Array 1 52516-53519 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVR01000001.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2899 NODE_1_length_321378_cov_5.27825, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52516 29 100.0 32 ............................. ACGACGTTGCCCTGCATCCCGCGCAGGTTCGA 52577 29 100.0 32 ............................. TCAGGCGTCAGCATTATCCAGTTGTTGCTCGC 52638 29 100.0 32 ............................. GAGAACACCATTGCAGCACTCCCCAGCCAGAA 52699 29 100.0 32 ............................. TTCTCGCGGTAATACTTGACAGACAACATAAC 52760 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 52821 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 52882 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 52943 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 53004 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 53065 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 53126 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 53187 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 53248 29 96.6 32 ............T................ ATGCGCGTAACGGTCATTATGTTAAATAGAAC 53309 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 53370 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 53431 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 53492 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70160-72081 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVR01000001.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2899 NODE_1_length_321378_cov_5.27825, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70160 29 100.0 32 ............................. GCGTACAACTGGGCGGCGGGCGAGATTGGCGA 70221 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 70282 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 70344 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 70405 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 70466 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 70527 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 70588 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 70649 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 70710 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 70771 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 70832 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 70893 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 70954 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 71015 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 71076 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 71137 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 71198 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 71259 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 71320 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 71381 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 71442 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 71503 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 71564 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 71625 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 71686 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 71747 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 71808 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 71869 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 71930 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 71991 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 72052 29 93.1 0 A...........T................ | A [72078] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //