTGTTGTTTCAAG 572221 37 100.0 35 ..................................... ATTCAACCTAGCCCACTTGGTGTACTCACTGCTGG 572293 37 100.0 35 ..................................... TTTTGCTCTCTTGCCAAACTGTGCTATCAAATCTC 572365 37 100.0 42 ..................................... GTGTAGATAGCCCTTGCCCAAAAAAAGCAACACGCTCAACAA 572444 37 97.3 41 ............C........................ AAGGATTGAAGCTGTATGAGTCAGTGGCACAAACCCGGGTT 572522 37 97.3 35 ............C........................ ATTATAAAATTTTGTGATGATGTTGGAGTAAATAT 572594 37 97.3 34 ............C........................ TCTGTAAAGTGTTTCTAAGGATTTTGTTGATAGC 572665 37 97.3 38 ............C........................ GAATTGACCATTGCTGAAATTGGCGCAAAGATCAATGA 572740 37 97.3 32 ............C........................ AATACCTTTTATTGGCGTACTCCCCTTGCGGA 572809 37 97.3 35 ............C........................ TAAGAGATGGCAGATTTCAATTTGGCAGCGATCGA 572881 37 97.3 35 ............C........................ TAAGAGGAACAACACGCCTCTTAATACCCCCATCA 572953 37 97.3 36 ............C........................ CTTGTGGCTGTGATGTGACAAAATAAACCAAACGAG 573026 37 97.3 36 ............C........................ AAGAAGAGAAAGCCCAGAGCTATGAACTATAAGAGT 573099 37 97.3 34 ............C........................ GCTACTTTGTGGCGCGTGGATGCCAATTCTACCG 573170 37 97.3 13 ............C........................ TAGAAGCGCAATA Deletion [573220] 573220 37 78.4 0 ...C.......CC......T.......AA.....GG. | C,G [573245,573251] ========== ====== ====== ====== ===================================== ============================================= ================== 64 37 99.2 35 ATTTCAATTACAAAAAATCCCTATTAGGGATTGAAAC # Left flank : TGCAACTCCTACCCTTGTCAAAGTTTGGCCTCACCCGATTCGGCGAATTGTTGGCGATTTAGATCATGTGGAGAAAATTTTACACATGTTAGCTACTAAAGAAAAACTTTAAATTTTATTAAGACTATTAATTTGTCAGATGCGACAATTAACTCGGTCATGCTTCGGTTGTGAGGAGTGCGTAGTTTAACGCCGTAGGCATTGCTCCAAAGTTAGCTAAGCTGATTGATGATATGCTTTGCAATCAGACTAGTTTTTTGCTGAGTGCGCGGATGGGTAGGTGTTAGGGAAGTGGCGACAAGAAAATGGCTGAATTCCCTTGTGTGTAAGAAATTGATTGCGATCGCATCTTGAAAATCTTGAAACTATCCGCGCACCTTATCTAGACTAGCTTTTAGGCATTTGCATTTAGCACAACTACCATACCTTATGTTATGATTTCTACATTCGCGCAACAGAACCTTGAAAACCAAATACGGCAAGGGTTTCAGAATCCTGCC # Right flank : CACAGGTTTCTATTATGAATCGGGGGTTGTTGATTCTCGAACCTGACCCTCAATCATCTGAAGCGATCAAAGTTATGGTTTACAACCGTTGTAGTAGACTTAAACCATGGGTATCAGTGCCACATGTATTGAAAAGAGAGTATTCATCAGCTAACTTTTGCATTTGTTGTGATTCCAAAGCGCTAGGTTGCCAAGGGTTAGGATTATTGTAGGCGTAGAAAGTTTCAACACCATCGATACCTTTTTGGGCAGCAGCAGGAATTAAGTCAAAATGCGATCGCTTGTACCGAGCTGGATGAGCAAGTACTGCTAATCCTCCAGCTTGATGAACAGCCGCAATCACGTTACTTGCCTGATATTCTTTGCCTGTAGTAGCTTTTCTTTGCAGATAAGGTTTTATACTATGGTGTTCTGGCTCGAAAGCATAAGCCAAAATGTGAACTTCTATGTCCAAAAGGTTGGCATTGATTTCCACGCCACTCCACAGGTGAGGAGTGCTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTACAAAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //