Array 1 352124-351819 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKP01000001.1 Akkermansia muciniphila strain GP39 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 352123 33 100.0 38 ................................. TTCTTCTTCTTCTTCTTCACTGGAAGATTCAATATTCA 352052 33 100.0 33 ................................. AGCGCGGTTGACAGCGTGAAAGCGTGCACTGGG 351986 33 100.0 35 ................................. GAATTCAAGAGTGCAATTAGTCATCCGGCAACCCG 351918 33 97.0 34 ....T............................ CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTT 351851 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ====================================== ================== 5 33 98.8 35 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CCGTCAGGTTGTTCCTGGCGGCCTTTTTGTTTTCAATCATCTTCTCTCTCATCCCTGATCACAATCCACACGTTGTCGAGCATATCCCGCACCCAGCACGTCGTTTTACTTCCCTCACGAGTTGTCCACATCAACACGACAGCGGTATCATGAAGGTGATAAATTTGTGGGTTCTTTTTCTTCCGGTCTGCTGGGGATATAACGGTAACGGAGCCGTACAAGGGGATACAATATGTAGGTGTACACATGCGGGGCATCCTATCATGATTTTTTACCTTGTCGTTGCTCTATCACCTACTCTTTGCAGCTCTTGTGCAGCATCCCTGCATAGCTTGTGTACTTATATCAGATACTTGTCATTTACCCTCTTTTCAGCTCCGACTTTTATAAGATAGCTCATGACTGGCCTGATCCTCCTTAACTCCCGTGTTTTCTAGGGTTCCAACGGATTTCAACCCTGATTCAACTTATATCAACTATCCTGTCATTCCTCATTGGTG # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 386297-385224 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKP01000001.1 Akkermansia muciniphila strain GP39 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 386296 31 100.0 34 ............................... ATTGTTCTGGTTCCTTTCTATTGTTGATTTATTG 386231 31 100.0 34 ............................... TTGACCCTTCGCTCCCTCTCGACTATGTTCGTGT 386166 31 100.0 34 ............................... TGTAGGGTTAGGGTCGTCAGTGCCCAGCTCGCCG 386101 31 100.0 34 ............................... TCCAAATGCTGGAGACGGGTATCCATCGTCCGCA 386036 31 100.0 34 ............................... CACCTGTCCCATACATCCCGGCACCCGCGGATCC 385971 31 100.0 34 ............................... CTTTAATGGAGGCGAGCTTTCGCCCGGGATTGCC 385906 31 100.0 35 ............................... TCTTGCCCTGCGGAAGTTTGGCGTTAAGGGCATCA 385840 31 100.0 34 ............................... CTGTACGAGGAAGCCGACCGTTTCAAGGACTTCC 385775 31 100.0 34 ............................... CCGGAAGATGGTCAGTGCCCATAATGAGGGCGCC 385710 31 100.0 34 ............................... TTCGCCGGGGACTTTTGACCAGCCAGTGAGATGA 385645 31 100.0 34 ............................... CGCTACAGACCAGGACAAACTGCTCGCCGCTGAA 385580 31 100.0 34 ............................... GGCACGTCCGGATTACGGACGGTGATGCTGATTG 385515 31 100.0 34 ............................... GGAATCACGGTATGGGATGAGGCCCATGTCGTGG 385450 31 100.0 34 ............................... CATCCCCGCCCGGCCTGTGGTAGTGGTGACGCAG 385385 31 100.0 34 ............................... CGGGAAAAGCTGGAATCCAGAATGGAAGAAATAG 385320 31 100.0 35 ............................... TGCATCGAAAACGGCTTTGTAACCGAATAACAAAA 385254 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 17 31 100.0 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : TCCGCAAACTGCTCTGATACGGTAATGTAACGCGCCAAGACATCTGATAGAACTACGACAAGTATCTTATATAACTTGTCTGTCTGCCAGCTTCGTGCAGGGGGTCTGCATCGACTCTGCCTCCCCCTTACAAGCGGCCAGCAGGTCTCCCCAGTCCACCGCCTCGTCGTCCTCCCTGGCCACTCCCTCCCGGAGCATCCTCTCCCTGGCGTCGGCCAGCAGGTGCATCACCCTGGCCCGTTCGCTGGCGGGTTGGTTGGACATGCGGGGGCTGCCGGTAATCACCACGGCAAACCTGGCCGCGTAACTCTCGGCGCTTACCGTGCGGCTGGGCCAGCACCAGGCCGTCCATATACTCCACGGGGAACGTTTACGCCATGGCTCATCAATGCGGCACAATGCTGCCGGAACCCTGGCCAACACCTCCCGTCCAATCGTCCAATCTTCCGGGGCGCGGTCATCCAGGAGACTCCAATCCATCTCCCGATAAAGACGTCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 833768-834707 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKP01000001.1 Akkermansia muciniphila strain GP39 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 833768 31 100.0 34 ............................... TAATTGTTTCAACGCTCTAACAAATGATGAAAGT 833833 31 100.0 34 ............................... GGTAGTGCTAATGTATTGATTCACGAACCATAGC 833898 31 100.0 34 ............................... ATTGATAAAAATACGGTAAGAATACGAATCTGAC 833963 31 100.0 34 ............................... CGGCACCGTTTTCGTAGAGGCTCCATGTCAGCGT 834028 31 100.0 34 ............................... CCATGGCGCGGATGCGGCCCGGACGTTTGCCGAA 834093 31 100.0 34 ............................... CCTGAACTTAAAAACAACGTTCATTATTGGGGTT 834158 31 100.0 34 ............................... ATAGGCTATTGGATATTCAAGTCCGTTGTCTGCT 834223 31 100.0 34 ............................... TTTGCGACAACATATTTCAGGTCATTACCGCGTT 834288 31 100.0 33 ............................... CCGCTTGGAAGCAATGAAGATAGCCATGCAGAA 834352 31 100.0 33 ............................... TTTGTATGCTCAAGTGTTTGGAGGAAAGAACAA 834416 31 100.0 34 ............................... CCCTTGACCGTGTAAACGCGTCGGTCAGGGTGCT 834481 31 100.0 34 ............................... TGAATGGCTACGCCAAGGCTACCGTAGGCCTGAC 834546 31 100.0 35 ............................... GATAAGACAAGAACTGAAAAAACAAGGGAAGAATA 834612 31 100.0 34 ............................... CTCCAGCATCACCGGGACGTCCTCGCCGCGGATG 834677 31 93.5 0 .............................GT | ========== ====== ====== ====== =============================== =================================== ================== 15 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //