Array 1 70989-71871 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWTZ01000001.1 Pantoea sp. VH_4 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70989 29 100.0 32 ............................. GCACATGTAAGCCCGCCGCGTGCGGGCTTTAA 71050 29 100.0 32 ............................. GTCTCGCAATGAGCAAATACACAGACTGTATA 71111 29 100.0 32 ............................. CTGACTCTTCATGGCTGGCTGATTCATGAAGC 71172 29 100.0 32 ............................. ACCTGTCTGATTTTGAGCGGGATATTAAGGGC 71233 29 100.0 32 ............................. AGTACTTCTTTCGCCCATCATTCACAGCGATG 71294 29 100.0 32 ............................. TTGGCGGCGACTGGATCGCAGATTGGGAGGCT 71355 29 100.0 32 ............................. TGCGCTGGTGCCTTTGACGCGATATCCGTCGG 71416 29 100.0 32 ............................. GCTTAACAGTCAGGCCGGTCAGGTACTGGCTG 71477 29 100.0 32 ............................. AACAATTCGAGAGGCTAGAGTGACGATACCCG 71538 29 100.0 32 ............................. GTTGAGCCCGTGTCCGGCTGACGCGGGATGCA 71599 29 100.0 32 ............................. GATTCAGCCTGCGCCTTGTCAGCGGAGAAGAA 71660 29 100.0 32 ............................. CGTGGCGCTACCCATGCCCGGGTAACGCCGGA 71721 29 100.0 32 ............................. GAGTATGTGGGCAGTGCCATTACGCTGACGCT 71782 29 100.0 32 ............................. GCGCAGAGCTAATAGAAATTGACACAGAACGA 71843 29 89.7 0 .......G.A..C................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CAGAGCGATCCGTACGCCTTTATCCGTAACGCCTACTTCCAGCGGCACGACTTCCTGGCGCGTGGCGGTAAACTCAAGCCGGAAGATAATCCTAACGCAGCCGCGATTCAGGATGACCTGAAGGATATCGATTCGCAGTAATGTTACGGTCCTTAAAAGGGCGCGTCACATACGTCGTTTTGATTTTATTGCTGACGTCTTACCCGGTCTGCTGTAAGACCGGGTAAGAACAGAGTTCAGGTTCAGGCTCTTCCTGATCGCCCGATTCTCGTCGTTCATGCTATGGAAAACTTTTCTCTTCTGCTTTTACTTCTGACTTAATTCGTAACGACCTTTCCTGTTTGGGGCTGTTATTAACCTTCTGCCTTCCTGAATAACAGTATTTTTTCGACAGATTTGGTGTCTGAGAATAACGGCTCATAGGGGCAGATCCGGATGTAAAATTCGGTAGAATTTTCTGGTGCGAAAAAACGCTTTGTAATCAGTCGGATAATTTTAGA # Right flank : GCCGCGATAAACCTGTAATGAAAGAGTCCGGGAAAGGTGAGGGTAAATCTTCGCTATGCGAGCGTTGATTAACCATGGTGAAGAAAGACGTCGAAGAGTGAGAATTTCTGGAACTCCCGTACCTGCCGGGAAAAAGTCGAGGTTGGTCAGCTGTCTGAAGGCGACTCATCAGAGTCGCCTTTTTTAAACCCGTCCCTCGATCAGAACTTGTAGTTAAAGCTCGCACCATAGAGCCAGGCCTTGCCTTCAGAGGTAAAGGTATAAGGACCTTCTTTCACCGTTACTTTCTGCCCATGCATATAAGAGATACCCAAATCGACTGAGGCATCATCGTTAAAGGCGTAAGACGTACCCGCACTCAGCCATAAACGATCCTGGTCCGGAATAGAGATAGAACGCTTATCAGCCGGTACCGGGCTGTCATCAAACGCAATACCGGTACGGAAAATCCAGTTTTTGTCGTAGGAATAGGTTGTGCCCAGTGCAATGCGGTAAGCATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 165929-166201 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWTZ01000007.1 Pantoea sp. VH_4 Scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165929 29 93.1 32 ............TG............... CGCGGCGCAGCAGGCGTCGTCGTGGCGATCAT 165990 29 100.0 32 ............................. GCAAGCAATTTGCGGAATACCCTGCCCATGCA 166051 29 93.1 32 .....A..........T............ GTCAAGCAGGCAATCGCGTGGTCACGGCTCTA 166112 29 100.0 32 ............................. CGTATCGTTTCAATTGCAGTTGACCCATGCCG 166173 29 79.3 0 ..A.................A...C.GAA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGAGAAAGAAGCGAAAGAGAAGGGCATCAGCTACGAGACCTCCACCTTCCCGTGGGCTGCCTCTGGCCGTGCTATCGCTTCAGATTGTGCAGACGGCATGACCAAGCTGATTTTCGACAAAGAGACGCACCGTGTTATCGGTGGCGCGATTGTCGGTACTAACGGCGGCGAGCTGTTAGGCGAAATCGGTCTGGCCATTGAGATGGGTTGTGATGCGGAAGATATTGCGCTGACCATCCACGCTCACCCGACCCTGCATGAGTCAGTAGGCCTTGCTGCAGAAATCTTCGAAGGTAGCATCACCGATCTGCCTAACGCGAAAGCGAAGAAGAAGTAAGTTTCTGCTGCTGCAAAGAGAAAGCTCCCGTTACGGGGGCTTTTTTTTGGTCTGGATTTGGTGTTGGATATTATGTGTGCATTTGGGATGATTCAGGGTGTAAAATCTGGTGAAATTTTAGGGTGTGTAAAAGCTTATATAAATCAAAGGGATGTTTTTAGA # Right flank : ACAGACGTACATAGCGGGCCAGGACAAATAGCGAGCCACATCAATGAGGACCACGATATGAGATATCCGATTTACATTCACAGAACTGACACAGGAACTTATAGCGGATTTGTGCCGGACATTCAGGGCTGTTTTTTTGCTGGTGATACGTTTAACAAAACGATAGAGGATGCGGCTAGCGCTATAGATGCACACGTAGAGTTCACCGTTAATGAAGGTGGCCGTATACCCGTTGCGCGGACGTTCGAAATTTATGCAGATGATCCGGACTGTCAGGGCGGCACCTGGGCCTATATCGATGTCGATTTGAGCAAGTATGATGGCCGGTCTGTAAACTAAATATTACGTGTTCCCCGCGTCAGCGGTAAAAAGCTGATGAGCTGTTAAAAAACATGTCTCAGCGTAAGTATGTTCCCTGCTTCAGCAGGGAACATACTGGTAGTTTGCTACTTATGGTGTTTTTCAAAATCCGGCGTAATTTTAAAAATAAATACAAATCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 121314-120186 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWTZ01000011.1 Pantoea sp. VH_4 Scaffold_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121313 29 86.2 32 A...........CC..............T CGTTCGAAGCGTTTGCTGCGCCCGGTTTAAAC 121252 29 100.0 32 ............................. GCCCGTCAACGCACTTCAAAAAAATAACCCCT 121191 29 100.0 32 ............................. GAATGCCTGTCAAATCAGCAGCCTGTTTTCTG 121130 29 100.0 32 ............................. CGCGATATGCCATTTGATGGTGTGGCTCACAA 121069 29 100.0 32 ............................. CGGTGAGCACACTAAACAGTGACGCAGAACCG 121008 29 100.0 32 ............................. GGATGGCAATACCTGGGCGCATTTCTCATCGA 120947 29 100.0 33 ............................. CGCATCCATCTGCGCACTGGCGGTGTTAATTGC 120885 29 100.0 32 ............................. CCGCCAGGGTGATGGCGGACAATCTGAGTGGC 120824 29 100.0 32 ............................. CTAACCGCTAAGAAGTGCAGAACACTCATAAC 120763 29 96.6 32 .................A........... GATGCCGTTCTGCGTGTTACTCCAAATGGAAA 120702 29 100.0 32 ............................. GCCCCGTTTGTTGTGTCCGGTTATTATGGCTA 120641 29 100.0 32 ............................. GGGCCCGGTTACGGCTGGGGTTAGGGTTTAAT 120580 29 100.0 32 ............................. TACCACGTCGAGCAGAACAAACAGGCAACCGC C [120575] 120518 29 100.0 32 ............................. GCGCTCACCAGCCACAGACGTGGGTCTTCTGA 120457 29 100.0 32 ............................. GGGCGATCAGTTCCTGATCCGCTCCGGGGCGA 120396 29 100.0 32 ............................. ATTTATTTTCGGAGTATCGGGTAACGGGGCAG 120335 29 100.0 32 ............................. GTATTTACTCGTATGAGCAATAAAAAATTGCA 120274 29 100.0 31 ............................. CTGTCTGCTTAGACTGCTTTGAGGTGCTATG 120214 29 72.4 0 T....T.....AC.........AT.G..A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ATGCTGCGGCTCATGTGCCTCGACCTCTTATCGTAACGCGGCCTCGAAAAGCGGCTACCAAAAAGTACTAACATACGGCTCCTGCAGGGGCCGTTTTTAATGATGCCATCCGCACGCTCAAGCACGGAATATCGTTAGTCTGTTCATGGCATGCGTTAGTCTATTCATGGTAAGCAGGTTTTGTGACTGCCATAACGCACAAAATTCCAGCTAAAGCCGGCTACTTACCATGAATAGACGAACAATCGCCATGAATCACCTAACGAAAGGCTGCAGCTGCCAGTCTTTGCCTAACGTTCACCATGAATCACCTAACGTTATTCACCCGGCAGTAACTCAGGGCGGCGGGAATGGATCAGAAAGTAAACGCCGCCATCCTTTTTGACTTCCGAATATGTCAGATAGCCTATCTTCTCCAGGTTTTTCATCTCGTTGCGAACCGCTAAGTTTTGGGCGCTGATCCTGGAAGTCAGGTTAGACGCTCGAGCAGGCGCTCAAGG # Right flank : GTCTTTATCAGCACGCTATGACTGAAGCCCGGCTCTCCCCATGCTGTGCGGCATCAGCCTGAAATCAGAACTGGTAAGTCACACCCATCGCCACAATGTCGTCGTTGTTAATCGACAGCGCGTTGTCATCATCCAGCTGGTTGATTTTGTAATCCACGAAGGCGGACATATTTTTGTTGAAGTAGTAGGTTGCACCCACATCGATATACTTCACCAGATCCGCATCGCCGATACCGTTTTCGATATCCTTGCCCTTAGTCTGTACGTAGCCGATTGACGGACGCAGGCCGAAATCAAACTGATACTGCGCCACCAGCTCGATGTTCTGCGCTTTGTTGGCTGCGCCCGCGACGGCAGCGCCGGTATTACGGTTGGTACCGCTGATTGGCGTCATGTTGCGGGTATCGGTGTAAATCGCCGCCAGGTAAACGCTGTTGGCATCGTACTTCACGCCTGCGCCCCAGGAATCTGCACGGTCACCGCCGCCATAGGCGCGCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124063-123484 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWTZ01000011.1 Pantoea sp. VH_4 Scaffold_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124062 29 100.0 32 ............................. CGCGCAGAACTGACGGCAGCTACACCAGAGGT 124001 29 100.0 32 ............................. CGCACTCCCCTATATCCCATGCCTACCGGGGA 123940 29 100.0 32 ............................. AGCGCATTGATCGCGAAATGGAGGCCATGATT 123879 29 96.6 33 ............................C GCTGGCACCAGCGGGTTTATCCGGCTCGTTGAG 123817 29 100.0 32 ............................. AGTTCATGCAGAAGGCATGGGAGCAGGAATCA 123756 29 100.0 32 ............................. CATTTGGGTGTGGACGTCAAAGATTGTCATAT 123695 29 100.0 32 ............................. CGAACCCGCCAGCCTAAAATTTCAGCACCAAC 123634 29 100.0 32 ............................. CCTATGCGTGGGCTTCCGAGATTGCGCTGGGC 123573 29 100.0 32 ............................. GCACCGACCATGAAACTCACCGAACCCTCGGC 123512 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGATCTGGACCTTATACCGGCCAGTGATTTCGATGAGAAACCGGTGAAGCTGAGCGCCTGATAGGGTGTTTCAGAGGAAAAGGGCGAGTGGAAACACTCGCCCTTTTTTGATCAAAGTCTGGCTGGTTTGCTGTGAAAGCGAGTTTTCAGACGGATCCCGGTCAAAGTGGAAGGATGTTAACGTCAGTTTCTGACCATTCGTGCCGCGCAATTACGCACCTCATCTCTGAAATGGGCTCGTAGCCGCGCCAGCGCTCCTGGCGTTTATTTCGGGCGGCGGGATGTTTTCCTCGTCCTCCCTTCGCAATAAGCTTATGCATTACTGCAAGGTTCTCTTTGATAGGGTGTTGCCAGTACCCTCCAGGCTCCCATTGCGGACGCTTTTTTGCGCCAGATTTTTACCGGAAAATAAATGTGCATTTGGCTTAAGTCCGCAGGTAAAATTCGGTGGAATTATCAGATGTGAAAAAATGCTTTGTAATCAGGCTGATAATTTTAGG # Right flank : ATCGTGCAGAGTCATTGAGAATTAATTGCCATGACTGTCACGTTACTTTTTGCGAAAAAACTGGGTTGTACGCGACCTGAAAGGCAATACACTGGGCACCAATCCCATGCTAAACGTACTGCTTAAAAGCATCATTTAAGCCAGATTAAACCGACCGAAGCGAATTGATAATTTAAGGCTATTGATTGATTTCAAATGTTTGCCGATATTAGGCTATACGCGCGATACGGATAAATAATATGGATATGACGGATAAAGCTGTATTAGAGCCGATTGGCCTACAGGTGAAAGATGCAGTTAAGGAGATTCTTTTCCAGCATCTCACAAAGGATAAGACCGCCGTTGCTAATCGCTCAGTTCTGTTTATGGCTGGCTCACCTGCCGCTGGCAAAACTGAATTCATAAACAATGTGTTATTCGAAGGAAAGCAAACCAACTTTGTCAGAATAGATGCCGATGATTTTCGCTGGTGGTTCCCTTATTACAATGAAAAAAATTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //