Array 1 24100-22930 **** Predicted by CRISPRDetect 2.4 *** >NZ_APTR01000127.1 Neisseria meningitidis 73696 gnm73696.contig.126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 24099 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 24033 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 23967 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 23901 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 23835 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 23769 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 23691 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 23625 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 23559 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 23493 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 23427 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 23361 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 23295 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 23229 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 23163 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 23097 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 23031 36 100.0 30 .................................... GCCCGCGCGTGACGGTCAAGCCCCATGTTA 22965 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 99.8 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //