Array 1 112507-117682 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035730.1 Sulfolobus sp. S-194 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 112507 24 100.0 41 ........................ CTTCTATCCATCCTAAAGGACCTGGAGGATTAGATACTGAC 112572 24 100.0 41 ........................ AAAAATTACGAGATTATTATAATTGGGGTGAGCTAAATGGA 112637 24 100.0 42 ........................ ACCTACGTAGTACGTCATGTTTTTTCACTATAAAAAACTTGT 112703 24 100.0 40 ........................ TTTTATCAAAATCGTATCTTATAAGACTCTTCGGAGATGA 112767 24 100.0 41 ........................ TGTAACCTTGAACTTCTTAGCGACTTGATCAATTTCACTGA 112832 24 100.0 37 ........................ TTATAAAAGATTAACGGCAAGCCTCGCCCTTCAGGGC 112893 24 100.0 41 ........................ AAATTATGTAGAAATAAGTGGCAACATTATAAGTGCTTTAA 112958 24 100.0 44 ........................ GCACCAGAAGGTCCAACTATTAATACGTGTACTCTGGATATTCC 113026 24 100.0 45 ........................ CGAGTATAAGGGGCATAGCCCCTTAACCCCATCTTACTACTTTAG 113095 24 100.0 42 ........................ CCAGTACGCGTAATCGAGTAACTCATTTATGATAGTGTAGAC 113161 24 100.0 41 ........................ CTCTTTCATGAACGGAATGAATTATACAGTTTCTGTTTGTT 113226 24 100.0 43 ........................ TTAATTCACAGGCTTTCAGACAAAAACAAGTTTGTAGTAGCTG 113293 24 100.0 40 ........................ AGGAGCGATTGGACTAAGTTAAAAAAATTTTTAACTTAAT 113357 24 100.0 42 ........................ ACGATAGCAACTAAAGGTGGTGCATGGGAAGAATACTATCCA 113423 24 100.0 42 ........................ TCTCACGATAAATTGTTACGAATGTGTAATATACTGGTGTTG 113489 24 100.0 40 ........................ TAAAACGATAGACGGTGAAGAGTATGTCGAGTTCTTGTAA 113553 24 100.0 40 ........................ TTATTTCCTTCAAGTGAGATATATCACATATGACTAAATA 113617 24 100.0 40 ........................ AGATATTGCTATATCCAAAATCCTACCACCTGATTGACTC 113681 24 100.0 39 ........................ AAATGTCGGATCAGGCGTTTGTCAAGATGCCCAGGGAAA 113744 24 100.0 40 ........................ GTTAAACTTAAGGGGCTTGAGCAAGATGTGATAGAGCTTT 113808 24 100.0 41 ........................ AGTTTACTAAAGCAAAATTGTAAAAAGGATTAATGATCCAG 113873 24 100.0 42 ........................ ACAAAAAGAAATCATTGTTCGATGAGCCCATTCTTTTTCAAA 113939 24 100.0 40 ........................ ATTTTAATTATTTTATGAACGTCTCGTCATTCAGAGAATT 114003 24 100.0 42 ........................ CTTCCATTAATTCAGAAACTTTTGGTGCTGGCTTTATTTTAA 114069 24 100.0 39 ........................ CCTCGAAGGTCATCTGCTTCTTAGCTACCGTCTCGACGA 114132 24 100.0 44 ........................ GACAGAGACCACAACGACGAGACAACTCGACAGAGGTCCGGAGA 114200 24 100.0 43 ........................ TGGATATTCGACACTCATCCGCCAGATTATATTCGTACAAAAG 114267 24 100.0 41 ........................ GCATTAAAGAACGCAACTCCTGTCTTTCCGTATCTACATAA 114332 24 100.0 44 ........................ GCAATCCCCGCACGTCGTGCCTTTGCCCACCTTAATAAGGTGGG 114400 24 100.0 40 ........................ TTAGAGATCTCTATAGGATTATTTACAAGCTGAGGACGGG 114464 24 100.0 42 ........................ TCAGAAAGAGAACCCCCGCAAAAGTTCTTAGAAACAACTTCA 114530 24 100.0 41 ........................ ATAGCTTTAGGACCTACTAACTGTAACTTCTAACTGAACCT 114595 24 100.0 41 ........................ AGTGTGTAGCAAAAGCTTTTTTATCGTTATCATCAATTACA 114660 24 100.0 45 ........................ TAGGGGAGATGACCCATACGGGGGCTGTCTGGGGCTCCGCCGGGG 114729 24 100.0 38 ........................ GTTCTAATACACGGCCAGTACTTAAAACAGCTCCTTTT 114791 24 100.0 39 ........................ TTACATCTGGTAGTTCATAAATCGTTCTGAATAACGATA 114854 24 100.0 45 ........................ TCTCTGTTAAGAACAGAATTTTCCCATCTGGTGCTTCTTCTTCTC 114923 24 100.0 42 ........................ CAGATGGTTGGTTACCCTTTAACCCGTAAGTCCTATCGAGTG 114989 24 100.0 40 ........................ ATGATAAGTGAGAAAGAGATAATACTGAAGTTGATAGCCA 115053 24 100.0 40 ........................ GGTCCGTGTGCTGGTGTGCAAGTACTAAATGCATCCCGAA 115117 24 100.0 48 ........................ TTCTATATACTTAAAAATAGGATTAACTAATGATAGGACGTCATCTTT 115189 24 100.0 42 ........................ CTAAGCATGTTTTCTAATAATGTGTTTGCTGTACTGTTTTTA 115255 24 100.0 40 ........................ TATCTCTCTTCAGATTCTTTATCCGAATATTTACTTCCGG 115319 24 100.0 41 ........................ TCTTCATAATGAGTAACATAAATGTAACTCCTTCTGAAAGT 115384 24 100.0 40 ........................ TTTATTCATAATAAGCAGCTTTAGGACCTGTGCTTTCTAA 115448 24 100.0 44 ........................ GAAAGTTTAGTTGTAAAAGACCCTAAGTACCTGGGCAAGTTTAT 115516 24 100.0 42 ........................ TCTCATCTACCTTTAGTTTATTGATTGCTTGAGAAACGGCCA 115582 24 100.0 41 ........................ CTTCTTAGTTTCTACATGGATAAATGAAATATAGGCCCTCT 115647 24 100.0 41 ........................ ACCCTTTCGTCCCAATCTGGAAATATATCGCTTGGATCTAC 115712 24 100.0 40 ........................ AAATATTAACGGATAAAGAAATTGAAGAGTTGAGAGATCA 115776 24 100.0 45 ........................ CCTTAGGGTCAGAAACACCCTTCAACATCTCAGCCAAACCCCTCT 115845 24 100.0 39 ........................ TCCCATGTGAAGAATACTTTTCTATGAGGTTATTCACAA 115908 24 100.0 40 ........................ AATAAATAGGCCTCAAGGTCTTCCAAGTTTCTGTTTCTGA 115972 24 100.0 42 ........................ ATTCAGGTTGCTTAGCTATTTTCGAGTTTATAACAAAATTTA 116038 24 100.0 42 ........................ GTTTTTTGAGGCTTAGGTTTAAGGAGTAAGTTTAGTAGGTCC 116104 24 100.0 41 ........................ AGCCCTCTCTTCCGTTCCCCCTTACTAGCTCAATAGCCGCA 116169 24 95.8 40 ........A............... TACATTAGGGAGATCCAATTCGCGGATTTCGAGGGCGCCG 116233 24 95.8 41 ........A............... CAACAGATAGACCTGATCAAAGACAAAATCATACGGGCTCC 116298 24 95.8 42 ........A............... AGCTTACTTAGCGGTATAGGTAATTTAATAGTATTTGCGCAA 116364 24 95.8 42 ........A............... TCTCCTCCCTGAGATAGGACCTCTACCGCCTTCAGGACCTCC 116430 24 95.8 41 ........A............... GCAACTCAGCAGTAGTAGTAAACATACTGACGGCTCCCCGC 116495 24 95.8 40 ........A............... CATTTATCAGGCCTTGGACGGCCTCGTAGATCTCGGCAAA 116559 24 95.8 41 ........A............... TTAACGCATATCGATGTGATTTGGCTACCGTTCGGAAGGTA 116624 24 95.8 40 ........A............... TTGAAGAGAATTTCAGAAATACTATTACAAGGGTGCATGA 116688 24 95.8 39 ........A............... TGGACTATTGTGCCGTTCGGCAATGTGTATGCTTCGCCT 116751 24 95.8 41 ........A............... AAAGAAAATTCCAATAAAATGATATTGATCTCAAGATCGAA 116816 24 95.8 42 ........A............... ATTGAGAGTGGCTCTAATAGAAGCCGTAAGAAGTGTCATTAC 116882 24 95.8 40 ........A............... CATTAAGAATCTTAATGTACTTGAATGCGCTAAGTTTGAA 116946 24 95.8 43 ........A............... CAGGAGCAGACAAGTATATTTTCCAGGGGACGCCACCCAATTT 117013 24 95.8 36 ........A............... CTTCTACGGACATGAGCATTTGTTGTTATTAGCAGA 117073 24 95.8 41 ........A............... ACCTATGAAGTTCTGTATACCCGTATTGGCTATAGCTCCCG 117138 24 95.8 41 ........A............... CTTGATGATACTTCTTAGCTATCTTTTTCAGCCAACTCATT 117203 24 95.8 43 ........A............... TTCTTTCTTTCCTCTAACCCTTTAACCTATTTCTTAATTTCAA 117270 24 95.8 40 ........A............... ACCTCTTCTTCTACATAATGAAATAGAGGTAAGCTATCTT 117334 24 95.8 42 ........A............... TTCTTTGGTGGTAAGGAGCTGGTTTCTCTCTGTAGGCGGTAA 117400 24 95.8 40 ........A............... AATATTCTACTACTATCTTAGCTACGAGGACATGGAAAAA 117464 24 95.8 39 ........A............... ACTGGGTGGGGAAAAACTAGGCTAGCAATCCATATAATG 117527 24 95.8 44 ........C............... TGTTTTTCTACAGTCACTTCTTTTCCGAAATTTTCTTGGTATGT 117595 24 95.8 40 ........C............... TGATGTCCTATTGCGTTTATACTGTGCTTTACAATAGTAC 117659 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================ ================== 80 24 98.8 41 CATAATCCTCAATGGAATTGAAAG # Left flank : TATTCAAAGCTTTTTAACGATTAGCATTTATACGACAGACTCTAGAATCACTGAATCTAATGAATTAAAAAGTGATTTCAGAGTATTAAATGAATATTCATAAAAAGAACTAAATACTACCAAACAAAAATAATAGGATAATGAATAAGTTAAAATCTTCTCTATAGAATTATCTCAGTTTTATCTACTAGACAGTGTATGCATGTTATTTTAGGTGTATTTTTAGCTTTATGAGATTGATAGAAGTAAAGATTATATCTTCTATGTTATTTTAGGTATATCTTTGTTTTTGTTCCCGTTTTTTCTCGGGATTTTCTTTCAATTTGTATTTGATTTTTTACAGTATCTTTATTGAGAATGTTTTATGTGTTTCTCTTTTTTGTATTCCCTATTTTTCTTAGGAATAAGAAGAATTCAGTAATGACAAATATGTAATAAATAGAAAAACTTATATAGTAGAAACAAAGAAAATAAGATAAATAGAAATATAAAAACAATCA # Right flank : GGATATTGCACAATTTACAAATCTAGGAATTTCTTCAAAACTAGTCTTGCGGATTTTCCTTTGAAGTAGTTTGCTAGGTATGATTATGAGTATCTTGGTGGACAGTTTACGGAGAGGCGTATGTGGTCTGGCATTACTTCTAAGGCTATTATTTCACAACCCAATTCCTCAGCGATTGACTTTAGCAACTCTTTAGTATATTCAGCTACTTCATTAACTAGCATGTCTTTATAGTATCTTGGTATTCATACAAAATGATAGTTGCATAAGTATTTTTACATGTCTCGTTGATTTGTATTCCACAGTATACTTTAGAGTATTCAGATATTTTTAAGCTACATCTCCGCCCCTAGAAGGGGCTAGGCTTAAACCTTCATTTTGTCAGTAAGTAATTTATCTTTCGTCATTATACTACATGTTAACTTGAATCAGAAATGGAGGAGTCCAGGATAACTAAATTATATACACTATATATTAACAAAAATTTTATATATTAACAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATAATCCTCAATGGAATTGAAAG # Alternate repeat : CATAATCCACAATGGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 2 140342-137412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035730.1 Sulfolobus sp. S-194 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 140341 24 100.0 43 ........................ ACAATTATTAATTTTAAATCTATCAAATCTCTTATCTTCTCCT 140274 24 100.0 40 ........................ CTTCATCAGAAAGAGCGTATGGTAACGTTATTCGCAAACA 140210 24 100.0 39 ........................ ATAAGCTTTTTAAAATACTCCTTTTTTGATGAAACTCTA 140147 24 100.0 44 ........................ TTTAAGATAGATCAGAGAACGGTAGCTATGGCTGTCTCGAATAA 140079 24 91.7 39 .........A..A........... ATTTTCTTCAATTCTTAATAATTCTTGTTCACATTCGTA 140016 24 100.0 38 ........................ TCATAAAGCCAGGCATTACGCGACCACACTAAAACTAT 139954 24 100.0 43 ........................ GAGATTTTCATTTTGTTTCTTCAAAGTGGGTGAAACGTTCTAC 139887 24 100.0 41 ........................ AAGAGAACTTTACGAATTCCTTAGAGACAGCTCAAATGAAA 139822 24 100.0 43 ........................ TTGAATTGTGCGTATGGCGTAAAAATAGGACCGTTATCTCCGT 139755 24 100.0 40 ........................ TATAATTTACTAAAGTTCTAGGTATAATAATGTCGTCTTT 139691 24 100.0 39 ........................ TCAACGTGAACTCCACCTGGTCTTTCACCGTCTTCTCTA 139628 24 100.0 43 ........................ GAGATTTTCATTTTGTTTCTTCAAAGTGGGTGAAACGTTCTAC 139561 24 100.0 41 ........................ AAGAGAACTTTACGAATTCCTTAGAGACAGCTCAAATGAAA 139496 24 100.0 43 ........................ TTGAATTGTGCGTATGGCGTAAAAATAGGACCGTTATCTCCGT 139429 24 100.0 40 ........................ TATAATTTACTAAAGTTCTAGGTATAATAATGTCGTCTTT 139365 24 100.0 39 ........................ TCAACGTGAACTCCACCTGGTCTTTCACCGTCTTCTCTA 139302 24 100.0 40 ........................ GGCGGCAAATACGTGTAGTTTCCTAAAGCGTATTGCCCGT 139238 24 100.0 39 ........................ ACTTTCTGACACTAATTCTCCAAATTGGTTTACAAATTG 139175 24 100.0 41 ........................ GCACTAACGCTAGGATTGGGACGTTTGAAGAGCCTACGTAT 139110 24 100.0 42 ........................ TATACATCTTCCACGCTATAATGGCTGGAACAACAATCAGCA 139044 24 100.0 44 ........................ TAGAATACTTTATTGTTATTGGCTCACTTAATACTGGGTTAGAT 138976 24 100.0 41 ........................ TAATCAGTATTTATTCCCTTTGGAATTTGAATATTCTGTAA 138911 24 100.0 40 ........................ ATCCGCCATCCATGTACATTACTTTCACTGACTTCACCAC 138847 24 100.0 39 ........................ CACAGAGTACGAACTGAAAATTGTGCGTGGAGTTCCTAC 138784 24 100.0 40 ........................ TCCTCTCTACCTCGTCCAGTTCCCTGCCCGCCACCTTCTT 138720 24 100.0 42 ........................ TGGGGGGAGACTTACATAGCAGCATTTGATGACGGCTCAAAT 138654 24 100.0 36 ........................ ATTAATAGAAGTTGAGCAAAGAGAGGAGAAAAGAGG 138594 24 100.0 39 ........................ TTTTTGCTTAAAATAATTTAAAAACTCTTGAAAAGATAA 138531 24 100.0 41 ........................ TATTCGCTTACTTTTTTGAACGTGTAGTACTGCTTAGAGGA 138466 24 100.0 41 ........................ TACCATCTCTGACTACCAGACGTGCTTCCTTCATTCTCCAG 138401 24 100.0 42 ........................ GAACAAAATGGTCTAATTTCTTTAGCCCAATTGTAATAAAGC 138335 24 100.0 43 ........................ ACTGATAGGAAATTACACGCTGGAAGATAACTATACGGTCGTA 138268 24 100.0 40 ........................ TAATTTGCTTTTTCAATAAAAACTTCATTCTTCTTGTTAA 138204 24 100.0 41 ........................ CAGAAAAGAGAAGACTTTACTACTCCAAGCACCTACGGGAT 138139 24 100.0 41 ........................ GACCTCAAAACCAAAGGGGGGCCTGATGAAAAGGCGGAAAA 138074 24 100.0 40 ........................ TATTTTGGAGAAAGCAGTTTAGGTCCCTTCTCGTCGAATA 138010 24 100.0 41 ........................ ATCCTTAGCCATCTTCCATATAATCCTCCTCAGATACTGAG 137945 24 100.0 43 ........................ ATATAAAGATAATACAATGCATACGCGAACGTCGCTGCATATC 137878 24 100.0 36 ........................ TTAAATAACTTCTTACCAAAAGATTTTATATTATCG 137818 24 100.0 39 ........................ ATCCTAAACGCTGAACTCCACCTCATTTCACAAAATAGG 137755 24 100.0 40 ........................ CTTTAAGTTTCTTCAAAGTAAAGCAGTCTCACCTTATGTT 137691 24 100.0 42 ........................ TTTTTACCAACTCCTTAGTATAGTTCCCCTTAAGTTCGTCTT 137625 24 100.0 43 ........................ TCTTCAATACCCTGTACTTCTTCTTATAATACTTCACTATCCT 137558 24 100.0 36 ........................ TTCCATTCTCCATTTATTTGCACTTTATCACAAATA 137498 24 100.0 39 ........................ TGTTCCATAGCGTTATGTTCAGGAAAGTGGGCGGGACGT 137435 24 95.8 0 ........C............... | ========== ====== ====== ====== ======================== ============================================ ================== 46 24 99.7 41 CATAATCCTCAATGGAATTGAAAG # Left flank : AAATAAGCTTTCAGATTGAGGATTTCAGAACCACGGTTGAGGGACTGAGCAGTGAACTTTTGAGGGTTTTAAGTACAGTAGTAAACAATCCTGGGATAAAACATGAAGTGATAGCAGAGATAACCGGGAAAAAACTTAAAACTACTATGAACGTCGTAGGGATATTGAAAAAGAAAAGGCTAGTCTATCAGAAGGGTAGAGGAGATGGGATTTATCCTACGAAACTAGGAATATTGATAAGTAAATTAAATCGAGAAAATGATAGAAAATAAGTGAAATATCTTTGTTTTTGTTCCCGTTTTTTCTCGGGATTTTCTTTCAATTTGTATTTGATTTTTTACAGTATCTTTATTGAGAATGTTTTATGTGTTTCTCTTTTTCAAATTCCCTATTTTTCTTAGGAATAAGAAGAATTCAGTAATGACAAATATGTAATAAACAGAAAAACTTATATAGTAGAAACAAAGAAAATAAGACAAATAGAAATATAAAAACAATCA # Right flank : CATATGGTAAAGCTAAAGTATTAAAATATTTCCTGAGGTCTAACAGCATTTATAGTAAAATCATAATAGCTAATGTTTATTTTATAGGATGATATTGTAGATATTTATACTATATTTCTTCTTATCGAGAACAAGTTTATCCGTAATAGATGAAAATCTTATACTATAAAAAACTTATTATTTAAAAACTATTTTAACGTAAGATTTTTTACGTGAAATGCTATCTGATAAGTAAGAGACCTTCTTACCATAAAACTGTATAATGAGATTTTCAGCACCACTTATCGAAAGTCTCTCATAATAGAACTTTATATGGTTAAAATGTTAGGCTGAACTTTACCTTTACGTAGTTAAGTTTATTAAAAGGGTCATCAACGTTAGGAATTATAATCTCGCTTCCATCAGTTCTCATAATATACCAATCTCCTATTTCCTTATACACTGGATTAATAATATCCGCAACTAAGCTTGGCCTGTTTGCTATGTTTTCTTGTCTGACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATAATCCTCAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 3 146059-150515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035730.1 Sulfolobus sp. S-194 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 146059 24 100.0 45 ........................ GGCGCTCTGGCTGTTTGGGTCGAGGAAGATGACTACGCCGTACTT 146128 24 100.0 38 ........................ TATTATATTGACCTTGATCAACCCGACAAAGATAGAGA 146190 24 100.0 43 ........................ ATAACAACATTGTAATTCGCAAAAATATTTTTCATATTCTTGA 146257 24 100.0 42 ........................ TTCCTTAGGAGGAAGATAGTATGCGGTTCTCCAGATTGTGTT 146323 24 100.0 42 ........................ ACTTCGAATAATGCTCCGTGTCATTCTGATTAACAGGGAACG 146389 24 100.0 41 ........................ AAAGAAGAACAGAACAAGAATGAGAAAACTGGGGAGTTTAA 146454 24 100.0 42 ........................ AAATCTCCAGCCAAATGATATACTACATTTATTGAGTACTCA 146520 24 100.0 44 ........................ CCTGGGGGGAGGAGACTTACATAACGACATTCGACGATGGCTCA 146588 24 100.0 40 ........................ TTTTCTCTTAGCGTTAGTGTTCCCCTCTCCTTTTTTTTAA 146652 24 100.0 41 ........................ AAGACTTCCCGTAACGTCTGAGTAATGCAATATAATCTCAA 146717 24 100.0 44 ........................ AACACAAAAGTGCTTACGATCTACCTTGAGCCCCTATCCTCGGG 146785 24 100.0 41 ........................ TTTCTTTAATGTAAATGACAATAGATTGAGTTGTCTTTGCA 146850 24 100.0 39 ........................ TCCATTTTCCTTCTACTCCTTGTAACTCGCCTCTAAAAA 146913 24 100.0 40 ........................ AGATAGCTCAGGAACTGACCGACGAATGGTAATGATTCAC 146977 24 100.0 40 ........................ TCGACGGTTGCGGTATCGATGCTAATTGTGTTGAATACGA 147041 24 100.0 41 ........................ CTCACACGGTTAGTAGAAGAAATAATCACAGATAATAAAAA 147106 24 100.0 40 ........................ AAGAAAGTGTTTAACTGAATGAATTTGCTAGAAATAATTT 147170 24 100.0 39 ........................ ACAGAGCTTGCATACATATGCCTTCATTTCCCGCTCACC 147233 24 100.0 43 ........................ GACGAGGACACTGTTACTAGACCAATGTCAATCAAAATAACAC 147300 24 100.0 40 ........................ ACTTACATTACTCAGCAGGGTGCTTACATAAACCCCTTCA 147364 24 100.0 44 ........................ GGTGGGTATAGTCCGAAACTCCTAAGAATGCTCCTAGCATATTT 147432 24 100.0 40 ........................ GTATCGAACACAATTAATATTACAGTAAAAGCACAAATCC 147496 24 100.0 39 ........................ ATGTATTGCATCCCTTAGCTCTGGAAATGCGTCTGTCCA 147559 24 100.0 38 ........................ TTTTATATACCCCTCAATCGTCGCTTTATTTAATACAA 147621 24 100.0 40 ........................ TTACTACAAACGGCGGAAATTATGCACCACCACTTCTGGA 147685 24 100.0 44 ........................ CTTCCTCCTCATCTTCATCGTAATAGTAAAATGGGTCGTCACAA 147753 24 100.0 39 ........................ TTTTCTTCTTGTACGCTTTACGTTTCTCATTTGTTACAA 147816 24 100.0 43 ........................ TTGCCTTTAGTGTTTGTAATCTCGACTCTATGGACTCTAAGAT 147883 24 100.0 38 ........................ TATTGTATTTATCCATGAGCTTTAACGCTTCATCGTAA 147945 24 100.0 44 ........................ GTTCCAGTACGGCTCAGTCTCCTACACGATAAACGGCTATACGC 148013 24 100.0 40 ........................ GAAGAAAATCCATTCGCTGAGGCATTAAAATATCTATCTA 148077 24 100.0 42 ........................ TTCTACTGTCCCCGACTGCACACCTAGACTTGTCAGCACCAT 148143 24 100.0 41 ........................ CCAGGGAGCGTTAGATTTATACACTACTACCCCATAATAAA 148208 24 100.0 38 ........................ ACATCTGGCACCCCATGTGAGTAGTGATAAGTTTTGAA 148270 24 100.0 44 ........................ AAGATACTTGCAGCGTATTTTGTATCGAGAGGAAAGGGAAATGT 148338 24 100.0 37 ........................ CAGGAAACCCTGGATTAATAGTCGGTGCGTTACTTGT 148399 24 100.0 42 ........................ TAATTCCGCTGTTTATCTGATTTAATATATCCTCTAGGGACG 148465 24 100.0 41 ........................ CTAACAATATTATATAATTCAACATCGTTTAGTGCTGCGCC 148530 24 100.0 43 ........................ TAAGATTATTTTTCTCCATTATTTGTGAAAATTTTTCTATCCA 148597 24 100.0 41 ........................ GAATAGAACTCTATACCTACCATAGTTCCTCCGTTAGAAGA 148662 24 100.0 44 ........................ AAGATTATACAGTACCAGCAGGATTTCAGTCAGGCTGGAGCTAC 148730 24 100.0 38 ........................ ATAATGTTTATTAACCCAAATAGAGTATTTAAACATTA 148792 24 100.0 43 ........................ CTCTTTCCCATGGCTGATACTGTGAAACCGTCCTAGTGTTTAC 148859 24 100.0 43 ........................ ATATATTACTGGAACGACGGGCAGAAGTTGCATATTCTATACG 148926 24 100.0 40 ........................ ATAGGTTTATCCATTTGTAACGTTATGTTTTCCGCTGGGA 148990 24 100.0 41 ........................ AAAGTAAATTCTATTTGGGCTTTCTTAACCCAGATGAGAAG 149055 24 100.0 41 ........................ CATCTTCACGCAAAGCTTCTCGTTTTTCCATTTTTTCACCC 149120 24 100.0 41 ........................ AAGAGATATCCTATTATTGAACCTATAAAAATCCCAGCTGC 149185 24 100.0 41 ........................ CCTCAGTTTTTTGTACTCATCAAGTTTCTTTTTGTACTCTT 149250 24 100.0 40 ........................ ACATTAAAAGTATCAATGCCTACATCACCCCAGGTAGTCT 149314 24 100.0 42 ........................ GATCTTCTTAGTTTTCAGTATTTGTTAGTAGTTGAGTGTGAA 149380 24 100.0 41 ........................ CTATTATAGCCTCTTTTCCATCATTACTTTTAACGCTAAAA 149445 24 100.0 40 ........................ TAAGATCGAAGCATTAGAATGACAAGATGGACAACAAGCC 149509 24 100.0 39 ........................ CCAGGGTAATGTCCAGCTACGAAAAAGAACGGGTTGTCT 149572 24 100.0 47 ........................ ATTGAGAAAATAAGGTTAATTAGAAAAAATGGGAAATTATATGCAAA 149643 24 100.0 39 ........................ TGTTTAAGACCATATAGGATACCCAAATTCCTAGCCTTA 149706 24 100.0 43 ........................ ATGTATGTCTATCTCGACCGTAGCCGGGTTTGCCACCTTATAG 149773 24 100.0 40 ........................ ATTATAACGTTTCATTCGAATAATGATAATAGACTAATAG 149837 24 100.0 44 ........................ TTTGAAATGTTCTTTCATATCTTTAACCATTTTTTCCATGTCCT 149905 24 100.0 43 ........................ ACAGTATGTCTATGGACTGGGCGTTTTTATTTCCGTATTTTTG 149972 24 100.0 43 ........................ TTCCCACTAAATCCAAATGATACAGAGAATTATTCAAAATGGG 150039 24 100.0 40 ........................ AACAGTTAGGCATAGAGTTAGCCAAAGAGAACATTCAGCC 150103 24 100.0 42 ........................ AGTATTTTAGTAACGTTATCATAGTATTGCTTAGTCAGTCTA 150169 24 100.0 42 ........................ TATTGCATATGATATTATCGTCCTTAATGTCTACTATTTTAT 150235 24 95.8 39 ........A............... CTTCATCACTTAATGCGTACGGCAACATCATCTTCATAC 150298 24 95.8 42 ........A............... AAGTGATGAAAATACGTTAAAGTGGTCAACGTTATCTTTGTT 150364 24 95.8 40 ........A............... GTACCTGTAGCTACTTTTATTCCGTTGCAACTATTCATTA 150428 24 100.0 40 ........................ GTATCGAACACAATTAATATTACAGTAAAAGCACAAATCC 150492 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 69 24 99.8 41 CATAATCCTCAATGGAATTGAAAG # Left flank : GATTAAAAGAAGTTATAAAAGTTTAAGAATCTGTAAAGTACAAATGAGAAAATCTTCATATATTTAGGATGTTTACGTAAAGTAAAGGCTTAGTTTCAATTTATGAGAAGAATCATCCACCCATAAAAGAGAATTTTGTATGTCGTATGATTTTTATCTATTCAAAAGTTTCGCTGCTAGTCAAGGAATTTGATTAGTTGAATTTAGTTCAAATTTAAACTAAAATTTTATACAAACAAAAATATAATCTAGGTTCAAATTCTATGTTATTTTAGGTATATCTTTGTTTTTGTTCCCGTTTTTTCTCGGGATTTTCTTTCAATTCGTATTTGATTTTTTACAGTATCTTTATTGAGAATGTTTTATGTGTTTCTCTTTTTCAAATTCCCTATTTTTCTTAGGAATAAGAAGAATTCAGTAATGACAAATATGTAATAAACAGAAAAACTTATATAGTAGAAACAAAGAAAATAAGATAAATAGAAATATAAAAACAATCA # Right flank : GACGAATAGATACCACTTTATTTGTGGGAAATCCTCATATACTGATATTTTCACAGATTCGAGTATCCTTCTCCGTAGTTTTTTCAGTAGTATGAAATATTCTATTCTGCAAGAATTATAAATACTAAATCATTCTATTTGATATATAAGCCAGTAAAAGAAATTAAGGTGTGATCATGACACTTTTTGCAAAGAGTTATACAATTCCTAAATCTGTTCTTTTCGTTTGATCGGAAAATTTTTCCATCAAAAAAATATATATAGGGGTATAATAAGATATAGGAATATGAGTGTTGAAAAAACAGATACGGAAGGAATAATACGCAGGGTTGCAAATCTTCTCGCCTCAGTTTTCATCTATAGCGAATCGCCGACATATGTGGACAGGTTTGCTAATGCACTATCAAAGGAGGCAGTTGCAAGAGTCATTTACGAGTCACAGAGGATAATCCAGATGGGAATTTCAAGCGGTGAAGTTAAGATGGGGAATGCGGAAATAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATAATCCTCAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 4 161797-156941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035730.1 Sulfolobus sp. S-194 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 161796 24 100.0 42 ........................ GACCTGGACTGGGATCCTGACTGACCTCCGCCTGGACGCCCG 161730 24 100.0 39 ........................ GAAGGGCCTGACGAAGGAGGCGATTAACCCGGCGTTGGC 161667 24 100.0 41 ........................ TATATTTAAAATATGTAAAATGTGAAATAGAATTTTTTCGA 161602 24 100.0 41 ........................ ACTATTATAACCATAACTACTCTTTTCTTTCCTTTAACTAA 161537 24 100.0 41 ........................ TTTATTTCAAAGCAATGGCTTTTTAATGTAATGGGACCGTT 161472 24 100.0 39 ........................ CCCCTTTCTTCCCTAGGTAAACTATTGATTTAGGTGTAA 161409 24 100.0 38 ........................ TTTGCTATCAGAATTAATGAAAAATATTACAAGTTGTA 161347 24 100.0 44 ........................ TATTGTTAACACTGATACAGTATTCGTTGTTATTGTTATTATAT 161279 24 100.0 44 ........................ TTTAAAATTATCACGTGGGTGTTTTTAAAGGCTGATAATTATCT 161211 24 100.0 40 ........................ TGTTGAGAAACTGTTACCCAATCGTGGGTTCTGTAGCCGA 161147 24 100.0 43 ........................ AAAAGTTCTCCTTAATAAACCTTAAGTAGGATTAAGGAATACG 161080 24 100.0 38 ........................ GCGACTGCGAGGCTGGAAGTTTTGGGAAGAAATGCTGG 161018 24 100.0 44 ........................ ACAACTTTTATCCATTCAGTAATTAATTTCCTGAATTTATTTTT 160950 24 100.0 43 ........................ TTTCTTTTACTTTTTCTACATTAGATTCAACAATATTTATTTT 160883 24 100.0 39 ........................ TTCTTAGCAACACCAGTAATTTACCAGTATGCAAATTGT 160820 24 100.0 46 ........................ TTTCCATATGCTTTTTCAATTTTTCTATCTCCTGCCGAATTGTAAA 160750 24 100.0 40 ........................ ATTCTTACATATAATAGGCTTATAACAAGGGCAATAATAG 160686 24 100.0 42 ........................ TTAAGCTTAGAAAAGCCAAGGCCACCCTTAATCTACCATTTT 160620 24 100.0 39 ........................ TGTCAGGTGTGTGAGGGGGGAGAAAACATATAATAATAA 160557 24 100.0 40 ........................ TGCTTGAAGAGATATGCAGCATATAGGACAAGGCTTTCTT 160493 24 100.0 39 ........................ ATTTCTTAAACCCATGATGTGTGCAACGACCTGCAGGGA 160430 24 100.0 40 ........................ TTGCAGCTGCTTTAATTAATTCTAAGTCAGCGTTAAGCAC 160366 24 100.0 38 ........................ CTGCTTATCTCCTATTCTTATTATTGAATAATCTTTGT 160304 24 100.0 44 ........................ AGTGGGATACAATCATCCCCTGGTGTAGTTATTTATTCTCCTAA 160236 24 100.0 40 ........................ AATACTTCGGCGTTTCCCCATCGCCTTACGGCGGTGTTGA 160172 24 100.0 41 ........................ ACCCTGTCCCATTCAATATTTCCTTCCTCATCTGCTATTCT 160107 24 100.0 41 ........................ ACTTTCCATAACGTTGGCTTCCTTCTGAATTTCTTCGATGA 160042 24 100.0 38 ........................ AACGGAAGGATTAGAACATCTCATCATAGAGGCAATAT 159980 24 100.0 38 ........................ ACCAAGAACGGTTATATTTGTGGCGAAGAGTTGTTAAA 159918 24 100.0 41 ........................ AATTGTTTGTCGTAAGTCATCTCAAACGGAAACACATTATT 159853 24 100.0 45 ........................ AGTGTTTGGATTAATTTTTCGCATTTATCGTCGCTGAGAATTTTA 159784 24 100.0 43 ........................ ACAAATGCTTACGATTTCGAACAACCTGTTTACAGTACGCTTT 159717 24 100.0 50 ........................ GAACAGTCTTCTCAGGTGTCAATTGTTTCTATTATTGTGATTACACTTTT 159643 24 100.0 41 ........................ ATTATCTCCGTTATCTGAAAGCATCTCGCTCCACGTCTTGT 159578 24 100.0 46 ........................ GAAAGAACGGTAAAAGTAGGGCTCTAAATTATGCCATGAAAGTAGC 159508 24 100.0 42 ........................ GACACCCCCTAAGGGGCGGGAAGGGACGCCCTATAATTTTGG 159442 24 100.0 44 ........................ ACGACAGCATTTAATGATGAACTAACATTATCATCAGAAGATGC 159374 24 100.0 42 ........................ ATTGAAAATATAAAATTGATTTACAAAAATAGCAAATTATAT 159308 24 100.0 42 ........................ CTTCGGGCATGACGAAGTAAACGGCCTTCTTTCCGCGCATCC 159242 24 100.0 39 ........................ TACTATATCCCAATTCCTTAGCCTTCTCATTGATGTACT 159179 24 100.0 41 ........................ AGTGTCTAGTCCAGGTAGCTATACTACCGTTGTTTCAGGAA 159114 24 100.0 40 ........................ TTTCCGCTAGTTATTAGCTCATCAATCTGTTTAGCTAACT 159050 24 100.0 42 ........................ AAAGATCTTCAGCAGGAGCAAGATCGACGATAAGGAACTATT 158984 24 100.0 41 ........................ TCCGACGACCTGGACCGGGACTCCTGGGACCTGACCCCAGG 158919 24 100.0 41 ........................ AACACTTCGGCAAAGTTGAAAAACACCGCATCTAACCCCAA 158854 24 100.0 41 ........................ ACATTCTTCATAGTTTCCAAATAATGTTACTTCCCCCTTAA 158789 24 100.0 40 ........................ TATACATAGTTAGGCTATTAAGGCTCTGAGGTGAGAAAAA 158725 24 100.0 38 ........................ TCAAATTACGTACAAATGTTGGCTGACGATGTCGCCGG 158663 24 100.0 44 ........................ TCATTTAGCACTGGTAGCGGTTTCAAGGAGCTTATAATTTTCCT 158595 24 100.0 40 ........................ TTATGGAGGAGTTCCCGGAACAGTGGGAAGAGTTAAAGAA 158531 24 100.0 48 ........................ CGTTACCACCATTGTACGTGGAGGACGCTGTAAACGCTGAGATAAAGA 158459 24 100.0 41 ........................ TAAATGATAAAGAGCGACTGAAAACGAGGCAAAAAAAACGT 158394 24 100.0 42 ........................ TGTAGTGCTTACACAATACAATCTTATCCTTTTCCCATCTGG 158328 24 100.0 42 ........................ GTATTAATGCTGCTTTTTGGTTATCATTCATCTTTTACACCA 158262 24 100.0 40 ........................ CTCGTAGCTCAGATAAATGCAAAATATATAAATATAAACG 158198 24 100.0 38 ........................ TTCTGATGCCTATTTTGCCCTTCTTCTCATCTCCGATG 158136 24 100.0 41 ........................ AGATTACACTTACGAAATCCTCAACTTACCTAAGCATATAT 158071 24 100.0 41 ........................ ATAAGCGATACTCCCTACTCTCTCGATACTCCCTACTCTCT 158006 24 100.0 42 ........................ AACCGAAGCTATTGTAACCCACCTTTCAGCAATAAGCAGCCT 157940 24 100.0 42 ........................ TTGGTAGAAATAGATGTCTGCCCAGCGTAGAGTGTTGTATAT 157874 24 100.0 40 ........................ TATTCGTTGGAAGAAGTATATGTAGCTATGATCACGTATT 157810 24 100.0 41 ........................ TAAAATAAAAACTAGTCTAGGCCTCACTCAGAAGATCGTTT 157745 24 100.0 44 ........................ TGGAGAGTTAGTGAGTAAGATAATAGCTGCTGATTATGAATTGT 157677 24 100.0 40 ........................ AGGTGCATATTTGTCGTAAATCTGTTGCAATTCTATGTCA 157613 24 100.0 42 ........................ TACACACTTCCTTTTACCCTGGGCCTAAGCTCTTATTACTAT 157547 24 100.0 42 ........................ CGAAATATACCCTTGAGCCACGGCTTTCTTCATCAAAAAAAT 157481 24 100.0 41 ........................ TTCACCTTCACGGCAATCCTTACTGAAAACAGTGCTGGTAA 157416 24 100.0 36 ........................ GTCCGTGCTGACATATACATATTTAGTATTAGTAGT 157356 24 100.0 40 ........................ AGTTTACTGATAAAAAATAAAATAACTTTAGTGGGCTAAG 157292 24 100.0 46 ........................ AGTATGGTTCATAACAGAAGCCGTAAAGAGTACACAAGAAAACTAT 157222 24 100.0 45 ........................ TTACTCGCAATGGTGATTTTGAAACCGCCAAAACCTATAAAAGTC 157153 24 100.0 39 ........................ ACACGAGATGTGTAATGATATAATAACAATTCCGCCTGA 157090 24 100.0 39 ........................ AGAACTTCTTTAATAGTAGCCAAATGGTTTCCATCAGAT 157027 24 100.0 39 ........................ ATTCATAACGCCAAGGCATCCTCATCTACATTGACATAC 156964 24 75.0 0 G........T..C.A.GC...... | ========== ====== ====== ====== ======================== ================================================== ================== 75 24 99.7 41 CATAATCCTCAATGGAATTGAAAG # Left flank : AGATTTACATTATTATTTTCTTTTTCTTTTACTAGAATATTTCTTTTAGATTAGTGCGGTTCAAGGGATGAAATTATATGCTTGTCTATCGCCGTAACTGATTACGGACTCCACAACAAGTCTGTTCAAGGGAAAAAGATATGCCAGAAAGAAGATAATATATAGAGAATTATCTCAGTTTTATCTACTAGACAGTGTATGCATGTTATTTTAGGTGTATTTTTAGCTTTATGAGATTGACAGAAGTAAATGTCATATCTTCTATGTTATTTTAGGTATATCTTTGTTTTTGTTCCCGTTTTTTCTCGGGATTTTCTTTCAATTTGTATTTGATTTTTTACAGTATCTTTATTGAGAATGTTTTATGTGTTTCTCTTTTTCAAATTCCCTATTTTTCTTAGGAATAAGAAGAATTCAGTAATGACAAATATGTAATAAACAGAAAAACTTATATAGTAGAAACAAAGAAAATAAGATAAATAGAAATATAAAAACAATCA # Right flank : TAATGCTCTCTTATAAAAAGTATCAATCTTGTAAAGTTGTTACGTCTCAGAGATCTCCGAGTACTTATTTTTCATCTTAAGAGCAATTTCCCCCAAACCAATTCCTCTACTCTTACCTATCCCTAAAAATGAAGCTACAGTTAAATATTTCCATACAGCTTTCTTAAGCTTCTTGTAAGGAATATCAAACTCCATCCAGCCGACAAAACCTCTCGAGGTTCTTAATCTTCCCTTATCATCATTTCCTATAACTACAGTTAAGGGTTTCAGCTTATACCCTACAACTCTAGATAAGCTATTGCTTAAAATTCCAAGCTTAAAGGCTTTTGACTCAAGCTCTATATTACTTGTATTTCCGTATAAAGCCCTATAAATCCTATAGGCGTAACTTACTACTAAACCGACAGAAGGAATTAAACTATACCCCGGATTGACATTCTTATATTTTTCTTTTAACGATGGGGGAAGAAGGACCTTTGACGAAAGGAGAGCAGGGGTTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATAATCCTCAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 5 176556-176333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035730.1 Sulfolobus sp. S-194 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 176555 24 100.0 40 ........................ CTTATCATCGTAGATCCTCCTTTATTCGTTGTAGTACGTT 176491 24 100.0 45 ........................ GGAATAACAATAAGATATAGTTTCTATTTCAAGTTTCATAACTAT 176422 24 95.8 42 ................A....... GACACACTTCTTTATTCTGGGTACAGTACACCTGCTGCAGCT 176356 24 91.7 0 ................A.....G. | ========== ====== ====== ====== ======================== ============================================= ================== 4 24 96.9 43 GATGAATCCTCAAAGGGATTGAAA # Left flank : TAATTAACTCAGTCAGACTCATCATTAATCTAGTTGTCCTCCACAGACTAAATGAAGATAAAATAGCCTTTAAAAACTGTTTATTATATCATCGTGTAATTCTTTACGTAAAAGCCCTAGTTTAAAAGTACTTTTATAAGGATTTTTGTTCCGAAAGATTGAACATAATTTGTTATATTTCATCATTTTTTGAAAGATATTTAACGTAATGATACTAATTTAGGTAAGGAGAAGTTAAAATTAACAATTCGTAATTTTCGTTTTTTACGAGTGATTTAAAAACGTAAATTGGGCAAAAGCGGTGCTACCACTTCGGTTCTAGCACCGAATAATTAACATTTATAAATTATACTTTTCATTCAATTCTTCACTTGAACAATGCGACCAAAAAAAGGGAAACAAAATACTAGGAAAAATGGTCGCAAGAAGAAATAATGTAAAAACAAAAACTTATAAAGGAGAAATACGTAAGAAAGAATAAGAAATATAAAAAACAAACA # Right flank : GTTTAAGTTGTAACCAAACATAGAATAGAACTTATCCTTTGTTAAAGTTATATATAGGTATTTGAGATGAGAGGGGTAGCTTTCTTTCCTATTCATTTTAAGGCTCTTCATAAATTTTAGCTAAATCAGTCTCATGTTGCTAACTGTACGATTAAATATATCAGTTCTTGATGGACGTAAGCTTATATAAGGGATAGTTTAGGTAAATTCCCTTACAATAAAAATCATATTATTTACTCATGAACTAATAAATATTTTTAATTTACTTCTTATTAGTATTTTATGTAAAAATCTTACGTTAGAATAGTTTTTAAACAAATACGATTTTATAGTATAATATTTCATCTAATGCTGATAAATTTGTTCTATTTGAGATGAAATATAGTATAAATATCTATGATATCTTTTGAAATAATTATTCAAGGCAAGGATTTTCCGATAAATGCTATTCCTATAAGTGCTATAAGTACTTGCTTTCATGCTTTTAGGCTCTTTCTCTC # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCTCAAAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 6 195182-199182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035730.1 Sulfolobus sp. S-194 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 195182 24 100.0 37 ........................ GATGAAGAGACTGAAGGGGAAGACTAATGAGAGTAAT 195243 24 100.0 36 ........................ ACGATAGAGTAGTCGGAGTAGCCCACAACGAAAAAG 195303 24 100.0 37 ........................ AAGATAGCTAAAGCCCTAGACTTGGAACCAGTAATAG 195364 24 100.0 37 ........................ AGGAATATTGATGCTATATGCAGCAGCTCAACTGCAT 195425 24 100.0 38 ........................ ATTATAAAGATAGGAGATAAGCAGTACAGGGTACTTAA 195487 24 100.0 38 ........................ TAAATACTTTCTGCACACTATGTAGAATGAAGAAAATG 195549 24 100.0 38 ........................ CTATATATCCAGGCTTTTATGATATTATTATAGTCCCT 195611 24 100.0 39 ........................ TGTAAAGTATAGTGGATTTAGTAATGTTGAAGAATGGAT 195674 24 100.0 34 ........................ ATCTATTTTTTTCTCCTTTCTTTTTGCAGCGTTT 195732 24 100.0 34 ........................ AAGAAGGACCGGAGGTCATACAGCCTGAACTCTT 195790 24 100.0 38 ........................ AGCAAACTACAGTACTGCAGCAGCATCTTTCTAAAGCA 195852 24 100.0 38 ........................ ATTACAAAATTACAAAAAATTGGAGGAATGGTTAAAAT 195914 24 100.0 34 ........................ GAAGGGGAGCAAGATCTTCTTTTTTTAATTTCCC 195972 24 100.0 36 ........................ GTAGTAGTCATCGTAGTCATCGCAAGTATAATAAAT 196032 24 100.0 37 ........................ ATCCCTGGAATACACTTTATATACCTCAACCTGACTT 196093 24 100.0 35 ........................ ATAAATTATCACAGGCGAACAAAAGCACAACAATA 196152 24 100.0 38 ........................ AGATATGAAGGTACTGTGCATGAGGCTTTAGTAGGGGT 196214 24 100.0 36 ........................ AGCTATCCATCCGTATCCTGGACCTCTAAAAAAACT 196274 24 100.0 35 ........................ CCAGCTAATATAACTCCTTCTCCAAGCCCTTCATT 196333 24 100.0 36 ........................ GTTATCGTTAGCTACATTCGGGCCATCAAAGAAATC 196393 24 100.0 37 ........................ GAAGATGTGCCTAAACAACCAACGGAAGAAGAGTTAA 196454 24 100.0 36 ........................ TTGGGGGCTCTCTCTTATAAATGTCTGAAAAGCATT 196514 24 100.0 34 ........................ AATTATATCCTCCAGGATCGACGATTGTCTCAAA 196572 24 100.0 37 ........................ AAAATATGAGATCAAAATCTAATATAACCGCCATTCT 196633 24 100.0 38 ........................ TTTCTCAGAGACGAAAAAAGTATTATATATTATTTCAA 196695 24 100.0 36 ........................ ACGCTAAGAGAAAAAAGGAAGGAGAAAAAAATAGAT 196755 24 100.0 37 ........................ GTCCTCTTCCATAACATATCTTAAATAGAGTCTCAAA 196816 24 100.0 34 ........................ TATGGTCCCTTGCACGAGCTGTAGTATGCCTACA 196874 24 100.0 36 ........................ ACCTAAGATTGGGAGTTCACTGACACTGGCAATCCT 196934 24 100.0 36 ........................ TCATTTTGCCATGTAATTGCAGCTGCTTGCAATGCT 196994 24 100.0 37 ........................ ATGGTGTTACAGAGGGAATCCTAACAAAGCTAGCTAT 197055 24 100.0 38 ........................ AGGTGATCGTTTTAGATTATAAGAATCTTGTCATAAAA 197117 24 100.0 35 ........................ ATTAATCATACTGTACCGAGAGCTATTGATATGAT 197176 24 100.0 38 ........................ AGAATTAACTTTTCCGTTAGGTTTCGATTTTTGTAATA 197238 24 100.0 37 ........................ AATACTAAGGGTGCTAAGAATGAGCAACAGCAAAAAT 197299 24 100.0 34 ........................ TTTTTTTAAAAAAGAATTCGATGAGTGTGCGGTA 197357 24 100.0 34 ........................ AAAGCGTACAGCGATTTCAGTGAGCAACTGAAAT 197415 24 100.0 38 ........................ ATTATATTTAAATTCATAAAAAATATTTTTCAATATTC 197477 24 100.0 35 ........................ TCTATGTCAGCGGGAATTACATGTTCTTTCCCACG 197536 24 100.0 35 ........................ AAGTGAAAAGCGTAGAATGAGCCTTTCTGACCTCT 197595 24 100.0 38 ........................ GGAATAGAGGTGGTAGAAATTACTACACAACTTATTAA 197657 24 100.0 37 ........................ TTCTACGTCCGATTTATAACAAAATCATGATTCCGCA 197718 24 100.0 36 ........................ CCTATCATATTCCCGTATGCTATCCTTTGCTTCAAT 197778 24 100.0 36 ........................ TTTCTTTCTTACGATCTCATTTGCTTCTATATTTAC 197838 24 100.0 35 ........................ ATGACTCCAGCTATAACTTGTGGTTCTTGAATCCA 197897 24 100.0 38 ........................ CTTAGCGTAAAGTTGGTAAGATATTGCACCTAATGAAA 197959 24 100.0 37 ........................ ATCATTATTGCGACAATATGTCATAACATTATATCTC 198020 24 100.0 35 ........................ TTTGAGTGTATCAAAGAAGTTATTGAATGCCCTAT 198079 24 100.0 39 ........................ AATGGAAGACCTTGTCTGTAAGCTACACATTGTATTGCT 198142 24 100.0 35 ........................ ATATGGAAAGTATACAGTCTTTTGTGCTATGACAA 198201 24 100.0 36 ........................ CATCAATTCTACTAAAGTGCTGGTGTCTACACTATA 198261 24 100.0 37 ........................ TTTTTGCTAGCATGATAGGGCAAGTGGATGCAGGTTC 198322 24 100.0 38 ........................ AAGAAAGAAAACGGGAAATGGGTATTCAAACGCCTGGC 198384 24 100.0 35 ........................ AATTAACATCTTTACCCTGCATCCACTGTAATAAC 198443 24 100.0 36 ........................ TTAACCACGTCAGATCGTCCTCATGAAATGACTCAT 198503 24 100.0 36 ........................ AATACAACAGCTCAACTACGCCTCAATCAATCCTGT 198563 24 100.0 38 ........................ TATATTAGGCAAACGTAGTTCAGTCTCAACAATAAATA 198625 24 100.0 35 ........................ TGTTGTTTTCTAAAGCCTCTTTTATTTTCCCGCAA 198684 24 100.0 37 ........................ GTAAGCGTAAGGAACCCTCCATTAGCAAACTTATTAT 198745 24 100.0 39 ........................ AAGAAATAGATAAAAAATTATCAAAATATAATAAAGAAA 198808 24 100.0 36 ........................ AAAGTATTGTGAACAAAAAAATATTGCACCAAGTAA 198868 24 100.0 37 ........................ TGTACAAATGATGTATATCTTTTTTCATCAGTTTTTA 198929 24 100.0 46 ........................ GGCTGTGGAGATGCCTATTCAACATCACAATATTTTATAGGCGGTG 198999 24 100.0 37 ........................ AGAAGTAAAAACATGCACAGGGTGCTAAGCTGCTATA 199060 24 100.0 37 ........................ TCCGCCGTGCTAACTCAATATGGTGTGACAGGCCCTA 199121 24 100.0 12 ........................ TTGATCTTGTTG Deletion [199165] 199157 24 79.2 0 ..CG.T....T...........C. | CG [199170] ========== ====== ====== ====== ======================== ============================================== ================== 67 24 99.7 36 GTTTTAGTTTCTTTTTGTTTTTAC # Left flank : CATTTTGGTGGTTACCATTTTATAAAGTAAGTCCCATAATCTGGTTGCCACAGTTCTAATGTAATTTTATTTCTATCTGCCGCTAACCTATGTTCGCTTTGTATCTCTACTCCCTCATGAGGCCCATCTAAGGTGACTACTAAAACTTTTTCCGCCTTCACGTTTTTTGGAACCCATGGTAGATTTATCGTAATCTTTGCATAATAGGTGGGTTGACCTATTGTGATCCCTTCCATACTGTAATTCATATTGTATCTTCTATAAAGCTCTTCCATAGTTGATGGAAAGTATTTTTCATCCCAAGTATAGAACCCGTATTTTATCAATTCCCCTACCTCTAACGGGGGATCAAATGTTACGCGGAATTTAATGAGCTTAGGATCTACCTCTTTTTCCCACTTACCTTCACCTCTTTTATTCTCATCCAGCAGATTTTTCCTAGTTATCTTATTAAACCTTATTACTCTGGAAAGATACGCCAATGATTAGGTGAGAAAAAT # Right flank : CTATTTATAAGGTTTACTCTATGTTCTGTATCCTAGAGGTTTGTCTTTGGTGTTGAAGGGTTTTTTAGGTGGTTTTAGGGTTATCCTAAAAGTTTTTATGTATGGGTGTTGAAGGTGGGATATTCCTAAAAATAAGGGGATTTTTTACGTTTAAAAACGTAGAAGACGTAAAACTTTACAGATAATTAACAATATATCAGATAGAAGTTTTTACTTTCTAGTGAAAATCTATAATTATTCTATTCTTTCTGACAGTATGAAAATTTTTTAAACTATTTATATATATTAACTATGATTAACTAATTGAGTGTGGAAAACAATTTTGTTAATTCAGTATAAATTATATAAATTTTTTCTTTTTGAGTAAAATAAATTGTACAAAGCTCCCGTAATACCATAACTAACCTACTTACACATCAAGACTCTACCCCAGCTGTTCTCTGGATAGAGTTAAACCTAACCAACTAACACACACGAGTAACCGAAGTGAGAACGCTTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTCTTTTTGTTTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 218228-217841 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035730.1 Sulfolobus sp. S-194 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================= ================== 218227 25 100.0 34 ......................... TTTAAATTTTTCTATTACCGCTAAACTTAAATTG 218168 25 100.0 33 ......................... AACGTATTGGTCTCCTATAAGCGACTATAGTTT 218110 25 100.0 34 ......................... ATTAATATTTTATCCATCTAAATCACCTAATTTT 218051 25 100.0 39 ......................... AACTTCTATAATTATTGTGTTAGTACCCGCGAAGTATAG 217987 25 100.0 36 ......................... GGATAACTGTCATGTCTGTCAACGCAACGTATATAT 217926 25 100.0 36 ......................... ATTTCTTTTTTCGTTCTAATAATCTTTCTAATTTTT 217865 25 92.0 0 C.......................A | ========== ====== ====== ====== ========================= ======================================= ================== 7 25 98.9 36 TGTAAAAACAAAAAGAAACTAAAAG # Left flank : CCATGCGTAGCCTTGTTTTGATCCTCCTATTCCTTCTACTGGTTTCCCGTAGTATTCTATTGATGTCCAGTCTATTGAAATTTTTATTGGTCTGTGGTTTTTAATTCGTTTTTTTAGTTTCTTTATTGAGAGTTTTTTTATTTTCTCTGTCATCTTGTCTATTGTTGTTTGTTCTATGTAGTTTCTTGCTGTTTGTGGTGATATGCTAAACTTTTTTGCCTTGTTTTCTATTGAGTCTCTTGTTATTGCTGCTGAGATTATTACTTGTTTTGCTTGTTCTGCTTTTCTTCCTTTGAAGTTCAAGATGGAAGATAATTTATTTTTGACTTGGTTGGGAGAGCTCGGTGTTATCACGTTGTATCTCCTACTAGTAATACCGGCTCTCCCAACCTTAAATTTTTACTATTAGTTTCAAATTTTCTATTATCATTTAAGTAATTCGCTGAGATAATTTTTGTAAAATGATTTTGGGTCTACCGAAACGGGCTTACGTCGTATGC # Right flank : CTTCTACTTTTTTATTTTCAAGAGGTATTTAATTAAAAAATCATTAAGCCAAAGAACAAAATGTAACTTTTTCCCACTATATATTTAGTATATTGGAGCTTCCTTAGATGCGTAAGTCATCATGATTTTTCTCAAATTTCTTATATTATGATGAAGAATATTGTCCGCACATAAAGTTTATAATTTATACAGTCATATTTTTCTATATGAAAGGAATTCCACTAATAGTGTACGCGATCACGTCCCTTCATGTAGGTATGGGCCGATCGAGTGGAGTTGTTGATTTACCTATCCAAAGGGATCCAGAAGGATTTCCAATAATATTTTCTTCCTCATTTAAAGGAGCTTTAAAGCAGTTTTGTGGACAAAAATTTAATGCATTTAATAAAAATGGGAGGATAGACTGTAATAAGGCGAGTGTATGTTGTTGTCTTTTAGGAGGGGAGGAAGAGTCTAATGCTGACGTCACATCGATTATTAGTCTAAGCGATCTTTATCCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAAAAACAAAAAGAAACTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 8 219437-228111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035730.1 Sulfolobus sp. S-194 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 219437 24 95.8 35 C....................... GTCTATTCGGTTCACCGTCAGAACAGTTACAATTC 219496 24 95.8 35 C....................... CTAAAAGGAGTGTAACTTCCTTAGAATCATTAAGC 219555 24 95.8 37 C....................... TGTACAAGTGATGTATATCTTTTTTCATCAGATTTTA 219616 24 95.8 38 C....................... TCTCTATTATTGACCTGATTCTTTCTTCACAAGCTATA 219678 24 95.8 38 C....................... CAGTCTCCCGTGTCAGGATCCCGTAATTTCACTATAAG 219740 24 95.8 35 C....................... CGGCTATTACTAAACCTAACGCTAGTGTTACTATA 219799 24 100.0 37 ........................ GGTAGAATAACGCATCATCAACATTCAGGTAAGTTAA 219860 24 100.0 37 ........................ GTCTAACCATTCTTATCCCCAATTACTATCTCACATT 219921 24 100.0 36 ........................ TAACAAAAAACAAATTCTTTTTAAAATTCACACGCT 219981 24 100.0 39 ........................ GGTTTATTTTGGCTTGGACTTACGTTTATTTTCATTTTT 220044 24 100.0 35 ........................ ATTTGAATTTCAGTAACCGTACCGCCGTATAAATA 220103 24 100.0 37 ........................ AATGTGGACAGTTATTTGGAATATCTAAAAAGTATCT 220164 24 100.0 36 ........................ ATTTGTTCGCAAATAAACGTGGAGACGGCGTATGTA 220224 24 100.0 34 ........................ AAAAGTGTCTTTGAATTTGAAAAAATGCCATCTG 220282 24 100.0 37 ........................ GCAAGAACAATTTAAGGGAGAGGTGGTATTATTCGAA 220343 24 100.0 37 ........................ GTGAATCAAGAATTGTGTCTACAATCGGTGCCATTGT 220404 24 100.0 35 ........................ ATAAAAAATTTTCACGTTGCGGGAGCTAGCCCAAA 220463 24 100.0 37 ........................ TCGCATACCATATCAAAAATAAAAGTCATAAAAACAT 220524 24 100.0 38 ........................ AAATATCTTAAACTCGTCCCACCCCACTTTGGAGCTTC 220586 24 100.0 34 ........................ AAGAATAAAAGAGATTAAGCTTTTTATTTAAAAT 220644 24 100.0 36 ........................ TCTAATAACATAGTAGACGACTTCTTTGACGATAAT 220704 24 100.0 35 ........................ AATAACACAATTAAAAGATCAAATAATCGGGTTTA 220763 24 100.0 36 ........................ TAACAGACGATGAGCTACCTACTGCCCGAAGCTGAC 220823 24 100.0 34 ........................ GGTAGGTAGCGAGTCTAACAGACGATGAGCTACC 220881 24 100.0 37 ........................ CTATTAATCCGTTATTACGTAATTTAGCAAAATCATC 220942 24 100.0 37 ........................ AAGTTTTTCCTCTTCTTTTTCATAATTATTCCAAACA 221003 24 100.0 37 ........................ GAAAATAAAATGAAAAACTAAAATTAGGAAAAATTAA 221064 24 100.0 36 ........................ TGGCTTCATTTATATCAGACCACTTATACACCATTC 221124 24 100.0 36 ........................ ATTTCCATAATTCCACTCTGTGTCAAGGAAGAATGT 221184 24 100.0 35 ........................ GAGGCGAGTTACAGGGGATAGAAGATTATGATGAT 221243 24 100.0 34 ........................ CTCATGTCCGTGATTAAATAGAATGTCGCATATT 221301 24 100.0 46 ........................ AGGAATTGAAGCAAGCATTACCTGTGGGGGCTAAAATAGGAAATGT 221371 24 100.0 36 ........................ ATGATTATGAGCAAATTGATTTTTCTTCGTTTGAAG 221431 24 100.0 36 ........................ AGTAATGAGTACCTTTGTACGTACCACCAAATAATA 221491 24 100.0 36 ........................ ATTAACAATAATAAACTAGTGTTAATTAAGTTCAAT 221551 24 100.0 37 ........................ CATTCATTTTCTTTTTCCCCAAATACTATCTCACATT 221612 24 100.0 35 ........................ AGCATTTTGTTCAGCTTTACAACTTTCTTGTATTT 221671 24 100.0 37 ........................ GGCTTCTTGAATTAGCCATCCCAAGAGATGTTATTCT 221732 24 100.0 36 ........................ CCTAATATTTTCATATGGACACAGAACTCGAACGAA 221792 24 100.0 34 ........................ CTATATTCTTCTTCAGCCGACTTTACTTCTTCCT 221850 24 100.0 36 ........................ ATGTGGACAGTTATTTGGAATATCTAAAAAGTATCT 221910 24 100.0 37 ........................ AAAATACCGTGTACAGCAGAAGAAGCCGAAAGAAATA 221971 24 100.0 35 ........................ AAAATAAGATTTTTGGATTCGGACACAAGCTTCCC 222030 24 100.0 35 ........................ TCGTCTGCACACCTTGAAATGATGGCACATTAGAG 222089 24 100.0 37 ........................ AACGTAATCGCGGAAACGTTGAATAAATTGAAGGAAA 222150 24 100.0 37 ........................ ATTCTTGATTATATACGGGGTTATGAGTAGCATTATA 222211 24 100.0 34 ........................ GTAACGGTTTTTTTGCATATTTTATATCACATTT 222269 24 100.0 37 ........................ GAACTAGAGGTAAAGAATGCGCCGCGGCCGGGATTTG 222330 24 100.0 36 ........................ AGGAGGAACTACTTCAAAATACTTGCAGGTCCTATT 222390 24 100.0 34 ........................ AACGTGAACTACCTCCCTCACGGAAGGGGACTTT 222448 24 100.0 36 ........................ TGTCCATCAAGCTATTATGTACTAAAAAAAATTTTA 222508 24 100.0 37 ........................ TTCAGATATCATAGAAAATCAAAGTTTTAAAGACAGA 222569 24 100.0 36 ........................ ATGTCAGATAGTTGGAAGGGAAATAATTTATTCTTC 222629 24 100.0 37 ........................ GAGCGTCCCAAATGGGGAAGATGCCCGGTATATTGTA 222690 24 100.0 38 ........................ GCTAATGCAGTAAAGCAACTATTAGCATATAAAAGGGC 222752 24 100.0 36 ........................ TTACATCACCGTAAAAGAACGCGTCTAAGGATCCGT 222812 24 100.0 33 ........................ AAGAAACATGCTTCAACGTTGTACTTTCGTTTA 222869 24 100.0 34 ........................ ATAGAGGCATTAATTCAGGCTCAAGGAAAACTGA 222927 24 100.0 36 ........................ ATTAACACCGTCACAATCTTGTTATCCTAGCCAAAT 222987 24 100.0 37 ........................ TGTACTTAAGAATGAAGACGATTATGTGGAATTTCTT 223048 24 100.0 35 ........................ ATGTTACTTCCGCTCCCGCTCCAAATTCTTTCTCT 223107 24 100.0 40 ........................ ATTTTGCCTTTGTGATCGTTACCTTTAACTGAGGGACAAT 223171 24 100.0 38 ........................ ACGTCTAATACATCAACGCCGTCGTTATATGTTCCGTA 223233 24 100.0 35 ........................ ACCAATGGGTTATTTGTAAATATGTTATTATTAAG 223292 24 100.0 34 ........................ ATCCGTTTACTAAAGTTCACCTTTGCATTACTCT 223350 24 100.0 34 ........................ AAAATTACATAAAGATTTATATATCCCCTATATA 223408 24 100.0 38 ........................ TTACCCATTTTATTCCCTCTAGTTAAAACTCTAAGTTA 223470 24 100.0 34 ........................ AATAATCGTGTACTCAATTGTAACATTTGCACTG 223528 24 100.0 35 ........................ ATATGGAATGGAAAATATTATTAATAACTTATTTG 223587 24 100.0 38 ........................ TGTCGTTCATTTTGCATACGCCAATTATACACTTAGCA 223649 24 100.0 36 ........................ AGAGGATTGAAAATTTCAGTAGAAGATGTTTTGCAA 223709 24 100.0 36 ........................ AAAATTCAGTGCAGATTTGCCAGACGAGGACACTGT 223769 24 100.0 39 ........................ AACGATATAGTAACGTCTTTGAAAGAACGAAAAACCATT 223832 24 100.0 36 ........................ AAAATTCAGTGCAGATTTGCCAGACGAGGACACTGT 223892 24 100.0 35 ........................ ATACAAACGAAAATGAAGAAGAATCCAAACAAGCT 223951 24 100.0 35 ........................ TCTCTGCAGATGGAGGTGTTTTCGTCAAACCAAAT 224010 24 100.0 37 ........................ CGATCTGACGTGGTTACGTGATTATATCGGGGCAATA 224071 24 100.0 36 ........................ GCGTTGGCAAAGGCAATATGTTGGAGGCTAAACGAT 224131 24 100.0 37 ........................ GAGAGTTCTTCCGACATAGTTATCAATCTACACTATA 224192 24 100.0 37 ........................ TTTTGATGAGAGTGAGCTCGACTGTTAGGATAGGAAT 224253 24 100.0 36 ........................ ATGTTGATTTAGAAATTGACGAAAAGACATTTCTTC 224313 24 100.0 36 ........................ GATTGACCCCAACGCGGATTTCTTGGACTTAGCTAA 224373 24 100.0 37 ........................ ATCTTTCAACAAAAACCCTTTTTTCGCCTTAATCTTC 224434 24 100.0 36 ........................ AAGATTTTTTGAGAGGTATGAGAGAATGGATATGAA 224494 24 100.0 36 ........................ ATAAATGCGGCAATCACATGGCAAAATGATTATGAA 224554 24 100.0 39 ........................ ACTAATCCAAGAGACGGATGTCCCGCCCACCTTCCTCAA 224617 24 100.0 35 ........................ AGTTATCTAGAATCCCATCCGATCGCCCTTCTAAT 224676 24 100.0 35 ........................ ATGGTATCATCGACACCATCGCCTCAGGTCTCATG 224735 24 100.0 35 ........................ ATTTGCTGAAAACAGTCCAATACGAAGTGATAAAC 224794 24 100.0 36 ........................ GACTAAAAAAATAAAAACTTGTGAAAGGAGCAAAAA 224854 24 100.0 37 ........................ TTGAGGAAGAACTCAACGAAATTAAAAATGGAAAAAT 224915 24 100.0 36 ........................ AATAAATACATTCATTCAATCTCGTTCCCAACCCCA 224975 24 100.0 40 ........................ AAAAGAGAATGTGAAGCATTAAGGAATATGAGAGAATATT 225039 24 100.0 35 ........................ TCTACACTTTACCCAACGACGTATGGCCCATCATT 225098 24 100.0 41 ........................ ACGATAAGTATTCTGTTTTAATTCGTGTCGGCTCAGTCTCA 225163 24 100.0 37 ........................ ATCATATCAACTAACGTTAAACTAACGTCATAATCAT 225224 24 100.0 35 ........................ TATTTTTAATATGTTTGAGTTTGGGAAGGTAGAAT 225283 24 100.0 37 ........................ TTACTGTCCTGTTGAACTTCACCGGATCACCTTTTCT 225344 24 100.0 39 ........................ ATTCAGCTTAAAACATCTACAGAATTTAACAATTTTCTT 225407 24 100.0 34 ........................ AGCCTTAGATCTCACAGTAATCATTGGATCTGGA 225465 24 100.0 36 ........................ ATATTTACTTTCCCTTCAGCGGGTAATAATGCTTAT 225525 24 100.0 35 ........................ CAAATATAACTTTGGATATGGCGATAATAAAATTA 225584 24 100.0 35 ........................ AATCTCCCACCAGAAATAGTTCAAAAAATTCAACA 225643 24 100.0 36 ........................ ATAGTTGCGGAAATCATATGCATATCATCTTCAAGA 225703 24 100.0 36 ........................ ATTTATTGCATTATATATAGCATAATTTGATTGAAT 225763 24 100.0 35 ........................ AAAATACATTAGAATCATCAGAATATTGTAGCCAA 225822 24 100.0 38 ........................ TTTCTACTGCCTTTAAAAATGCCATTTGACTTAAAATT 225884 24 100.0 36 ........................ ATGGTGCTGGGAATAATTATAGCTCTCGTTAGAGCA 225944 24 100.0 36 ........................ ATATTTCCCAGATTTTGTTAAATAGTCAGTTGCTAA 226004 24 100.0 35 ........................ ATTGGTGAATAAAATAATGGAAATAATCTAGGCAA 226063 24 100.0 37 ........................ TATGATGAATTTGTAAAGAATTGTCATATAGAATATC 226124 24 100.0 37 ........................ TAAAGCAAAAACTACTAAGGCGATAGAGAAAGCATTC 226185 24 100.0 37 ........................ AATACTAAGGGTGCTAAGAATGAGCAACAGCAAAAAT 226246 24 100.0 35 ........................ ACCTCACTAGGCACTCCTAACTCCAGAAGTTTAGT 226305 24 100.0 39 ........................ TAACGTTTTCTAACAATCCTGAATTTTCCGCAAGCGATT 226368 24 100.0 34 ........................ TATGGAGAGAAAAATAATAGAAATATCAGCAAAA 226426 24 100.0 34 ........................ AGCAAAAGAGAGGTGGAGAAAAGTTAAGATAGAA 226484 24 100.0 36 ........................ AGCGTTGGACATGATGGAAGTATAGTTGTGTCCAGT 226544 24 100.0 40 ........................ ATAACGGACATTATACAAGTATAAGACAAGATGAGAAGAT 226608 24 100.0 36 ........................ AAATATGGGTCTGTGATTCGAGTCGGTTCAGTGTCA 226668 24 95.8 43 .......................A CAGATATGTAGACCCATCATCGGGGTTTATAACACATGTAAGA 226735 24 100.0 35 ........................ ACCTATTTTTGCAATAGTCTTTAAATCGGTGAAAT 226794 24 100.0 34 ........................ ATATCATGATATCAAAACAAAAGATTTAAATATC 226852 24 100.0 36 ........................ AAGATATCATATATCAACATAATGGAGTAGATCAAA 226912 24 100.0 35 ........................ ATTGGACGAATGGAGCGGTGGGTGTTATACGCACC 226971 24 100.0 35 ........................ AGAGTGCCAGAGCAAACCGTATTTAGTGATGTGTT 227030 24 100.0 36 ........................ ACGATATCAAGAAAAACAATTGTTTGAGAGTAACGT 227090 24 100.0 34 ........................ ACATAATAAGCAGTGCAAGGAAGTTTGTTGAGGT 227148 24 100.0 35 ........................ AGACAGCGGGGATGAAGCACTAGCGTTCTTACTAA 227207 24 100.0 35 ........................ TTCTTTATATATATTGTTGAACCTTCCGTAACTTC 227266 24 100.0 36 ........................ AAACAACAATTAAAATTAATAGAATTAGAGGCTAGA 227326 24 100.0 36 ........................ GACTGACCCAGAAACAGTAAATGAGAGGATTGTTAT 227386 24 100.0 36 ........................ GACAGGATGAGAAGAGACTGGAGTGGCAGAGTAGCA 227446 24 100.0 37 ........................ TGAAACGGAAAAACGTAGATAGCTTTATAAAAAGCCC 227507 24 100.0 36 ........................ AATATGTGTCAAAAGCGACTTTGTCGAGCTTACAAT 227567 24 100.0 36 ........................ AAATTCTTCAACTGCGGGGGTTTATCAGCTCAACGT 227627 24 100.0 36 ........................ TTTCTTTTGTTCATACTTTCTCATCTCCTTATGAAC 227687 24 100.0 35 ........................ AGAATGATGACTGAGCAATCTAAAGGAGTTCATGT 227746 24 100.0 37 ........................ AACTTCAACCTTAGCATTAAATTCCTTTTGAAGGAAT 227807 24 100.0 37 ........................ ATGCGAAAATTATAATTAAGTGTGATGAGTTCACGAA 227868 24 100.0 37 ........................ AAGTAGCGGAAAAGCTAAGAGAAATCAACGAGATTAT 227929 24 100.0 37 ........................ TGTAGAACTTTTAAGACAAAATAATATAGATATTGAA 227990 24 100.0 36 ........................ AATTACTTTCTGGTGTATTGTAATGACAAATTCTGA 228050 24 100.0 12 ........................ TTGATCTTGTTG Deletion [228094] 228086 24 79.2 0 ..CG.T....T...........C. | CG [228099] ========== ====== ====== ====== ======================== ============================================== ================== 145 24 99.7 36 GTTTTAGTTTCTTTTTGTTTTTAC # Left flank : TGCTGTACCCGTGGGTGACGTTAAGGTTCACCACGATTTTGATGGTATATATAGGACGAGGAGTAAGGGGAAGGATAGGGTTGCTTTTAGGTTGATTGTTCATCATAGGGTAAGGGATGGCAAGAGGGAGTATTTTGCTAAGGGGACTAATCTTGATTTGCCCAAATACAAGGTTGTTAGGTTGTATAATGAGGTTAGGACTCCTATTGAGACTTCTTATAGGATGGTTAAATCTTTCTTGATTTTCACGTCTTCTAGGAGTTGGGTTTTTCGCTTGTTCGTCTTCGTTCTGGCTATACTTATTTACATGTTGTTCATGTTTGTTAAGGGGAAGATGTCTAGGGAAGACTTTCGTTTATTCTTAATTCTGTTATTTTTATTTGATAATATTAATTATTTTTACGAATATTCATTTAATGCTCTAAAATCACTTTTTAATACATTAGACTTATTTTCAAGGGGGTGATTTTGGGGTCTACCGGTTTATGAAGTTCTCTAAG # Right flank : CTATTTATAAGGTTTACTCTATGTTCTGTATCCTAGAGGTTTGTCTTTGGTGTTGAAGGGTTTTTTAGGTGGTTTTAGGGTTATCCTAAAAGTTTTTATGTATGGGTGTTGAAGGTGGGATATTCCTAAAAATAAGGGGATTTTTTACGTTTAAAAACGTAGAAGACGTAAAATTTCCTAGAATAATATTCATATATTATTCTATTCTTTTATTTTTCTAGTTTAAAATATTGTTAAAGTAACAGGTAAATCGTTAATAAATATGGCTATTTTTAATTTTTATCTATAAAAATACTATATTAAATATAGTCTTTATTTCATTATATTCTTGTATTGTGTATGACTTTTTAAGTTCTTATCGAATATTAGAAAAATCATTTAGACTTTATATAAGTTTAATATAATAGAATTATTTTCAACTATTTTTAAGTATGCTACACCATGCATAGTTTGGCCTAATTTACTTCTCAACTATAGTTAATGTCTTGATACCTTGGTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTCTTTTTGTTTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //