Array 1 7424-6302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASHC010000043.1 Bacteroides sp. K03 scaf_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 7423 47 74.5 30 .CCA.AGG.TTA...TT................G............. CCTTTGGCTACAAATGTCAATAGACGAAGC 7346 47 100.0 29 ............................................... CTATCTGCAATGTTCCGTTAGCAATAATC 7270 47 100.0 30 ............................................... GCGAGTCCTAATAAGTTCGTTTTAAGTGAG 7193 47 100.0 30 ............................................... TATTGTACATTAGAGGAGTGTGATAGATTC 7116 47 100.0 29 ............................................... TACTTAAAATGGGATATCAATACGACTAC 7040 47 100.0 30 ............................................... TTTCTGCTACGTATGGTGAGGGAGACGATA 6963 47 100.0 30 ............................................... AGAAGGAGATTGCTGAAACAGTGAAGAGGA 6886 47 100.0 30 ............................................... GCGAGATTTATATTACGTATAAGATTTATA 6809 47 100.0 29 ............................................... ACCATTTTGCGGTAACCGTACACAGTACA 6733 47 100.0 30 ............................................... TATTGATTTTGCCGCTTCTTGAAATGTTTT 6656 47 100.0 30 ............................................... AGGCTGCTTTATAGCCAGACACCCATGCTT 6579 47 100.0 30 ............................................... ACGTAAGCAAACAGAATATATGTCTGATGC 6502 47 100.0 30 ............................................... TTTAGTGGAGCTATTAATTGTGCAAGTAGT 6425 47 100.0 30 ............................................... AATTAGCGATATCAAAGTAATCAACGAAGA 6348 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 98.3 30 GTTGTGATTGGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GTACTCTTATACCCTAAAAGTACGTACTTTTATAAGCATTGATTTACAAGATGTTAGCTGCATTATTTGTGCTATCCATACTCTTCATAATAATAGATATAATTAGCTGATATTCTAAAGGCTAAGAGTAAAAACTACTTCTTTGAAGAGTTCATTCTTCTCTTCTTTTTCTGTGAGGGCGTTAAAGGTTTCTCTTCTATTTTAAAAGTAATAGTCCCATTAATAGTAATTTTTACGTCTTCCTCTTCGTCCACCAACTGATAAGGTGCACAATCTGAAGAACCACCATACTTATGATTCCATCTTACAAATGGATAAATAATGGCAACAGCAATAAAAATTATAATGATAGGTATTAGCATGCGTTTCTTATTTGATTTACAAATATAACATGATAATAGGAATAATAGAAATTAATAGAGGTATAATTGATCTATCATTGTAAACTCAATCAATATTAACATTATCACTACAAAAAACAATCAATAATATACCATTCG # Right flank : ACAATCTCTACTATTCACTGAATACCAACCAGTTACATCTGATCACAGAAAATAAAAAAAGAGACTGTTTCCAAAAGAAAATCCCATATTTCTATGGGATTTTTTATTTTAAAATAGTTCCAACTGCTGTCCGGGAGTATTAACTCCCTGTATCTTCTTTCCATAAAACAGTTCTATATTTCCAAATTGTTTATCGGTTATACATAATATTCCCACCTGACCATGTTCCGGAAGAAAAGACTTAACCCTTTTTATGTGAACATCAGCATTTTCACTACTGGCACAATGACGCACATAAATAGAAAACTGAAACATAGTAAACCCGTCCTTTTGCAGATTTTTTCTGAAATCCGCATAGGCCCTTTTATCTTTCTTTGTTTCAGTCGGTAAATCAAAAAGTACCAGTACCCACATAATGCGATATTCACTAAAACGATCCATTACCTCTCCGGATAGATGATATGGCGAAGCTCCCCACTAAAACATTTATAAAGTGAGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTGGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 21356-21786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASHC010000010.1 Bacteroides sp. K03 scaf_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21356 36 100.0 30 .................................... GATAGAATACGGTCGATCATTTCTTCCGTG 21422 36 100.0 30 .................................... TGGTGTGAAATATGAATTAAAATAGAATAT 21488 36 100.0 30 .................................... TGTTCCCTTCAGTGTATTTGATAACCCCGA 21554 36 100.0 29 .................................... ACCTCGATTAGTAGCCCCTCCCAAATCGT 21619 36 91.7 30 ...................CA.A............. GTGACAGCTTCTTCAACGGCATCAGTAATT 21685 36 80.6 30 ...........C.....C..A.A.A.C.......G. TCTGCTCTTCAGATTGCATCTCATTCTATA 21751 36 72.2 0 .T..C........T...A..A.A.ATA.....T... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 92.1 30 GCTGTTAAAGATACTAATTTGAGAGCTAATCACAAC # Left flank : TTTACCGCAAACATAGCAATTATTTCAGAATAATGCATTATATTTGCGCCACGAAAACGGAACAAAGCCTGCAATCGTTGACGTAACTTAATTGGGGGGTTAGCTCATCTGGCTAGAGCGCAACACTGGCAGTGTTGAGGTGATCGGTTCGAGTCCGATACTCTCCACCTCTTCTAAAGGTTATACAGCATAGTTTTTGCATCTTTCTAAATTAATCTCAAATATAAGTTATCATTATTATTGCTAAGCCCCCAAAGAACAATTTGGTATTAGAAGCACTATCAGATACTTTCATCAAGAGTTTTAAAGGAAGATATATCATCATAAAGAATATTTCATTCATCTATAGATTGATTATAACTCTAAATTTTATAGTTTCGGAACCTACAATTCAAACCACTTTTTTCATTTATAACAGAGAATAAGTAACTACCTTCACCCCAAAATTTCTATATATAAGACTCGTAAACCATTTAAAAACAGCACTTACCGAAGCTATC # Right flank : CTACACCTATAGCTCATTTAACACCATCAAGCATAAATTAACATTACAGAATATCAACGTACTACATTATCCATCATTACATCCATTGGTTAAAACAGTAATTACACGATCACAGAACAAAAAAGCCATTGGAACGTTCCAATTTAAATTAGCAGATAGGATTACAATACTTAATTATATAAAGTCATGAAAATAATAATAGCAATTATCATAGCAATAACTATATTCGCGTTGATAAAGTCAGCAATAAAAGCCAATAAGGTAAAGAAAGAAATAGATGTTGTTTCTCCGCCAGACAATGATGCGGAAAGCAATAAAGAACAAGTAAATAAAAAAGGATAAGAAAAATCAGTTAAAAATCATTACTGATCGTTCCGATAAAGGTTTTCCCTCGATCTGAAAAAGAAATTCCTTCTATTCAAACCGACGAGAACATGCGCATAAACAGAATACCTGTTCATCATCACAAGATACTCATATAAAGGTATTTACAGTATAAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTAAAGATACTAATTTGAGAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 47593-47152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASHC010000018.1 Bacteroides sp. K03 scaf_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ==================== ================== 47592 46 78.3 20 AGG.G..........T....................AG..C..C.A AATTGAATACGATCCAAATG 47526 45 87.0 20 ....................................-.A.AG.G.G GGAACAAGACGATGATGCTT 47461 46 87.0 20 ....................................TAC.A.AT.. AGTTCAAAGATGGAGATAAG 47395 46 100.0 20 .............................................. AGTTCCATATCAGAGACCCG 47329 46 89.1 20 ....................................T.A.CAA... CATATGTCCCATCTTCCCGC 47263 46 87.0 20 ......................................CGGG.C.T TTACAGTGCCCCCTCGGCTT 47197 46 84.8 0 ....................................AC..AC.TCG | ========== ====== ====== ====== ============================================== ==================== ================== 7 46 87.6 20 GTTGTGATTAGCTTTCAAATTAGTATCTTTAACAGCGTTATTTATC # Left flank : CATGGGTATTAACTTTTGCTGTTTATCAGATAGGAGGATTATTTTTATGACTTTGAACTGGCAGGAATGCGTTGTTGCTGTATTATTAGTTCTTTGTGTGATTCGCATTGTGTATGGAATTTATAATTTTTTTCGTCGCACGAAAAATAATGAGAATCCTTGTGCAAACTGTGCAAGTGGCTGTGAATTAAAGCGTCAGCTTGAAAAGAAGCAACAGGAATGTAAAGAAACCAAAAGTCGTCCAAAGAAAAATTGCTGCGGATAGTTTGGAGATTTGAAAATTAGTATTACCTTTGCAACCGCAAACGAGGAAATAAGGTTCCTTGGATGAGTGGCTTAGTCAGCGGTCTGCAAAACCGTGTACGGCGGTTCGAATCCGCCAGGAACCTCAATTATTACTCTAAATCCCTTGAAAGTACTTAACTTTCAAGGGATTTTTCTTTGTGGGGGCCATTTGGGATCATGCTTTAACAACTGAAGATGTAAAAGTATCAATAACC # Right flank : GTAAGTGCTGTTTTTAAGTAGTTTACGAGCCTTGTATATAGAATTTTTTGAGTGAAGATAGTTGCTTATCCTTTGTTATAAATAAAAAAAATGGTTCGAATTGTAGAGTTCCAAAGCTATAAAATAGGAAGATGAGGTCAACATCTAATTGCTTGCTTTTTTCATTTGTTTATGAAACGGTGGCCAAATACTAAAGATTAAAAGCTGAACACAAAAAAACATTGTGCTCAGCTTTCAGCCTGAATGTAAGAGATTATATGATATTGGTTTTATTTTTTAAGTTTCTTTCCGGGGACATCGTGTAATTTCGGACGAGTTGGGCGGATATTATAGGTATTCATCCAATTTTCAAGAATATCACGATGCTTTTGTAACTCATTATTGTAAGTATTTTCCATTGTCAGGTTTCTTGTTTCGCCTCTATCTTCTTGCATGTCAAATAGTTGTTCACGATGATTCCCTTTATCGTAAAGTACATATTTATAACGTTTGCTACGTAC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:-0.96, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTCAAATTAGTATCTTTAACAGCGTTATTTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //