Array 1 861366-860153 **** Predicted by CRISPRDetect 2.4 *** >NC_009943.1 Desulfococcus oleovorans Hxd3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 861365 35 100.0 41 ................................... TAAAATACATTAGAGAGTATTTAGGGAAGGAAGGATATAAA 861289 35 100.0 37 ................................... CCACACCAGCAGACCTTATCGCCTACCTCAAAGCTCT 861217 35 100.0 38 ................................... TGAATCGCAGTAAGGTTATATGACAGGTAATCGGCAAT 861144 35 100.0 42 ................................... AAAAAATAGTTCGTAGTCTGATCTTTTCTTAATATTTTCCCA 861067 35 100.0 38 ................................... GTATGCAACACAGGCCTCTTGAAATAAATCCTGGTAAG 860994 35 100.0 34 ................................... AAATCTTTTGTGTTCAGTACTTCGTGGAAAGTCC 860925 35 100.0 38 ................................... TTTTCTTACCAATTTATATTCAACACCATCGATAACCA 860852 35 100.0 40 ................................... GAACGTATGATGACGTTCTGTCCCTCATGAATGGGAAATC 860777 35 100.0 39 ................................... TGGTGAACGAGGTCTTCTGAATCTGAATCGGCTGACCGT 860703 35 100.0 39 ................................... GTCATGTCTCAAACCTCCATTTTTATTGATTAATAAAAA 860629 35 100.0 39 ................................... CTCAGCCTCAGCTGCCTTGGCCATCTTTTCTTCTAACTG 860555 35 100.0 40 ................................... TTGGCCTTTGCAGCCTTCATTTCCGCGTTGTTAGTGTCGC 860480 35 100.0 39 ................................... TTGGGAATCTCAGCATAATTACTTGATGTTGTAGTCATG 860406 35 100.0 34 ................................... CCGGCCAGGACGGTTGTGAATGTTCCGCCAAAAC 860337 35 100.0 39 ................................... CTTGACCCTTCACCGTAGCTGTTGGCGATACCGTAAATC 860263 35 97.1 41 ...............................G... CCGGGGGTGCCGCACTGGGGTGCGGCGCTCCCGGCGTGGCG 860187 35 77.1 0 ...A...A......AT.T.....AT........G. | ========== ====== ====== ====== =================================== ========================================== ================== 17 35 98.5 39 GAAGGAAGAGACCCGCTGTTAGAGGGGATTGCGAC # Left flank : GATGGGCGACGACCTGGGTCTTCAGTTTTATGACCAAAAGGACTCGTTTCTAAAAATACAGGATTCCCGGAACCACTCGTTTCTGGCCCACGGATTCCGGTCGGCCAGGGAAGCGGCGTACATGTCCCTGCGGGATTTTATTGTGTCGTTAAACATCTTTCAGGTCTCGGACGTGCCCCGGTTTCCGGTCGTTGTTTTTTGATTACCGGAAATACCGGAAAGCAGGGAGACAACCCGGTGCGGAAAAACGATAAAAAACCACAATGCGCCAACCCAGGGCCGGGAAAGGAATAAAGATCCAACTAGCTGAATTTGTTTTGAAAACGAAAGATCCCGGCCAGGAGGTCGGCGGAAAATAAAAATAGTAAACGATTCTGAAGTGTTACAACATCACAACCCCATAAAAGGAGGCGTAAAAAGATGAAAGAAAAGGAAACCGGCAGCGGTCCGCGGAAAACCCGCTGGAGCCCGTTGTTTTTATTGCCGATAAAAAGGCCGCG # Right flank : CTGAGCAGGGAGAAAATATTCCCGGCCCTACCTCCCCCCAAAACGCCCCTGCCTCTTCCTGGCAACGTTGCCGTTGTTGCGGCCATTGGCTTTGCCTCCTAAGATGGTGTCAAAAGGAGGCGCACAATTTATAACCTGAAAAAGCAGGAGGTTTTATGCCGCGACGTGTTTCACCGCCGGTCAACGAACTCGACAGCCTGCCTCACCCACTGACTTCGGGCGAACGGCGGGTGTTTGATTTTTTTAACGCCCGGCTTGCGCCCGAATGGGAAATCTACGTTCAACCCCACTTAAACGGATTGCGGCCCGACTTTGTGCTGCTGCATCCCCGGATCGGGGTCGCCGTGTTCGAGGTAAAAGACTGGAGCCTGAATGACGCGGCCTACCAGGTCCAAAAACGGGAGGACGGCACGCCCGTGCTGATGGTAAACGACCATGGAGAGTGGCGCGCCATTGAACAGGCAAACCCGGTTGAAAAAATTCTTCACTACAAGCAGGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGGAAGAGACCCGCTGTTAGAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 3590108-3592577 **** Predicted by CRISPRDetect 2.4 *** >NC_009943.1 Desulfococcus oleovorans Hxd3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3590108 29 100.0 32 ............................. CAACACCGTTTTTACAAGCGCCTGAATTTTGT 3590169 29 100.0 32 ............................. CCCTTCCTTCATCAGCTCCACTTCTGTTTTTA 3590230 29 100.0 32 ............................. CGGTAACGCTATAAGTGATTAAATCGTTAGTA 3590291 29 100.0 32 ............................. ACAACATGATGATACTGCACCCCCTGACTCTT 3590352 29 100.0 32 ............................. CTGACCGGAGAACTGGAACTGGGCGAAGCAAC 3590413 29 100.0 32 ............................. GAAGATGCTGACCGCGGCGTTCTTTTCTGCCA 3590474 29 100.0 32 ............................. GACACGGCTTCTGATTGGCTGACTTGGCTGCC 3590535 29 100.0 32 ............................. TATTCGTAATTCCGCGCGATATCGGCGGAGGC 3590596 29 100.0 32 ............................. CGAACGAGGGACAGCGCGAATTTCATATTCTA 3590657 29 100.0 32 ............................. GGTTCCAGAGGGATTATTTTTTTCACCAGATA 3590718 29 100.0 32 ............................. CGGGTAAACGAAAAAACAGTTAAAACAGAAAT 3590779 29 100.0 32 ............................. GGATATGAAAATATTAAAAGTTTTGTATGGGA 3590840 29 100.0 32 ............................. CCACGTTTTCAACCTTTACGACACCGGTTTTG 3590901 29 100.0 32 ............................. CGGCGGATGACCAGTGTTCCACGGCCAGATAC 3590962 29 100.0 32 ............................. TATAGCGGCGGTACAAACCCAGATAGGCGTTA 3591023 29 100.0 32 ............................. TATCGCGGATACCGTGGAGGATGGATCGGATC 3591084 29 100.0 32 ............................. TGATAATCACAAAGCAGACTGACCGGGCCATC 3591145 29 100.0 32 ............................. AATCCACCATGGCCTCGTCTTCCTCCCGCAGG 3591206 29 100.0 32 ............................. CTGTCCAGGTGTATCTCGATGAGGTGCGGGCG 3591267 29 100.0 32 ............................. CCCTCCGTCCAGAGCATGACGGCGGACCAGAT 3591328 29 100.0 32 ............................. GTATTCGGAGGCGGCTTTGTCGGAACCGAACT 3591389 29 100.0 32 ............................. TTATAGCCGGGAGCAGCGGCCCCCATCATAAC 3591450 29 100.0 32 ............................. CAAACATAACCAGATCCCGGCCGAGGCGTTTG 3591511 29 100.0 32 ............................. CCCTGGGAAAAGATTATGCGTCGGCGGCCGAG 3591572 29 100.0 32 ............................. GAATAAGGAAAAACCGGTTTTGGTTTTCGATC 3591633 29 100.0 32 ............................. CCGGGGCCAGTAATCCAGCAAACATCATTTAT 3591694 29 100.0 32 ............................. GCTCGGTCAATACCCGGGCGGCTGTCGTTCTT 3591755 29 100.0 32 ............................. GTGGCCTCTGGCGTGTCACCAAGGGTGCACGC 3591816 29 100.0 32 ............................. CCTGAGTCATATATTCGGTGGCTTTTCGCAGG 3591877 29 100.0 32 ............................. GTGTTTATTTTATTTAAAATTTCTGTCATTTT 3591938 29 100.0 32 ............................. TTTGCCGTTGGGTTTGCCACCTGTCAGAGAAA 3591999 29 100.0 32 ............................. CATATCAGGTTGCTGTCGAGGTCGTTGATGGT 3592060 29 100.0 32 ............................. AGAAAAGAACCTTATTTTTAAATATTTTGTTT 3592121 29 100.0 32 ............................. AGAAAAGAACCTTATTTTTAAATATTTTGTTT 3592182 29 100.0 32 ............................. CTCATGATCGCCGTGCGGGCCGCGCCGTAGCT 3592243 29 100.0 32 ............................. GGAAATGAAGAACAGAAAACGGAACCCCCGGA 3592304 29 100.0 32 ............................. CGACCGACGACGTGGATCCACTGGCCACGGAT 3592365 29 100.0 32 ............................. TACGGGACGCTCAACTCCCAGGATGCCATCGG 3592426 29 96.6 32 ..............C.............. GGCGACGGCCCGAAAACCGCCGCCCTGCAGTG 3592487 29 100.0 32 ............................. GCCCCGGGTTGGCCGCCGCTGAGGATCTGGCG 3592548 28 79.3 0 ..............C...A.....G.TT- | CG [3592570] Deletion [3592576] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.4 32 ATGTTCCCCACACGTGTGGGGATGAACCG # Left flank : TTAAGCCGCCTCCACCCCCTGAAGATGCCCAGCCTCCGGCAATACCGGAGCCTGAATCAATCGGAGACCAGGGTCACAGGAGCGCATAGTATGAGCATGCTGGTGGTTGTCACGGAAGCTGTTCCTCCACGTCTGCGCGGCAGACTCGCTGTGTGGCTGCTTGAAATTCGGGCAGGTGTTTATGTGGGTAATGTCTCACGACGCATCCGGGAGATGATTTGGGAACAGATCGCAGCCCTGGCTGAGGACGGCAATGTGGCAATGGCATGGGCGACGCCCAATGAATCAGGATTTGATTTTCAGACCTATGGTAAAAATCGCCGGATACCTATCAACTATGATGGCCTCCGGCTGGTTTCATTTTTGCCGCCAGACCAAGGCACGAATGAAACGACAACTGCTCTTTGACAACCAGATTAAATTGGGGCAACAAGGCCGAAATGACCGGTAGAAAAAACAAACTGCAAAAATACTTCTAAAAACAAAAAGTTCGAGGAAGT # Right flank : TGAAACGGTGAAGAGTTTATGGCTCTATGGTCGGCAGACGATATCGGCCAACTCATTACGCAGTATGCGCCGGCATTATGGAAGGGAATGACCCGTGCGATTGTACGGGCACTGGGAGGAGCGGGTTAGTCGCCCAGAAACAACGCCAGGACGCCGGCCAGAATCAGGGGGGTGACGACTTTGCGGTCGTTTTCAATGGTGGCACGGCCCAGCTCAACCGCCATAATGGCGACAAGGCCAACGGCGATAAAAAAGGCCACAAACCCGACAATGAAAAGCGTGCCTATTAAGAAATCCATGAATACAGATTATATAGCGCCGCCGGTGATGTCAAGTGGAGTCGATATTTACACTAATTGACCGCCGCGTGGAAATGAACCGTGAAAACTCCTTGAAAAGGGGGTACGAATGAGGCAGCATTTGAGCATGAATTCGGTTACTCCACAGCAGGACAAATCCAGCAACACCTCCTCAAATGCGGAAAAGGCCGAGAAAGCATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCACACGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //