Array 1 245833-243668 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCQG01000011.1 Salmonella enterica strain ARS-CC938 NODE_1_length_685435_cov_132.512_ID_12891, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 245832 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 245771 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 245710 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 245649 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 245588 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 245527 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 245466 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 245405 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 245344 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 245283 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 245222 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 245161 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 245100 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 245039 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 244978 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 244917 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 244856 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 244795 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 244734 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 244673 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 244612 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 244551 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 244490 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 244429 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 244368 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 244307 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 244246 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 244185 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 244124 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 244063 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 244002 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 243941 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 243880 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 243819 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 243758 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 243697 29 100.0 0 ............................. | A [243670] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265751-263465 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCQG01000011.1 Salmonella enterica strain ARS-CC938 NODE_1_length_685435_cov_132.512_ID_12891, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 265750 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 265689 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 265628 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 265567 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 265505 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 265444 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 265383 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 265322 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 265261 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 265200 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 265139 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 265078 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 265017 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 264956 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 264895 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 264834 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 264773 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 264712 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 264651 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 264590 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 264529 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 264468 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 264407 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 264346 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 264285 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 264224 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 264163 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 264102 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 264041 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 263980 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 263919 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 263858 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 263797 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 263736 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 263675 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 263614 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 263553 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 263492 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //