Array 1 476472-477719 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPU01000002.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_35_S91 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 476472 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 476533 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 476594 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 476655 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 476716 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 476777 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 476838 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 476899 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 476960 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 477021 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 477082 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 477143 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 477204 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477265 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477326 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 477387 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 477448 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 477509 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 477570 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 477631 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 477692 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494266-497834 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPU01000002.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_35_S91 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494266 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 494327 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 494388 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 494449 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 494510 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 494571 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 494632 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 494693 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 494754 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 494815 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 494876 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 494937 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 494998 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 495059 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 495120 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 495181 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 495242 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 495303 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 495364 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 495425 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 495486 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 495547 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 495608 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 495669 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 495730 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 495791 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 495852 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 495913 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 495974 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 496035 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 496096 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 496157 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 496218 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 496279 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 496340 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 496401 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 496462 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 496523 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 496584 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 496645 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 496706 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 496767 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 496828 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 496889 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 496950 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 497011 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 497072 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 497133 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 497194 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 497255 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 497316 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 497377 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 497438 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 497499 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 497560 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 497621 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 497682 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 497743 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 497805 29 96.6 0 ............T................ | A [497832] ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //