Array 1 70901-74122 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEZ01000003.1 Marinitoga sp. 1135 Mar_1135_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 70901 30 100.0 37 .............................. TTTTTTAAGCTTGTAAGTCATAATCTTCGCCTTTCTT 70968 30 100.0 37 .............................. GATTACGATACAGCTTTTGAAGAATTAACAAGATTAA 71035 30 100.0 35 .............................. CAATTAAATCGGGGTAATAAGAGTCTCTTAATTGA 71100 30 100.0 35 .............................. TCGGCATTGCAATACATCGAGAAAATAGAAGCACA 71165 30 100.0 37 .............................. GTAATTACCGTCGATGCAATGCCAGCATTAGCAGATA 71232 30 100.0 36 .............................. TTGAAGAATACAGCGTAACTCTTTCAAAACTCTTGG 71298 30 100.0 38 .............................. GAGTTTAAAGAGGCTGTTAAAAAAGGTAGGGAAGATGC 71366 30 100.0 37 .............................. TTTTCGCTATTTAAGGGGTTTTGAGAGGTTGTTATGA 71433 30 100.0 35 .............................. CGTTTAAGATTTGTTATAACAATTCTATTGAGAAA 71498 30 100.0 36 .............................. TGGTATTCTACAACGTCTTTTATAGTAGCATTTTTA 71564 30 100.0 38 .............................. CAACCTTTCCCAGTTTGGGACGAATTGGGGTTCAAAGA 71632 30 100.0 38 .............................. GCCTGAAGAGATAGACTTTGAAGAAAGGTCTATCTCTG 71700 30 100.0 35 .............................. TTAAACGACTTTGCATGGAATATTGAGCATTTAAT 71765 30 100.0 35 .............................. ATTTCATGTTTTAATCGTTTTCAAACAGCTTTAAT 71830 30 100.0 36 .............................. TAGCTAGAGAGATCAAGGTGCTTATCACCTTTAATA 71896 30 100.0 37 .............................. AATGAAGTAATTTTTTGGTACATTCAAAGAGGTTTCA 71963 30 100.0 36 .............................. TAATAAAGACATTTTCATTTTTGTATTGATATGTGA 72029 30 100.0 36 .............................. ATTTAAAGCTTTAACGAATTCAAATACATCTTCCCA 72095 30 100.0 38 .............................. AACAGTATGTATGATTGGTATATACGCGCTGACGGTAA 72163 30 100.0 34 .............................. TAATTAAATCAGGATAATAAGAGTCTCTTAATTG 72227 30 100.0 36 .............................. AAAGGTGATGTAATTGGAATTGGAGAAACGGAAAGA 72293 30 100.0 38 .............................. TTTAATACAATCGTATATTTAAATATATCCATATCAAA 72361 30 100.0 36 .............................. GTAGTGCCAAGGCAAAAACCGTTGGATACAGAAACA 72427 30 100.0 37 .............................. TCTGGATTACAAGCTTATTTCAACAATGCAGTAACAA 72494 30 100.0 38 .............................. TTTTCAGGAGCTGTATAAGATATTGTTTTTGTTTCAAA 72562 30 100.0 38 .............................. GTTTTAGACAGAGGTAATTTTTCTCACGTTGAAGAAGA 72630 30 100.0 38 .............................. TCAAATTCTGTTGCTTTACCAAATTCAGGCATTATACT 72698 30 100.0 36 .............................. ATATAAATATAATGGTAAGCTTATATTCCCGGTTGG 72764 30 100.0 36 .............................. CAACCACACCACAACCAAAAACATCGCTTTTTGGTA 72830 30 100.0 35 .............................. TATTATCATCTCCTTACTTTTTCATAAACATCATA 72895 30 100.0 36 .............................. AGATAAGCAACAAATGTTTTCCTGTTGAACCTGTTT 72961 30 100.0 35 .............................. GCTAGATACCCTATGCTTGAAGATTTAGACTATTA 73026 30 100.0 34 .............................. AATCACTCCCAGCACCCGCCCCTAAACATGCCCG 73090 30 100.0 35 .............................. AGTTGCGAGATTTTCTCGAGCATCCCACGCTCGAG 73155 30 100.0 36 .............................. TTGATAGACATCACTTAAAAATTCAATATTCCAAAA 73221 30 100.0 36 .............................. AGACAGGTAGCTTGGAGTATTATAAAAAATCCAAAG 73287 30 100.0 40 .............................. ACTTACGAAGGTATTAATACATCTGCTGATGTTGCTGTTG 73357 30 100.0 35 .............................. TAAAACATATCTCTAAACATACATTATAGCTATAG 73422 30 100.0 36 .............................. CCAAAAGAAACTAATTGATAAGGGTTGATTAGAATA 73488 30 100.0 38 .............................. TTAATCACTACTGCAGCTTCTGGTCTTAACCCACCAAA 73556 30 100.0 37 .............................. GAGGGGTCAATAGACATGTAGATGCCTTGATAAGGGA 73623 30 100.0 40 .............................. GAAGGTAATTGTTTGCATCTAAAACCAATATAATCAATTA 73693 30 100.0 37 .............................. TTGGAGGCCATCAACTTTTGCCTCCAATGTGAGGTCG 73760 30 100.0 40 .............................. TGCAAGATTGTTTAAATCTTCATTAATGAATATTTCATTA 73830 30 100.0 35 .............................. ATTTTCTTTTTTATATAAACTGATTTTATGTTGTT 73895 30 100.0 35 .............................. CCGCCAAAGTGAATATAAAATTATTTTTCTTATTA 73960 30 100.0 37 .............................. AAAAGCGATGTTTTTGGTGCTGGTTGTTTAGTTGCTC 74027 30 100.0 36 .............................. CGGAGACGGGAAGACGCTGAGAAGGTGGAGGAGAGA 74093 30 96.7 0 ..........................G... | ========== ====== ====== ====== ============================== ======================================== ================== 49 30 99.9 37 GTCTTTAATAATCCATATTGGAATGTAAAT # Left flank : GAAAAAGTTTATGAAGGTTTTAAACTATGGTGGTGATAAGATTGTATATTATTTTAGTATATGATATTAAATTCGATGAAGAAGGAAAAGGGCAAAAAATATTACCTAAAGTTTTTAAAATATGCAAGAAATATCTTTATCATATTCAAAATTCTGTTTTTGAAGGAGAGCTAACAAAAGCGGAAATTCTAAAATTAAAATCGGAACTAGAAAAAGTAATAAGAAAAGACGAAGATTCTATAATAATTTTCAAAAGTCGGCATGAACGTTGGCTTGAAAAAGATTTTTGGGGATTGAAAGAAGATAAAACATCAAACTTTTTGTGATTGTCGATGTTCAATATTGTAAAAATTATAAGGCAACGACAGGAATTGTAAGTCACTATTATAAATTATTCTAAAAACATATTACTTTATATAAAGAAATTTTTTCTTACTCTTTGATATTGCGACAATAAAAATATACTAAATTCTCTTATAAAACTCATTACAAATGGCGGT # Right flank : TTAGTGCAAATATTTTGAAACTGAGGTTTTCGTTAAAAAAGTTCTGGAAAATTATGATATAATAAATAAAGAGAATTTTATTGTAAAAACTAATGCTCTATTTGGAAAAATTAAAACTGTGTTTATTGAAAAAGAAAAACGACTTGATAAAATTATGAAGAAAGAGGTTTTATTATGGAAAAGGAAATAGATGCTTTAACATATGCATATAGATATAATTCAGCAATAACAGATTATGAAGATGATCCATATTATGCTGAAGATGCAGCATATTTTCGTGAAATGGCAATGAGAAAATTGAAGAAAGTAACTAATCCTCGTATAAAAAAAGAGGCTACCAAAATAATTGAAGAAACAGATCAAATTCTAAAAAAAGAACGTAAAAATATAATTAGAATACTATCAGGTCTTTCTGATATAGACAAAAAAGAACTAAAATATTTAGAAAGAATATAACCTGTAAACTATATTCATACCTATTATTTTCATTACTATATAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTAATAATCCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 132532-134491 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEZ01000003.1 Marinitoga sp. 1135 Mar_1135_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 132532 36 100.0 41 .................................... ATATTTGGGAGCAAATAGTGCTCCCAATCATAGCCAAGATA 132609 36 100.0 41 .................................... ATATATTCTTTTTCAGATTCCTTGAATTCATCAATAATATC 132686 36 100.0 40 .................................... CATTTATAGCCACGCTATTAAGTTTTATCCTCTTAATTCT 132762 36 100.0 41 .................................... CAAATATGCTGCGGTTTGAGTTCTTCCTTCGGCCTTGCCGT 132839 36 100.0 41 .................................... ACAAAATTTCTCTCATACCACATTTGATTACCACCCACATT 132916 36 100.0 41 .................................... ATAAACCCGGCCATTTCAAGGCCGAGTACAAAGCCCTCAGC 132993 36 100.0 40 .................................... CATCACCGCCTCAGTCGGACGACGCTGAGGCTGTCTGCTC 133069 36 100.0 41 .................................... GGGTCATAATCTAATACCATTTTTAAACGTAAATCACCATT 133146 36 100.0 41 .................................... TAGTATTCCAACCAGTCCTCCATTGATTCAAACCCTTCTTC 133223 36 100.0 40 .................................... TTCTTCTTTTTTTATGGTCACGCAATACATACCCGTAATC 133299 36 100.0 43 .................................... AAGTTGTTGAACCTTTTTCGAAGCCTTCAACGAAGGCTTCTTT 133378 36 100.0 41 .................................... TAAACTTCTTAAAAATCTTCTAAAATCTCCTATTTTAATCA 133455 36 100.0 41 .................................... TTAAGCCCCTGTTAAAATAAATTTTATTCTTCTTCAGTTAC 133532 36 100.0 40 .................................... TCTCTTTGGCGGATAATTTAACATCCGCCAATTCTTGAAG 133608 36 100.0 41 .................................... AATTTTCTTCTTCATCTCCGAGGTCATCGAAATACTCGGAC 133685 36 100.0 43 .................................... TATCCTTCCTCGGGCAGGGTATGCCATACTCCTCTTGAAGGGT 133764 36 100.0 42 .................................... TACGAACAGCGGCTTTAATGGTTGGCCGTTTAATCCTGCTAT 133842 36 100.0 42 .................................... TATAAACCTGGAGAAGCTTATAAGTTATTTCTGAGGTAGCTT 133920 36 100.0 40 .................................... CAGTGCCTTTGATGTCAATCTCATTATGTTCATTTGTAAT 133996 36 100.0 41 .................................... TATTTTTTAAATTCCTCATATCCTTTAATCATTTCCTCCGG 134073 36 100.0 41 .................................... CGTTCTTTTTGTTTTCTATTGTTTCATATGTTCCTTCTTCT 134150 36 100.0 40 .................................... TGTTATAATACATTTGAAAACTTTCGGTTGTCACCTGATA 134226 36 97.2 40 ..........C......................... ATTCCATGCCTTGAAATCCATAAAATCTTTTTCACTTTAA 134302 36 97.2 41 ..........C......................... TGAATTATTAATGTTGTTTCTCTTGGATATTTTTTTTCATT 134379 36 97.2 41 ..........C......................... ACATCGCTTTTTTCTGCCAAATCATACCAAAAATCTACAAA 134456 36 94.4 0 ..........C........................G | ========== ====== ====== ====== ==================================== =========================================== ================== 26 36 99.5 41 ATCCGAATATAACTACTCTCTGAAAGAGATAGAAAC # Left flank : TAAAAATATACATATAAACTAAAAATTCCAGCCATCTACTCTTTACGATGGCTGGTTTTTTATATATAAAATAACTGATTTTTTGATATAAGTTGCAATTACATTTAATAAAAGATTTATAAAAAAACTAAATATAAAAGAAAAACAAAAGAAAGATATTCGCAAAATAGTCAAAATTATAAAATACGCATAAATAAACCAAAACATATCTACGAGGTTCGCAGAGGTTTATGATTTTGTAACACTTTTCAAAAACTACTTGACAAAAGGATTTTAGAATGTTATAATAAAAATAGTTCGTATACGGACCTAAATCCAAAAACACAAAATCTCTGAAAGCAGCTTAAACAAAAAAAAACTGAAAAACAGGTACGAATATAGATGAAAAGCGGATTACAGAGATTTTATTCGAAAAAATGCTGAAAATTTCAAAATTAAAAAACAGGTTCGAAAAATCACCTTCTAAAAAACGCTAATAATAACCACTCTAGAAACCAGCT # Right flank : GCTCCTGCATTAAAAGCAGGAGCTTTTTTATCTTTTAATCACCAAAAACTATTTTAAATTTCTCCTATAAATATTGACATAATAATTTCATTATGTTAAAATTATAATATATACAATTTAAATTTTTGGTTGGTGAGAATATGAATTTTAAAGAATTAGCATTTAAGGCTGAAGAAGATTTTGACTTTGAAAAAGCTATTGAATATTATAAAAAAGCATTTAATGAATTAACAATTAATGATGATTCATTAATTCGCTATGCAAATTTATTATTTGATTTTCAAAAATTTGAAGAAGCAGAACCAATTTTTGAAAAAATAGTTTCTGAAATTAATGACTCGGAGTATATGAATAAACTTGCTATTATTTATGAAGAGAATAATAAATTTGAAAAAGCATTGAAAATATACAAAGAATTAGGAATAGAATCTAAAGTGAAAGAGCTCTCAGATAAAATCGAATTAAAAGCACCATCTCAAAATGCAATAAAACGTTTTATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGAATATAACTACTCTCTGAAAGAGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 150961-153205 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEZ01000003.1 Marinitoga sp. 1135 Mar_1135_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 150961 36 100.0 40 .................................... TTTGCAGTTTTTCCACTTGCAAGCCCTTTCCAGTTTCCAT 151037 36 100.0 42 .................................... CATCATCGAGAGAATCTAAAAATTCTCTGATGACTACTTTAA 151115 36 100.0 40 .................................... TATTATAATATCCACTTAAAACTTCTATATAACTTGCTTC 151191 36 100.0 39 .................................... TAATATCCACCAATTCTTGAAGATTACCTGACTGGTAAT 151266 36 100.0 41 .................................... CGCTCATATTATTCGTCCCCCTTTTCGTCTTTCTCTTCAAT 151343 36 100.0 40 .................................... ATTCGGCAACGACACCGTTTTTGCTTCCTTTAAATTCTAT 151419 36 100.0 40 .................................... CACGTGTAATTCCCTCGTTAAAATATTTTTCTACTTCTTT 151495 36 100.0 41 .................................... CCGGAGTCAATCAACAGGTAACCGATTATCCATTTTTCTAA 151572 36 100.0 40 .................................... TTTATAAAGTCTTTTCAACTCTTTAGCTAACTTTTCATAT 151648 36 100.0 35 .................................... TTGGGGAAAGATTTTTCCCCAATTTTTATGAAATA 151719 36 100.0 41 .................................... TTATCTTTGTTTAATTTAAAAGATATTATTGCAACAACCAA 151796 36 100.0 39 .................................... TCTGGATGCGCAGCTTGAATTTTATCAACTTTTTCTTTG 151871 36 100.0 41 .................................... TGTATAAATCCTTGTTTTTCTAATTCATCTCTTACATCTAA 151948 36 100.0 40 .................................... TCCATTCAGGCGCATCCTCTTTTAATTCTTCTTTTATGAT 152024 36 100.0 41 .................................... TTATAGTATTTCTTTGATATAATTGAAATAGATTCATTAAT 152101 36 100.0 41 .................................... GTGTCAAATAATCATTCCTCTTCCTCTACTACTTCACCATA 152178 36 100.0 40 .................................... TGTTAAATTTATTTTATTCCTCTTCAGTTACAACCGACTC 152254 36 100.0 40 .................................... ATAATTATTTTTATTAAATTTTTAAATATATTTTTCATTT 152330 36 100.0 39 .................................... TTGCATTTTCTAATCCTTCAGTATTTACTAATAGAGTAA 152405 36 100.0 42 .................................... CAATCTATCAAGCCATTCTTCTGTATTTTCTAACTTATCTTT 152483 36 100.0 40 .................................... TATCTACTTCTACAGCATTTGATAATCTAAATGCTTTTAC 152559 36 100.0 41 .................................... TCTTCAAAGCCGTCATCCCATGCCGGGGAGACGGCTTTTTT 152636 36 100.0 41 .................................... TATAGTCTGGAAGTTTAACCTTTATTGTATAGGGTGTTAGT 152713 36 100.0 43 .................................... AACTACCTAACCATTCTTCACTTAAAACACTCGTTATAAACCT 152792 36 100.0 35 .................................... CAATTATCAGAAGAAGAAATGTTATTAATCCACCG 152863 36 100.0 40 .................................... TTTTGTTTTGGATAAAGAAAATTTTCTTAGTTATCATATT 152939 36 100.0 41 .................................... GATAAAAGATATGCCACTGGTAAAATAGATTTAATACCTGA 153016 36 94.4 41 ..........A...G..................... CATCTTTTCCTCTTAATTTTTTACTATCTATTTCTTTCCAA 153093 36 97.2 41 ..........A......................... TCTGATAAATCTTTTCTAATTGTATTCTGTAATTTTTTATT 153170 36 86.1 0 .............C.......A.......C.A...A | ========== ====== ====== ====== ==================================== =========================================== ================== 30 36 99.3 40 ATCCGAATATCACTACTCTCTGAAAGAGATAGAAAC # Left flank : GAGAATGGGGGATGAAAACAATAATGGAAGCATATGAGATTATTACAATGTACAAGGGAATATAAGCAATAATAAAGAATGGATAAAAAAAACAGCAATACTCGGAAATAAGAAATTTATAAATAAACTAAATATAAAAGAAAAACAAAAGAAAGATATTCGCAAAAATAACAAAACTATAAAATACGCATAAATAAACTAAAACATATCTATGAGGTTCGCAGAGGTTTATAATTTTGTAACACTTTTCAAAAATCACTTGACAAAAGGATTTTAGAATGTTATAATAAAAATAGTTCGTATACGGACCTAAATCCAAAAACACAAAATCTCTGAAAGCGGCTTAAACAAAGGAAAACTGAAAAACAGGTACGAATATAGATAAAAAGCAGATTATAGAGATTTTATTCGAAAAAATGCTGAAAATTTCAAAATTAAAAAACAGGTTCGAAAAATCACCTTCTAAAAAACGCTAATAATAACCATTCTAGAAACCAGCT # Right flank : ACTCCTGCATTTTTCAATGCAGGAGTTTTTGTGTATGGTATAATAACACCATGGGGGTGAAAAAATGAAGGAATTAAAAAGTCTTCCTCTGGGAGAAAGCAACTTTAAAACCATAATGGAAAACAATATGTATTTCATAGATAAAAGTATGCTCATAAAGGATATATTATCAGCAGGAAGAGTAATATTAATCACTCGACCAAGGAGATTTGGAAAAACATTAAATATGAGCATGTTAGAACATTTCTTTTCAATGAAAGAAAACAGTGAGAATTTATTTAAAGATTTAAAAATCTGGAATGAAAAGAAAATAATAGAAAAGTATTTAAATAATTATCCTGTTATATTTATTAGTTTTAAAGGCTTAAAGAAGAAAAAATATGAAGATATGAAAAACGGAATAAGAGAGTTAATATCAAAATTATATACAAAGTACGTATATCTCCTTAATACTGATAAAATAACACAATGGGATAAAAAAAGAATTATAGGTATATTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGAATATCACTACTCTCTGAAAGAGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 170708-173503 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEZ01000003.1 Marinitoga sp. 1135 Mar_1135_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 170708 36 100.0 35 .................................... CTTTTGTTAAAAACACTATTCTTGATAACCATCTA 170779 36 100.0 40 .................................... TCTGTTTTTTACTAAAGTCTCTAAATTCTTTTTGTTAATC 170855 36 100.0 40 .................................... GAAACATTATGTTTCCTGTTCCATTGAACATCAAGTTAAA 170931 36 100.0 38 .................................... TATATCTTCTTCTATCATTTTGTTTATTGTGTTTATTT 171005 36 100.0 40 .................................... GGCAGGCTCTTCAGGCAAAAGCCTGCCTTGCTTATTTTTT 171081 36 100.0 40 .................................... CCTTAAAGACTGGAGTTTTGATATAAATACTATATTCTTT 171157 36 100.0 41 .................................... TGTAAATTTTTTCGGGTGTTGTTATCGTGGTGGATATGGGT 171234 36 100.0 41 .................................... AATTCTGGGATCATTTTAAATTCATATGTATTTATATCTTC 171311 36 100.0 41 .................................... CACGATGGATACATAAATATAATCATCATCCACAAAATCAA 171388 36 100.0 40 .................................... CCATTTAAGCGGTCTCGAACCTTGAAGTAGTTCTCAAGCG 171464 36 100.0 39 .................................... TACTCCCAATCGTACCCAATAAATATTTTCCCATCAGTG 171539 36 100.0 40 .................................... CGGTTCGAGACCGTCTAAGCGGTCTCGAACCTTGAAATAA 171615 36 100.0 40 .................................... TGTATTTGTTGGTGTATTGCCGGTCAAAATTCTTTTTTCA 171691 36 100.0 42 .................................... TATTTATAATTCTTATATACTGCATTGAATATAACTTATAAT 171769 36 100.0 41 .................................... CTGATTTGAAACTTTTTATCAAAACTTCCATCGTAGAGGCT 171846 36 100.0 41 .................................... TTTCACTTTCATCACTCCCTTCATTTGCTGTTTATGTCATA 171923 36 100.0 41 .................................... TTATAATATCCACTTGTAATTTCAATATAATTACATTTTAC 172000 36 100.0 40 .................................... TTTCTATTGTTTCATATGTTCCTTCTTCTAATTCGTTTAT 172076 36 100.0 47 .................................... TATTAGTATTCAAATATCATTTCCGCCATATATGGTTATGACAAGAA 172159 36 100.0 41 .................................... ATTGATTTTTAATTGTAATATGTAGAACAATCTTTATTCTG 172236 36 100.0 41 .................................... TCTTCGATGACGGGTGGATATTCTATCCCGTCATCTTCTTC 172313 36 100.0 40 .................................... TTTCAGCTATAAAAGTAAGATATTTTTCAATTCCTGAATC 172389 36 100.0 40 .................................... ATGTCAAAGATGTAAGCTTTCACATTTATTGCACCTCCTT 172465 36 100.0 41 .................................... ACTATGAGAGCCAAGGAGTCTTGGAGGTAATGCTTTGACCC 172542 36 100.0 42 .................................... TCCTGTCGAGCATAGGCTAAAAACTCCTCCCTATTGGCTTCT 172620 36 100.0 41 .................................... CCTATAAATCAACATTTAATAAATAACCTCCTTTATCATTT 172697 36 100.0 41 .................................... TGTTTTTCTAATTCATCTCTTACATCTAATGCTCTGTTAGG 172774 36 100.0 41 .................................... AGGCTCTTAAGACAGAAACCTGCCTTTGGAATTTTTTGCAT 172851 36 100.0 41 .................................... CATATTAATTACCTCCTTAGTATTTTTTTTTTAATTCAATA 172928 36 100.0 41 .................................... GCTGCTTTTGTTTTTGCATTACATATCAGATCTGGTATTCT 173005 36 100.0 41 .................................... ACAAATTCTAAATAATCATAGTATGATTCCATACCAAGAAG 173082 36 100.0 41 .................................... AAAATAATCAAATGCTCCTTCTGCAATCAAAAAATATTCTT 173159 36 94.4 41 ..........C...A..................... CAAGTTCGTCTGCTTCTGGTGATAAATCGATTCTGTCTATA 173236 36 94.4 40 ..........C...A..................... TTGTTACTGCACCGACGTCCATGCCTGCAACATTCCCCGA 173312 36 94.4 40 ..........C...A..................... TTCATTTCCTCGATTTTTTCTTCCTTCATTGATTCAGGTA 173388 36 97.2 43 T................................... GAAACTATGATTGTTTGAAAACATAGTGTTTAAACTTTTCATC 173467 36 72.2 0 ...TA.T..C...CA......A.......C.A...A | T [173473] ========== ====== ====== ====== ==================================== =============================================== ================== 37 36 98.7 41 ATCCGAATATAACTGCTCTCTGAAAGAGATAGAAAC # Left flank : GAGAATGGGGGATGAAAACAATAATGGAAGCATATGAGATTATTACAATGTACAAGGGAATATAAGCAATAATAAAGAATGGATAAAAAAAACAGCAATATTCGGAAATAAGAAATTTATAAATAAACTAAATATAAAAGAAAAATAAAAGAAAGATATTTGCAAAAATAACAAAACTATAAAATACGCATAAATAAACTAAAACATATCTATGAGGTTCGCAGAGGTTTATGATTTTGTAATACTTTTCAAAAACCACTTGACAAAAGGATTTTAGAATGTTATAATAAAAATAGTTCGTATACGGACCTAAATCCAAAAACACAAAATCTCTGAAAGCAGCTTAAACAAAAGAAAACTGAAAAACAGGTACGAATATAGATGAAAAGCGGATTACAGAGATTTTATTCGAAAAAATGCTGAAAATTTCAAAATTAAAAAACAGGTTCGAAAAATCACCTTCTAAAAAACGCTAATAATAACCACTCTAGAAACCAGCT # Right flank : ACTCCTGCATTTTTCAATGCAGGAGTTTTTGTGTATGGTATAATAACACCATGGGGGTGAAAAAATGAAGGAATTAAAAAGTCTTCCTCTGGGAGAAAGCAACTTTAAAACCATAATGGAAAACAATATGTATTTCATAGATAAAAGTATGCTCATAAAGGATATATTATCAGCTGGAAGAGTAATATTAATCACTCGACCAAGGAGATTTGGAAAAACATTAAATATGAGCATGTTAGAACATTTCTTTTCAATGAAAAAAAACAGTGAGAGTTTATTTAAAGATTTAAAAATCTGGAATGAAAAGGAAATATTAGAAAAGTATTTAAATAAATATCCTGTTATATTTATTAGTTTTCAGGGATCAGGTCGAAATTTGCAATTATCCTCCTAAAATTCGTAAAACTAATTATTTATATTATATTAAATTATCAGTGTCGAGAATAAATTTTATTATGATATAATTCAATTGATAATCTAGAGCGTCTGAAATAAAGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGAATATAACTGCTCTCTGAAAGAGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //