Array 1 77043-79454 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAB01000008.1 Neisseria dumasiana strain 124861 NODE_8_length_102006_cov_12.0963_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 77043 36 91.7 30 .GG.G............................... GGTTAACCGATTCCTCGCTTACTTCAACCG 77109 36 100.0 30 .................................... TCTTTATTGATACTGCTGCTAAACTTGAGA 77175 36 100.0 30 .................................... GTAAAATTTATTGCCCTTAGATTTTGCCTT 77241 36 100.0 30 .................................... GTAAAATTTATTGCCCTTAGATTTTGCCTT 77307 36 100.0 30 .................................... CCGTTTAACGAGCTGATTAATGACGTTCGC 77373 36 97.2 30 .......T............................ CGCCAAGAGCCTAATATATTCAGAGTTGAA 77439 36 100.0 30 .................................... ACCCAAGCCGACATTGAATGGGCTTGCAAT 77505 36 100.0 30 .................................... TTTATTCTCCGGCAAATCCACTTCAAGCTG 77571 36 100.0 30 .................................... TGACCCAGTAGAGTGGTGAGATGCGTTTAC 77637 36 100.0 30 .................................... AGCAGGATGGAAAGAGACACAAGTTGTTGA 77703 36 100.0 30 .................................... TGTGGCTTACGCATGGGGTGCTAAACCCAC 77769 36 100.0 30 .................................... GCAAACACGTTTTGATGTTAATGCAGACGG 77835 36 100.0 30 .................................... TGTTCCTTTAGCCACTTAAACCCGTGTTTT 77901 36 100.0 30 .................................... ATGTAGGGTGTTGACACGGTTTAGGGGTGT 77967 36 100.0 30 .................................... CGCACGGGTAGGGGAGTTAGCCTCAAATGT 78033 36 100.0 30 .................................... GTTAAATACTGATGGTTCTTCTATATACGA 78099 36 100.0 30 .................................... ACTCGTAGATGATTTTAGACGACTTGCACA 78165 36 100.0 30 .................................... TAATGATGAATACGTGAGAGATAATACGGA 78231 36 100.0 30 .................................... AACCGCTTTGTAGCCAAGACCGACTACGAA 78297 36 100.0 30 .................................... CGCTGCGCCTGATGCCGCTTGAGCCGCGTT 78363 36 100.0 30 .................................... GAATTTTTCAATGCAACAAATCGAGGACAT 78429 36 100.0 30 .................................... TGGGTATCCTACGTTCTTTCATTGTTCTTT 78495 36 100.0 30 .................................... GAATGGCAAAACCCTGCGTGAGGCTATTGA 78561 36 100.0 30 .................................... ATCAACAGGAAACGCATGGCATAGATTATT 78627 36 100.0 30 .................................... TCTGCGGAAAATCTACCACGCGTCGCACGT 78693 36 100.0 30 .................................... AAAGGTCAATGCCGAGAACACGAAACTCAT 78759 36 100.0 30 .................................... ACGGTTGGAAACCGCTTGGACGAAGTAGGA 78825 36 100.0 30 .................................... GTCTGTAATTTGATCAGGAGGTAATATGCG 78891 36 100.0 30 .................................... GAAACTAAAGCACCCAAACCAAATGCGACA 78957 36 100.0 30 .................................... CTATGATTCGCCGTCTTATCTCGATAATCA 79023 36 100.0 30 .................................... TGCAATTGCGGCAATGGGCGCGATGATGGC 79089 36 100.0 30 .................................... CTTTACCGAACGTGGGGAACGTGGTCAGCT 79155 36 100.0 30 .................................... AACCCGCTGCCGACACCGGGCGTGATGTGC 79221 36 100.0 30 .................................... CAAAAATCCAAGCTGTTAAGGAACAATGCC 79287 36 100.0 30 .................................... TAAATGATTAGATTTAAACGCCCAAACAAA 79353 36 100.0 30 .................................... TGGCAAACCAGCAGCAGCCGCATCAGCCAA 79419 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.7 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : AGGGTCTGAAAAGAGGCTGCGCAATTCTTTCCAAACCAGATAAAAAATGTTTTTCAGAATCCTCATCAGTTTTTGCCTTTGGGTATTCAGACGGCCTGATACTTTCGCGAACATCGGGCAAGGGGTTAAAATATAGATAACTAGTTGATATTCATTCAGTTTTATAATCAGGTCAAGCCTAAAGTTGATTCACGATATACAGTCAATCAACTTAAGTTTAGTAACAAAATCGTAGATACTGTCCTTCCCGTCAAACCGTTGCCGGCGGACATGTACTCTGCCACTACGATTGTGTTATTAAAATTGGGTGGATTGATTATAGAACCCTTGCAAAACTTGGGTCTGCAAGCGTCTCGGATTTTTTCTTGAGATTGTACAAAGGTTTCAGGCCGTCTGAAAAATCAGTTACCTGCTTTTTCAGACGGCCTTTAGTATCAAATGTTCGTTCCTTTGCTGCGAACGCTGTGTTTTTCTATGGGGCTGAAGCAGGTGCAGCAGGG # Right flank : TACTTAAACAGGTAAGCCTTATAAAATAAGGCTTACCTGTTTTATTTTGATTAAAAAAACGGCTTCAAAAAAGCAAAAGTTGGTCGGCATTGACCTTTTTTTCGCGGGGTTTGGGTTCTCCAATAAGCATGACCATACTTGCGTATTGCTTTTCTGTTACTTCCAAATAGCGTACTTGGCCTTCTTCCGGTAAATGCAGCATCAACCTTTTGTGGTGTTTCTGCAACGCGTCCCTTCCTTTTACAATGCGTGAATAAACTGATAATTGCAGCATGTGATAGCCGTCTTTCTGCAAAAATTTACGAAATTGGCTAGCTGCTTTTCTTTTGGCGGCAGTGGTTACAGGCAAATCAAAGAAAACAATTAAGCGCATAAATTTAGCCTCACTCATAATCATGTACCTTTAAGCGCAGCATTTGCGGTAGCTTTAACAGTTTGGGCTTGTTTTGGCTGACGGCCGTCTGAAAAGATTGGATGGTGCGGTCTATGGCAGCCAATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 49-342 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAB01000127.1 Neisseria dumasiana strain 124861 NODE_127_length_392_cov_0.656604_ID_253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 49 33 87.9 31 TC.........................GA.... GAAATTTTCGGTCGCCACAAAATCCGAATAT 113 33 93.9 33 C..............................C. CCCTTTACGAGCAGCCTCTCTAATTTTTTTATC 179 33 93.9 32 AA............................... GCGATATTGCCGCTCATGCGAAACGCGCGGGC 244 33 100.0 33 ................................. TGTTTATTGAGGCGAAATCTTACAATGAAAAGC 310 33 93.9 0 TG............................... | ========== ====== ====== ====== ================================= ================================= ================== 5 33 93.9 32 GTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTTGTGTGTTGAATCACTATGCGCGAGTGGGGTCTTCGTGTTAGGGTGT # Right flank : CATCATGCCAAATTGCAAGGCTTAAGCCGCCTCCAGCCGCCTTCGGGCGG # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-297 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAB01000137.1 Neisseria dumasiana strain 124861 NODE_137_length_297_cov_26.4647_ID_273, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1 32 97.0 33 -................................ GAACCGCTACCTTTACCGCCGCCTGAACTGCCA 66 33 100.0 33 ................................. GATGCCGAGAACCGATTTACCCAAACGCAGTAC 132 33 97.0 34 A................................ TGTACCGGTTGGTCAATCTGTGTGCGGGTGGTGC 199 33 100.0 33 ................................. ATGGAAGCCCACACACTCCCCGCAGCATGAATG 265 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 5 33 98.8 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29-462 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAB01000104.1 Neisseria dumasiana strain 124861 NODE_104_length_462_cov_17.2239_ID_207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 29 33 100.0 33 ................................. ATGGAAGCCCACACACTCCCCGCAGCATGAATG 95 33 100.0 33 ................................. AGTTTTAAAACCTTCGAAAATGTTGATTAATTT 161 33 97.0 38 A................................ GCGGTCTTTAAAATATTGATGCAATGCCCATGATTTTT 232 33 97.0 33 C................................ TCCACTACCGGCTGGTACGTCATTGGAGATTAG 298 33 97.0 33 T................................ TGTGTCGGCTTATTCACTACCGGCAAAGCTTTG 364 33 97.0 33 A................................ GAACCGCTACCTTTACCGCCGCCTGAACTGCCA 430 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 7 33 98.3 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GGTTGGTCAATCTGTGTGCGGGTGGTGCG # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 398-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAB01000011.1 Neisseria dumasiana strain 124861 NODE_11_length_85034_cov_11.0144_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 397 33 100.0 38 ................................. TCCGCCCCTTCCTTGCTGCAAGGCTTAAACTCCGAACA 326 33 97.0 33 A................................ TGTGTCGGCTTATTCACTACCGGCAAAGCTTTG 260 33 97.0 33 A................................ GAACCGCTACCTTTACCGCCGCCTGAACTGCCA 194 33 100.0 33 ................................. TGTTACTAGTATGTCCATTATTTCAGTCCATTT 128 33 100.0 33 ................................. GAACCGCTACCTTTACCGCCGCCTGAACTGCCA 62 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 6 33 99.0 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : AGTGGAGCAGAATAAGGCTGTGCTATAATTGTGTTCCGCTTTTTTGAAAACGTTAGCGCACAAAGGCTCTGAATGCTTTGTTTAGCAAGCGTTTTCAAAGAGGCTCCAGCCGCCTTCAGGCGGCTGGAACATTTCAATAAATTCATGGCGGAAATGCTTGGTAAAGCTGCGCCCAGCCGCCTTCAGGCGGCTGGAACATTTCAATTTCACTGATAGAGGCACGGCGCTCTTTCCATTCTCCAGCCGCCTTCAGGCGGCTGGAACATTTCAATTCCTTGCTATAATGCTCCTGCGGATTTCTTAATCCCCAGCCGCCTTCAGGCGGCTGGAACATTTCAATGTCTTCGATGGTTTCCAAACCGCTGCCGACAAAACCAGCCGCCTTCAGGCGGCTGGAACATTTCAATTTATTATAATCGTGTTCCTTTAGGTTTTACAGGACCCAGCCGCCTTCAGGCGGCTGGAACATTTCAATACGGAGAAGGAAGAAGAGTAGATGA # Right flank : CGATGCCGAGAACCGATTTACCCAAACGCA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 423-792 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAB01000011.1 Neisseria dumasiana strain 124861 NODE_11_length_85034_cov_11.0144_ID_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 423 33 100.0 35 ................................. GTCCTGTAAAACCTAAAGGAACACGATTATAATAA 491 33 100.0 34 ................................. TTTTGTCGGCAGCGGTTTGGAAACCATCGAAGAC 558 33 100.0 35 ................................. GGATTAAGAAATCCGCAGGAGCATTATAGCAAGGA 626 33 100.0 34 ................................. AGAATGGAAAGAGCGCCGTGCCTCTATCAGTGAA 693 33 100.0 34 ................................. GCGCAGCTTTACCAAGCATTTCCGCCATGAATTT 760 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 100.0 35 ATTGAAATGTTCCAGCCGCCTGAAGGCGGCTGG # Left flank : TGCGTTTGGGTAAATCGGTTCTCGGCATCGTTTCAACACACAGCCGCCTGAAGGCGGCTGGCTGGCAGTTCAGGCGGCGGTAAAGGTAGCGGTTCGTTTCAACACACAGCCGCCTGAAGGCGGCTGGCAAATGGACTGAAATAATGGACATACTAGTAACAGTTTCAACACACAGCCGCCTGAAGGCGGCTGGCTGGCAGTTCAGGCGGCGGTAAAGGTAGCGGTTCGTTTCAACACACAGCCGCCTGAAGGCGGCTGGTCAAAGCTTTGCCGGTAGTGAATAAGCCGACACAGTTTCAACACACAGCCGCCTGAAGGCGGCTGGTTGTTCGGAGTTTAAGCCTTGCAGCAAGGAAGGGGCGGAGTTTCAACACACAGCCGCCTGAAGGCGGCTGGCTCATCTACTCTTCTTCCTTCTCCGTA # Right flank : GAGCCTCTTTGAAAACGCTTGCTAAACAAAGCATTCAGAGCCTTTGTGCGCTAACGTTTTCAAAAAAGCGGAACACAATTATAGCACAGCCTTATTCTGCTCCACTCGCATATTTCAAATTCCTGATTGTTAAAGAACAATTCCGCATCGCTAACCTCCCCATATTTTCATGAGAACCACGGGTTAGCGATTCACACGATCAGCGTATCCTGAAACACGTCCACCGCTGCCTTCGCGCCGTGGTGTTCCACCTTTCGCCGCCATTTGCTACCCAGGTGGTAAAAGCGCAGGCTGTCGGTTTCGGGCTGGTAGGTGTCGAGCAGCTTGGCTTTGAGTTTCACCCACTGATCAGGCGTTACGTCGCACTCGAATACCGAATATTGCACGCGCACGCCGTAATCCAAGCAATGTTTGGCTATGCGCCGCAGCCTCGCCTGCCCATCTGCGTCTTCCAGCGAAATATCATAAGTAATCAACATCAACACGCTATTTCCCCTTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATGTTCCAGCCGCCTGAAGGCGGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 29-1194 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAB01000040.1 Neisseria dumasiana strain 124861 NODE_40_length_17424_cov_11.3365_ID_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 29 33 100.0 33 ................................. ATGGAAGCCCACACACTCCCCGCAGCATGAATG 95 33 100.0 38 ................................. GCGGTCTTTAAAATATTGATGCAATGCCCATGATTTTT 166 33 97.0 33 C................................ TCCACTACCGGCTGGTACGTCATTGGAGATTAG 232 33 97.0 33 T................................ TGTGTCGGCTTATTCACTACCGGCAAAGCTTTG 298 33 97.0 33 A................................ GAACCGCTACCTTTACCGCCGCCTGAACTGCCA 364 33 100.0 33 ................................. GATGCCGAGAACCGATTTACCCAAACGCAGTAC 430 33 97.0 34 A................................ TGTACCGGTTGGTCAATCTGTGTGCGGGTGGTGC 497 33 100.0 33 ................................. ATGGAAGCCCACACACTCCCCGCAGCATGAATG 563 33 100.0 38 ................................. GCGGTCTTTAAAATATTGATGCAATGCCCATGATTTTT 634 33 97.0 33 C................................ TCCACTACCGGCTGGTACGTCATTGGAGATTAG 700 33 97.0 34 T................................ TCTTTCAAGGCATCGATTTTGCTTGATATGTTGT 767 33 97.0 33 C................................ ATTTCCGCAGCGCGGGCGCGCTCTTTTTCGCTT 833 33 97.0 33 A................................ TCTAATATCTCAACGTATAGCCCAAACTGTCCC 899 32 87.9 33 TT...-.......G................... TTAACCAAATCGTCTATGCTTTCGCCCGTGGCC 964 33 81.8 33 TT.....A.....GC.T................ GGCAGGCTTAGGCTCGGCAAATAGTTCCGATTG 1030 33 81.8 33 CT.....A.....GC.T................ GAAATCCACGGCCAAACGCACAGGCACGGCAAT 1096 33 87.9 33 CT...........G.......A........... GATATCGAAGGTTTGGTTTTGAATACCGTATAT 1162 33 75.8 0 .............G.......ACA.A..T.TG. | ========== ====== ====== ====== ================================= ====================================== ================== 18 33 94.0 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GGTTGGTCAATCTGTGTGCGGGTGGTGCG # Right flank : CTTCTTTGTTAATTTCTTTCAGACGGCATTGATGTTTTCTGTTTATGTTGGAAATGTTATATCTTTTTGAAACCAAATGATTTTGCGTGCGTCCACCCATAACGGCCATTCGCTGCCGGGTTGTAGGTTGAGATTATGGGTTTCCGAGGGATCGAGGTGCAGCTGTATTTCGCCGTGTTGCGGGTGGATGAGTGTGAGTAGGCTGCGGTCGGGCAGGCGGGTGTGGGCGGTGATTTTGGCGTTTTGTCCTTGCGGGTGGTTGAAGTGTATGGCTTGTCGGGGAATGTAGCGGGTGTCGTTGACGTTGTCGGCGCCGATCAAACGGGCGGCGCGGGCGTCGGAGGGGGCGACGATGAGTGCGCCGGGGGCGGCGAGTTGGATGATTCGGCCGTTGTGCATGAGGGCGATTTGGTCGGCAAGGGCGAAGGCTTCTTCGGGGTCGTGGGTCACTAAAACGGCGGGAATGTTGCGGTGGCGGATGTGGTTGGCGGTGAGCTGGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6901-7910 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAB01000040.1 Neisseria dumasiana strain 124861 NODE_40_length_17424_cov_11.3365_ID_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 6901 33 97.0 32 ................................T TTATGGCTGATTGTGCATTGTGATTTGTGGCC 6966 33 97.0 32 G................................ ATCATAAACATATCATAAGAATTTGAATTAAA 7031 33 100.0 32 ................................. CTTACAAAACGCCAAAAACTAAATTTTTGACC 7096 33 97.0 33 ................................C TTTTCGGCAAAATTTATGGGGCGCTGCCCCAAA 7162 33 97.0 32 C................................ CGTATCCGTACTAAGTTTGGTTTGAATGTACG 7227 33 100.0 31 ................................. ATTAAACGGTGAAAGCAAACTACTGAATATT 7291 33 97.0 35 A................................ CTCAAATCCGTAATGGATTTAGAAGTACTTTGAGT 7359 33 93.9 32 A...............................T TCTTCAGCCCAAGCAAGGTATTTGAACAGCCT 7424 33 97.0 33 G................................ TTGCATGGGTGTGTCTGAAAAAGTGCGGTGTCA 7490 33 93.9 34 C...............................C TTGTTTATTTCGCAAGTCTTTTTACAAGTTTGTG 7557 33 93.9 32 C...............................T CTTCCACATTTGCGTAAAGATTGTAAAGCTTC 7622 33 93.9 32 G...............................T TTAGCTTGCATTGTTACTAGTTGATTTTCAGG 7687 33 93.9 32 C...............................C CGTTCAAATTCAGGCACATCGTCTGTTTTGGC 7752 33 97.0 32 A................................ TGCGTAGCAGGCGTTCGAGTGTGTCCTGCACC 7817 33 93.9 29 G...............................G TGCAAGAGAAGAAACGGCACGGATACCAC 7879 32 84.8 0 ............C......C....A..-....C | ========== ====== ====== ====== ================================= =================================== ================== 16 33 95.5 32 TCAGCCACCTTCGCGTGGCTGTGTGTTGAAACA # Left flank : ATGCTTATCAGAATGCACCCGCGTCGGCTTTATCCGATGAAACCGCCACCCCGTTAATCTAACCTTATCTCTGCTTAGCTTGGATTGAAGGCCGTCTGAAAACCGCTTTTCAGACGGCCTCTATCCCAAAGCCGCAGACGGAGATTTGCAAAGGTCTCGATTCGTTTGGCAACTATATAGTTAATCCACTTAAGTTTAATAACAAAACCGTCATACTCGGGCTTGACCCGAGTATCTTGAGTTTCAGCAAATTTAGGCGATATTCAGGTTAAGCCCGAGTATGACCGATGTACTATAGAGTGATGCCGTCTGAAAACGGCTATATCGCGCCAACCTGCGGTTCACATCAAAACACACCGAGATTAGCGAAGTATTTTTGTTTGGCGATTCAAACCGTTGCCAGTGCATAAGCCGTGATATAGTTCGGCATGGCCTTTTTACAACCTGTTTAGCGCAAATGATGACTTGAAGCCGCGTGACACAAGGGATGGGGAAAGGGC # Right flank : CTTCTCAAAACACAACAGGCCGTCTGAAATGTTCAGACGGCCTGTTGTCATTTCAAACGCCTTAATTAAATACGTTTCGCCAACGCTTCGGCTTTGCCCACATACAGCGCGGGTGTTAAAGCCAGCAGCTGCTGTTTGGCATCGGTGGGGATGTCCAGCGATTCGACAAACACTTTCAGCACTTCGGGCGTGATGCCGTCTTTGCCGCGGGTGAGGTCTTTCAGTTTTTCATACGGATTGGCCACACCGTAGCGGCGCATCACGGTTTGAATCGGTTCGGCCAAGAGTTCCCAAGTGGCGTCCAAGTCGGCGGCTAAGGCGGCGGGGTTGGCTTCCAGTTTGTTCAGGCCGCGCAGGTGGGCGACCAAGCCCAGCACGGTGTAGCCTGCGCCCACGCCCATGTTGCGCAGCACGGTGCTGTCGGTGAGGTCGCGCTGCCAGCGGGAAACGGGCAGTTTTTCCGAAAGGAAGCCCAATACGGCGTTGGCCATGCCCAAGTT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTTCGCGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //