Array 1 437-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWQ01000019.1 Chromobacterium subtsugae strain MWU2576 contig00019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 436 29 100.0 32 ............................. ACCGGCCCGACACCCGCAGCCCGGAGGCCGCG 375 29 100.0 32 ............................. GTCTGACCATCTTGCCGGTAATGTCGGCTAGG 314 29 100.0 32 ............................. ACCAGCCGGCCGGCCAGATCGCGGTAGCCCAG 253 29 100.0 32 ............................. CACATGGAGGTTGATAGCGCGGTCCGAGCTTA 192 29 100.0 32 ............................. TGTCCTGATCGATGTTGTGACGAACTTAAAGG 131 29 100.0 33 ............................. CACCACTGCGTCGCCGTAGCGCATCACCCCGAG 69 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GCGTGCGCGCGCTCCACCGCCTCGCGGATGTCCTTGACGCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGTATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACCGCCAGGCTCAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCGTGCATGCTTGCGGGATGGCGGCAGGCTATGGATCTGGGCGATTTGAGCGAAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTATCTTTAAAAATCAGTGGATTGAAAATGGT # Right flank : GTTCCTTTCGCCTACGATCAGCGCGGAGGAGATGTGTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 143112-142164 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWQ01000015.1 Chromobacterium subtsugae strain MWU2576 contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 143111 29 100.0 32 ............................. TGGCTTTTCATCGCTTTTCTCTCTCTCATAGC 143050 29 100.0 32 ............................. AGACTGGGGATCGCTGATGTAGGTCTGCAGCT 142989 29 100.0 32 ............................. GAACATCAGCCAATGCCAAATAGAGAAAGAGC 142928 29 100.0 32 ............................. CAGGCGCCGGAGGTGGCGTTCAACCTCGCCGC 142867 29 100.0 32 ............................. CGCTACGTAAAAACCACAGTCCGGTGATTCTC C [142852] 142805 29 100.0 32 ............................. CCCCGCGCAGTGGCGGGGCCGGAAATGGAAAC G,C [142787,142800] 142742 29 100.0 32 ............................. ATCAACCGGCTGCCGTTCGAGCAGCGCGCCGT 142681 29 100.0 33 ............................. TGGGCCATTCATATTCCTGGTCCGGATGACCTG 142619 29 100.0 32 ............................. CTATCGCACGCGCCTGGTGCGGTTGACCTGTC 142558 29 100.0 32 ............................. CGCCGCACGCCGTCGCCGTCTACGTCCTGGAC 142497 29 100.0 32 ............................. GACAGATTGCCGTAGCAAACATCCTCTTGACC 142436 29 100.0 32 ............................. CGCCCGGCGGGTTCGAGCTCGATGCCGATGCG 142375 29 100.0 32 ............................. CAGACTGCCAGCCTGGCGAAACCGGTCTGAGA 142314 29 100.0 32 ............................. AAAGACATCGAGCGTTTGGCTCAAACGGTGCT 142253 29 100.0 32 ............................. TCTTCCCATCCAACCAACAGATACGCGCCGGA 142192 29 82.8 0 ...................T..C.GT.G. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : TCGTCGTCGACT # Right flank : ACTAAAATTCGGCAACTTACGCTTTGCACTGCGTGTCCCGCTCTCCGCGTACCTTCTACCTACTGTTGCATCTCGCTTAGATATTGCGTCAGCCGCAGCGTCAGGCTGGCGCGGGCGGCGTTGGCTGGCCATACCGCGTACACCCCCAGAGCTTCCACCTGCCACTCGGGCTCGACTTCGCTCAGCCTGCCGGCTGCGATGTCGTCCGTCGCCAGGAAGGCCGGCGGGGTGGCCAGGCCGCAGCCGGCGATGGCCAGCTGGCAGACGGCATCCAGGCTGTTGGCGCGGATGGCTGGCTGGATGGAGAAGCTGTGCGCCTCGCCGGCCGCGTCTAGCAGGGTTTTGCGGTCGGGCCGCATGCGTATGCCCAGCCAGGGCCAGTCGGCCAGCTCTTGCGGGTGGCGGGGCGCGGGGCGCGCCGACAGCAAGGCGGGCGCGGCCACCAGCAGGCGCGGCATGTCGAACAGGCGGCGCGATTTTAGCGCGCTGTCCGGCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 343-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWQ01000045.1 Chromobacterium subtsugae strain MWU2576 contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 342 29 100.0 31 ............................. GCCCCTCGCCGGGGGCGTCGCCGGGGGTGCT 282 29 100.0 32 ............................. CCGCAGCCGCGATTGACAGCCTCATCGCCTGG 221 29 100.0 32 ............................. GCAGCATTCTTCATACACCTCCCTTGGCGGAC 160 29 100.0 32 ............................. GCGATGCAGCCGTATGAAATCGCCGTCCGCAC 99 29 100.0 32 ............................. CGTTACAGTAACGCTTTCTCGCCTATGCTTCG 38 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : TTTTCCAACGCCTACGCCGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGCTGCCGCAGCTACAATGCGCCGACCGCGCCTTCCGCCCGGTTCACCTGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTGAGCGCCAACTTCGGCGCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGCTGGAGCTGGCTGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGGGGCTGATGCGCGGCGATAATGCCGTTGTCGTTTTGCGGGCGCTGTGCCTGCGGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGATGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAATTTGGT # Right flank : GAGCCGGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5212-4693 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWQ01000045.1 Chromobacterium subtsugae strain MWU2576 contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5211 29 100.0 33 ............................. AGTTGCGGCGTTGTTGGGCTTGGGCCAGGCTCG 5149 29 100.0 32 ............................. ATAAACCGCGCTTCTGATGATTGCGGTCAGGT G [5132] 5087 29 100.0 32 ............................. GTGCCGATGCCGCGCATGCACTTCGCCATCAT 5026 29 100.0 32 ............................. CCGGCGATGTACTGGTTCTGCACGTCGAACCC 4965 29 100.0 32 ............................. GCCGTGGCGTCGCCGCCGGTTACCACCAGGGC 4904 29 100.0 32 ............................. GCGAGTGGTTTTCAGGCGAATGGAATGCAGGT 4843 29 100.0 32 ............................. TGGGGGTCCGGTGTCAGGCCGTAATAGGCGGC 4782 29 100.0 32 ............................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 4721 29 89.7 0 ..............C..........CT.. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.9 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : CGCGAGTGGGGATGAACCGTCCAGGTGGTTGATCCGAAAACAGTTGCCAA # Right flank : CCTGTATCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGTTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCATCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGAACCACCACGTCGAACTTGTCGTCCGCGCGGTATACGGCTTCGCTGCCGGCGCCGGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 481-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWQ01000043.1 Chromobacterium subtsugae strain MWU2576 contig00043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 480 29 100.0 32 ............................. CAGTCCGGGTTAGACGACGCAAACGCGCTGCG 419 29 100.0 32 ............................. CGCGGTGAAGGTCTTCCCGCCGCCGGACACGC 358 29 100.0 32 ............................. CATTCATCCTACCGCGTGAGCAATTACAGAAT 297 29 100.0 32 ............................. GCGACAGCCATATTACCTCCGACGGTCGTCCA 236 29 100.0 32 ............................. GTCTTGATCATGATCCGGATGTCGTTCGTGAT 175 29 100.0 32 ............................. GCGGCACCTACTACACTAGCGCAGGCGTTAGC 114 29 100.0 32 ............................. CTGAGCGACTTCCGGCCAGGTGGCATCTTTCG 53 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : GGACATCGAGACGATGCTGGACGCCGGCGGCCTGGACAAGCCAGAGGCGCAGGGCGTGGTGGATGCCGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTCGGCACTTACAACCGGAAAATCCGCGACTACCTGTGGCAACAGGTGGAGGAGGGGCTGGAAGAAGGCAATGCGGTGATGGCCTGGCAGGCCGTCACCGAGGCAGGCTTCGACTTCGTCACCCTAGGCGCCAACCGGCGGATGCCGGCCGAGTTCGACGGAGCCAAGCTGGTGTCTTTTTGGCCTCCACCCGGGGCGGATGGGGCTGGCGAATAGGATGTTGTCGGCTTGGACGGTAATGGGGAGTTGGGTTCTTTAAAAATCGGTAGATTTTTGAGTGGTGTTTTTGTTTTTAAAAATCAATTACTTGTAATTGGT # Right flank : GGCAGATCATCCCCATTTTTCACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10551-10217 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWQ01000043.1 Chromobacterium subtsugae strain MWU2576 contig00043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10550 29 100.0 32 ............................. CGATGGTCGAGTGGTTGGCTTTAACGGAACGC 10489 29 96.6 32 ............................T TCTCGTCTCCAAAATGGTAATGATCCCAGTAC 10428 29 100.0 32 ............................. TCTAACAGAGCAGTTACGCCAACGAAGCCAAA 10367 29 100.0 32 ............................. CCGAATCCGCCCAACTGCTGGCCCATGTAGCT 10306 29 96.6 32 ............................C GCTGGGCATGGGTTGCCCCGAGATCCGACGCG 10245 29 89.7 0 ........................GG..A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : AACCGCTGGGCACCATGCAGCCGTATTCCGGCATGA # Right flank : CGGCTTGCAAACGTGATGTGCGGCTTGTTTTTCTGGATGGAATGTCTCGGCTTGTGCCTGCCTGGCAAAATGCCGATAATGATTGAGCAAATTGCCTGATTGGAGATTGCCATGCCCGCACGCGCCGCATTCCGGCCCGACCCCGTTCTCATCCGCCGCGCCACGGTCAGGGAGGGAGAGCGCCGCTCCCGCCAGTCCGACTTGCTGGGCGCGCCGGTGAGCAGCGATTACGACATCGTGAAAGAGGTAGCCAAGGGCTTGGATCCCGGCGTGATCACTCGCCTGACCGATGAGGGGCTGACCCGGCGCGAGCTGGAGTTCGTCATTCCGCCGCGTACGCTGACCCACCGCATCAAAAACGGCGAACGCCTGAGCACCGACGAATCCGAACGCAGCGTGCGGCTGGTCAACCTGCTGCTGCAGGCCGAGCAGCTGCTGGGCGGCAAGGAGGCGGCAACCGCCTGGCTGCGCCAGCCATTGCGCCGTTTCGATGGCCGCAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //