Array 1 1077820-1080288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016837.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1077820 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 1077881 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 1077942 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 1078003 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 1078064 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 1078125 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 1078186 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 1078247 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 1078308 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 1078369 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 1078430 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 1078491 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 1078552 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 1078613 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 1078675 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 1078736 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 1078797 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 1078858 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 1078919 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 1078980 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 1079041 29 100.0 32 ............................. GATATGGGGTTGACGCTGGACAGATCTCCTAT 1079102 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 1079163 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 1079224 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 1079285 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 1079346 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 1079407 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 1079468 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 1079529 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 1079590 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 1079651 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 1079712 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 1079773 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 1079834 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 1079895 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 1079956 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 1080017 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 1080078 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 1080139 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 1080200 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 1080261 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1096960-1100533 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016837.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1096960 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 1097021 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 1097082 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 1097143 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 1097204 29 96.6 32 .............T............... TATTACCCTTTCAGAATCTTTTTTGGATTGCT 1097265 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 1097326 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 1097388 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 1097450 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 1097511 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 1097572 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 1097633 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 1097694 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 1097755 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 1097816 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 1097877 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 1097939 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 1098000 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 1098061 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 1098122 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 1098183 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 1098244 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 1098305 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 1098366 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 1098428 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 1098489 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 1098550 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1098611 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 1098672 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 1098733 29 100.0 32 ............................. TGATCTGGCTGAGTTCTCCAGTGACGACAAAA 1098794 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 1098855 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 1098916 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 1098977 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 1099038 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 1099099 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 1099160 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 1099221 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 1099282 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 1099343 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 1099404 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 1099465 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 1099526 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 1099587 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 1099648 29 100.0 32 ............................. GCGACGCGGCGTGGTTTTAACTGGCTGCGGGG 1099709 29 100.0 32 ............................. CAGGAAATTACGCGACTGTTTGATCTGAACCA 1099770 29 100.0 32 ............................. AAGACGCAAGCGTATTGCGCCACATGCGAGAA 1099831 29 100.0 32 ............................. CCCTGGCAGGAATACAAACTTGTGATGCTGCG 1099892 29 100.0 32 ............................. TAGAGAAGGGGAAAGGCGAATTTATCCCTTCC 1099953 29 100.0 32 ............................. TTGTTCTGTCGCTGTCGTTAAACTCTCCGTAA 1100014 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 1100075 29 96.6 32 ............T................ AGATCGCCAACGCGCTCGGTTTGCGTCTGGAA 1100136 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 1100197 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 1100259 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 1100320 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 1100381 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 1100443 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1100504 29 96.6 0 A............................ | A [1100530] ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //