Array 1 42110-39519 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAM01000017.1 Escherichia coli strain 34-1BK entry17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42109 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42048 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 41987 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41926 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41865 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41804 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41743 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41682 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41621 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41560 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41499 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41438 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41377 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41316 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41255 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41194 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41133 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41072 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 41011 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40950 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40889 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40828 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40767 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40706 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40645 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40584 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40523 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40462 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40401 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40340 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40279 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40218 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40157 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40096 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40035 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39974 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39913 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39852 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39791 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39730 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39669 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39608 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39547 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43931-45486 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAM01000070.1 Escherichia coli strain 34-1BK entry70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43931 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 43992 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 44053 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 44114 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 44175 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 44236 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 44297 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 44359 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 44420 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 44481 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 44542 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 44603 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 44664 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 44725 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 44786 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 44847 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 44908 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 44969 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 45030 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 45092 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 45153 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 45214 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 45275 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 45336 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 45397 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 45458 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAGCTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //