Array 1 158155-157280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000001.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 158154 31 100.0 34 ............................... CGTTGCCGGGCCGGTTGGCGCTTACGAGTACTGG 158089 31 100.0 34 ............................... GAAAGTATGTTCCGGGCAATGTTATAGGGAGGAC 158024 31 100.0 34 ............................... TATCTCGCTTCCGGCGCGTTATGTTGAAGTCTCA 157959 31 100.0 34 ............................... CTGCCGGACCTATGACATCCTACAGGCTATCCAG 157894 31 100.0 33 ............................... TCGATTTTGCTGAGTGCTTCGTAAATCTGTTCC 157830 31 100.0 34 ............................... CAATCTGACAGCGAGGTAAGCGTGCCGTGTATGT 157765 31 100.0 36 ............................... TCGGCCATCGAGGCCCGTGTCTTATCGTGGCTTGCC 157698 31 100.0 34 ............................... TACTCCAAGGCTACGACACCGGAAGAAGGCCGGC 157633 31 100.0 34 ............................... CCAAAAGTCCGAAGAGCTTGGCCATGCACCTTAA 157568 31 100.0 34 ............................... CCGTAGCCCCTGGTTTTGTCCCAATATGTGCAAT 157503 31 100.0 34 ............................... CGATAACGGGGCCCATACATTTGACTCGAACCAA 157438 30 96.8 34 ..................-............ GCAGTGGCTTGCGCAGGGAACTTTCTAGTCCCAT 157374 31 96.8 32 .........C..................... GTATTACTTATTTTTTTATTTATCATACTTTT 157311 31 80.6 0 ..........TCG............G..GG. | T [157295] ========== ====== ====== ====== =============================== ==================================== ================== 14 31 98.2 34 GTCGCACCCAAACGGGTGCGTGGATTGAAAC # Left flank : CCGTCGGCACAGGACGACCGGCAAGACAAATACCCTCGCCGTAAGGCAGGAAACGCTCTTCGCCTCGGCAGGACAAGCCCGAAAAAGAATTTGTATAAAGTATCTGCGTGATTTTCATAATGGTAAAGCTCCTCATGATGCTGGAATGTTTCTATTATAAGTCATTCCGGAAGAGAATGTAAGGAGGATCAAGAGAAAGTTCGGAGAGGACAGAGACATTCCTGACAGGGAGTTCTTTAGTACAGCGTGAAAGATGAGGAAAAACTGATTTTTCTTACAGAAAGAAAAATCACGTGTGCTATAATAGTCTTAACAAAGCCCGAAGAGATAAAGACGATGATAAATGCGAATGGGAAGTGACCATGATAATTCCCCGTGAAAGGAGGAGATAAAATAGAAAAATGTAAACCTTGTCCCTAATCACAGTCGAATAAGACTCGGTAGTGGGAACTTAGCTACGTCGATGTAAAAGAAAGAAACGAAAAAATAAAATTTTCGCT # Right flank : CGGGTTTAGATGCCCTAAATTTGGGCACAAAAAGAGGCTGTACGCCGTGATTTTGTTTTTCACGGGTACAGCCTTTTTGCTATCACCTTATAAGAAAATATATTTTAATACGAAGATGACGGCTAGGACGTACATGAGGAGGGAAATTTTTTCCCGTTTGTTGGTCAAGACGTTGATGAAGACATACGAGATAATGCCGAAGGAGATGCCTTCTGAAATGCTGTAGCAGAAAGGCATGGCAATGATCGTAATGTATGCCGGAATGGATTCGCTGAAGTCATCAAAGTCGATGCCGACGACGGCGGTCAGCATGAGGAAACCGACAATGACCAGGGCCGGTGCCGTAGCAAAGGCCGGAATGGCCATGAAGAACGGCGATAAGAAGAGGGACAAGGCGAAGAGGATGGCTACGCAGACGGCAGTCAAACCGGTGCGGCCGCCTTCACTGACGCCGGTAGCACTTTCGACGAAGGTCGTCGTCGTGCTGGTACCGAGGACGG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCAAACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 115966-116530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000004.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 115966 32 100.0 35 ................................ ACATAGGCTATATATACAAACCCACCAGATGGAAC A [115981] 116034 32 100.0 35 ................................ TTTATACCACCACTCCTGGGTTCTTAACAACAGAT A [116049] 116102 32 100.0 34 ................................ AATCTTGCTCTCTGTGAGCGTATGCAGACCATAA A [116117] 116169 32 87.5 34 ........CTT..T.................. TAGGTTGATTTTCTTTAACTTTATCATGTAAATC 116235 32 87.5 34 ........CTT..T.................. TTGTACAAGTTGATTGCCTGCCCGGCTGCCAGTA 116301 32 87.5 35 ........CTT..T.................. ACTGTGAAAATTGCTTATTTCGTCCTCTCTGCGGA 116368 32 84.4 33 ........CTT.GT.................. ATTAAGTGGGAAATGCATGTACTGTGGCCCAAC 116433 32 100.0 34 ................................ GCAATCAATAATAGAGGAGGTGGCACGCATGAAT A [116448] 116500 31 87.5 0 .....-..C.T..G.................. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 92.7 34 GTCGCACCTCGCAAGGGTGCGTGGATTGAAAC # Left flank : GTCGGCCCGTCCCGAAGGTAGTATCGAAATGACGAAATTCTATTGGGTCCGCCACGATAATAAAACGGGCAACGCCTCATCGGCTCGCGTCCATCGCAGTGTCACGGCCAGCTTAAAAGAAAATGTTACGGCAGCCCATACCTTTGAGGACTACGTCATCGACGACAGCGCCTTGAAGAATATTGCCGGACTCAACATTGAAGTCTATCAGGAAGGCGAAAAAATCCAGTAAGGGATGCTGGAGAGAAACCGAGAAATTTGACCATAGTCGGCTAACATGACGTTACATATTAACCCTATGACGGAACTTGTGCATCAGAACTGGGGGAAGGCATAGACTGACAGTGCGAAGATATAGTGAACATCGTATTGGCCGCCAAAAATCTCGATTACGATAGAAAAAATTGATTAAATCCCTAATTTAGTAAGAACAAACTGTATCAGTGGGGAAATATCCCCATCGATACACGCAAAAGAGACTATAAATATGTCCTTTTGCT # Right flank : CAGCTATGATCAAGGAAGCACATCAGTTGTTATTTCGATGCATAGAAGGAGGTTGAAACAAATGATTGAACTGATAGTCTTATACTTTATTGTTGATTTCTTCACTGTACAAGCTTATCTGACTCAACGAGCCGTACTTGATATACAACGGGCGCTTATGTTACCCTTTGATTTCAGGCCAATTGTTTGCCCTCTGTCAAAATGGTACAAATTCCGTAGGATACCTCAAGTCATTGACTTTGCTATTCTTATCTTCATAGCGTATCAGTATAAATGGTATTATGCAGCAATTTTACTTATCCTTGATTTTGCAATAACAACATTCATCCCTGTTCCAAAAAGCAAGATGGATTGGGCAAAAGATAAAATGGATGAAACAGCACTACAACTCGCGAAGTAAGTGTTAATGTTCTTTATCCATAAGTTCATGGATTGAAACATTTACCTTGAGTATTTGTTGTCGGATTGTTATAACGTCGATGAACGTCTATTGCAAGTTG # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCAAGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 117555-117915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000004.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 117555 33 97.0 32 ................................A GCATATTCGATGTCCGATGCATCATACACCAT 117620 33 100.0 32 ................................. ACAGTGGGCAGATGGATTATGCCAAGAAAAAT 117685 33 100.0 34 ................................. TCCGAGAAAAGAAAATATTCTGCGGCCAAGAATA 117752 33 100.0 33 ................................. ATCGGCACTCATAGACGCACTAAACTATGGAGA 117818 33 97.0 33 ................................T GCCCTCGCTTGGTACACGCTACCCGATAGCCAG 117884 32 90.9 0 .........................-.....TA | ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.5 33 GTCGCACCCTTCATGGGTGCGTGGATTGAAACG # Left flank : TATACAAGGAAACTCATCAGTTATTATGTAGATGTATTGAAGGATATAGGAAGGTGTTATTATGAATGTTCTGCGTTGGATACTTGTTTTACCGTCTTTTATTGTTTCTTATGGCCTTGTTCGTTTTATTGCCTTAGCACTCATTTTAATCTTTGCCGGGACGACGGGCCTTCTCTATGCATTTTGTTCCATCGTTGTTGAAGGGATACTTGCCACCATGTTTGCACTGGCCGCTTCCGTTTGGGTAGCACCGTCGAACCACGACAAAGTAGTATATGTGTTGTCGGCATTCGTCGTAATTGTATCAGCCATTAGCTTGTTCATGGGAGTTGGAAAATATGGTTTTGGAAATATGCCGGACTGGCAAGGAGCTATCACGGTTGCAGCAATGGCCGTTACTTGTTTATATATATCTCGTCTCACGCACAAGGAAGGGACGGTAAAAGTTTTCGGAAAATAAAAAGCCCACATAATAAGTATCGTGTGAGTATAATACTATG # Right flank : ACCCAGAACTTCGGATAACGTTAAATTATCGTAAGTTGCACTACCATGTGCGCGAATCGAAAATGGCAAAAAGAATGCCCTCTCTACATCAGTAGGGAGGGCATTTCTATGCTTGAATCAGTCTTTGAAGTAAGGCTTGAATACGGAGCGATTCGGTTCTTTATGTTGTTTTTTTTCGGAGCGCTGGTTGTTGCGGAAGGTGCCGTGGTTATTGGAGTCGCGGTTTTTAGGAGCGAAGTGACGACGGCGTTCGCCTCGTTCTTGGCCGTCTTCTTTACCGTTACGGCGGTCTTTCCGATTGCGGTCGTTACGGCGATAGTTGCGGTCGCGGTTATTTTTCCCTTGGCGGCTGCGATGGACGCGGAGGGGGGCTTCTTCGGTAATTTTGACGGGCGTCGTGTCCGGTTCTTTCGTGAGCAGCTTGATAGCGGCTGCGACGAGGGACGCCGAGTCATAGTTGGACAGAAGTTCTTCGGCATTTTCTTTGTAGCTGCCGAAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 67-917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000007.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 67 36 100.0 37 .................................... ATGAAGAAGGAGACGACATAAGGCAGTAAATTACGAA 140 36 100.0 37 .................................... CTGTATATGGATTACAGGGGCTTGGATCTTCTAGTTT 213 36 100.0 38 .................................... AGCCATCTGCTCCGCGCGAACGAATGCCTGATGAATGA 287 36 100.0 39 .................................... TGAGATCATTTCGACTTCAAAACCTTCAAATTTTACGTT 362 36 100.0 39 .................................... TGGCTCATCGCCAAATCTATTAATACTACCATCAAATCC 437 36 100.0 38 .................................... AGGAGGTACTGCCGTTTGCATACCTTTCGTATGTAGGG 511 36 100.0 38 .................................... ATATCATCCCATAGGCGATTCGAAATACCGGCTTCCTT 585 36 97.2 39 .....................C.............. ATGCCACTGACTGAACATCTTTCGGAACGAGACTTCCTG 660 35 88.9 38 T..-C.T............................. TGTTCAGACGGTTCTACACCAATATATACAGAGTTTCC 733 36 94.4 39 ...G.C.............................. GCGTACTCACGTTCTTTTGAACGCCGATTGTATTTGTCG 808 36 94.4 38 .....C.........C.................... GTACTGGTCGAAATACGACCAGAATGGACGAGCACCAA 882 36 91.7 0 ...G.C.....T........................ | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 97.2 38 GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : AAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGGGATACAGAG # Right flank : CAAGATGACGGCATAACCGTCGAAGTCGAAGTCGTCGGCGTACCAAAATCCCCGGAGTTACATGGACTCCTTTTAGAAAAAGGAGTTTGTATTATGGGGGGGCTGAAAACTGAGTCTTGCATGAGAAAAGCCGATACCGTCATCTATCTGGATGCTGGTGTCGGCTTTTGTCATGGGAGTTATTTTTTAGGTATCAAAAATGTGCGTACTTGTAAATTCCATACCTATAGCTATAATAAGGATAACCCGATGAGGGGAATCGTTATGCGAAAAGGAGACTTGAACATGGAATTTGAACAACTGATGAGAGATCGTTATTCGGTCCGTAAATTTTTGGATAAAAAAGTAGAACCGGGACTCGTTGAAAAGCTGAAGGAAGCCATTATGCTGGCACCGAGTGCCGTAAATCGCCAGCCTATCCGGGCCTGGGTCATCGAATCGAAAGAGAGACTCGAACAGATTAAGGCCATTACGAAATACCACTTTCAGGCGCCCCTGAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2392-2646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000007.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2392 36 100.0 37 .................................... CGTGTTACGGGCAATCCACCAATGGATGGCAGGATTG 2465 36 100.0 37 .................................... TTGATTCCGGTAAACGTTGACGGATTTTCGAAGCAAT 2538 36 97.2 37 ...A................................ CAACGAATTGCAGGACTATAGTTGCGGTCTGGACCAA 2611 36 97.2 0 .G.................................. | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 98.6 37 GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : TCTTGTCGTCCTTTAGCCATAAAGGCTTATGTAAGAAAAAGAGAAGCAGGAAACTCTTTGCCGTTGTACCTCCCTAAGAGCATGGATTGAAATAACCTTTTTCTTAAAGGCGGGATACGCTAGAGATGCGAGTTAGAAGGTCGGTTTAGAGATGGGGATAATGGCGGCCAAGATCCCAAAAGGCTTCCGGCGCCTGATTAGAGGCATCTATGGAGAACATCGAGACCAATCCCTTCGCCGGGAAGAGTTTGACAAGAAAAGACGAAAAACGTATACTTGAGATAAGTCAAGGTACGACTGACCTTTGGAAAATCGTTTTCAGGGTCAAAAACCCCGGAGGCTTGAAAATTTTAAAACCGCGAAAAACGGCATAACCAAGCCGATAATCGACACTGCCTAAATTTTATTTTTCACCCGGGTCAGCCAAAAAGGCGAAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGGGAGATAGA # Right flank : CTTTATGAGTTGAGCGTTACAGTATGACGTTTGGTCGTCGGCGTACCAAAATCCCCGGAGTTACATGGATTCCTTTTGGAAAAATGAGTTTGTACCATAGGGGGACTGAAACGCGGTTTCTAAATACCTTGGACGGAGGTTTGTTGACGCGTCGGCGGGCGCGTAAAATTGAAGATGGCATGAAAAAACGGTACCGGCATCGGTGAAGGATGTCTGGTACCGTTTTTGATGGTGGGCGTCATGTTGTGGGAGTCCGAAAACGGACAGTGCCGTCTGTGCCAAGGGGGACATGAGCCGTCGAATTTACAGCCGAATATGGGCTCGGGCTGACGTCTCGGAAGGGGGCTACAGGGCTGCAGAAGGTTTGAGGCCCTTGTGCGTGCTCGGGCTCGTCTGATTCCTTCGGTCCTTAGAAATGACGGCCTCTTTGTGAGGATGAAGGAAATGAGAAATATTCCTCTTTTCTTGATACCATAAGGTATCTGACTATATGAGTTTAC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27385-28047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000007.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================================================================== ================== 27385 36 100.0 37 .................................... TGGCTACGTTCTACGCAACGGAAAATGGCGATATCGG 27458 36 100.0 36 .................................... AGGTAAAACAACGTTGGTCGCTGATAAAATCCACGG 27530 36 100.0 36 .................................... GTTAACGCTAATAATTCTCATGACTTTCCTCACTTT 27602 36 100.0 152 .................................... GGGGTTAAGTTTACAATTTTTGCGTTTTTCATGTTATTGCCGGCGTACCAAAATCCCCGGGTCTAAATAGACTCCTTTTAGAAAAAGGAGTTTGTACCGTAGGGGGACTGAAACGCGACGCCCAAAATTGTCTGCCCGGCCTTGATGTTAGC 27790 36 97.2 38 ...................T................ TTATCGCCGGCGTTAGAATAGGCGATTAATTTTTCAAT 27864 36 97.2 37 .....G.............................. CGTTCCGGCATCGCCTCAGCGACCATCCTGGATACGA 27937 36 94.4 40 ...G..........................G..... TCCACGATTTCGAAGTTCTTTCCTAGGACCCATTCGAGTT 28013 35 86.1 0 ..T.-..A...TT....................... | ========== ====== ====== ====== ==================================== ======================================================================================================================================================== ================== 8 36 96.9 54 GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : CCCCGTAAGGGGACTGAAACTGTACATAACAGTAGACTCTCAACTGAATCGTCATACCGTCGCATCATCTAATTCCCCGGAAGGGGACTGAAATCTTGTTTTATGCGGAAACCCTGCAGACGCGAGTTAAAAGGCCATCTACGGTCGACTCATATAAACAGAGGGCTAAGAGGGAGAAGGCGCTCTTGCGCCCGATGAGAGGCATTTGCGAGGACATTCGAAGATGAGCCCTTTTCCGAAATTCGTTTGACAATAAAAGTCGAAAAACGTATACTTGAGATAAGTCAAAGTACTACTGACCTTTGGAAAACCTATTTCAGGGCCAAAAAACCCCGTAGGTTTGAAAATTTCCAAAATAGCTACAAATGGCGTAACCAAGCCGATAAACGACACTGCCTGATTTTTATTTTTCACCCGGGTCCCCGAAAAAGACCAAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGGAAGACAGA # Right flank : CCGCCAAACAAGTTTAACTAGCAATACTAATAACGCCCACATCAGAGTACCAAAATCCTCGGATTTAACTAGACTCTTTTTAGGAAAAGGAGTTTGTACCATAGGGGGGCTTAAAACTAAATATTGCATGAGAAAAGCCGGTACAGGGCATCTGTCAGTGATGTCTTGTACCGGCTTTTGTTATGGGGGTTACCCTGTTGAGCCGGCAACGCCTGCGAAACGATAATCTACTCGTTATGCGGGTGGGGTCCCATCGTTATAAAAAAATCACCTTTCCCGAATAATAGAGGTGTCTAAGCCACTATTACATTAAAAGGAATGGTGATTGATATGGCAAAGAAAGTCAATGACTTAGCCCATACGAAATGGCTGTGCAAATATCATATCGTCTTCAGACCTAAGTATAGACGAAAATTATTTTCAATCCATATAGACGTGATTTGGGAGAGATACTCCGGCAATGGTGTAACTATGGGGGGAGATATTGGAAGGGCATCTCA # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.72, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 74566-73427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000005.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 74565 31 96.8 35 ........T...................... TTTGCAACTTTTACAATCGTGCCGGAGTACAGGCG 74499 31 100.0 34 ............................... CCGGAAGAGATGACGGAAAAGGCTAAGCAGGAAG 74434 31 100.0 35 ............................... ATCGTGACATCGCCATTAAGGGTAGACGTACCGTC 74368 31 87.1 33 .......T...CG.A................ ACAGCCGAATTCAATAAAGCCCGTAGTGGATTC 74304 31 87.1 33 .......T..CAG.................. TTGGAGCCGGGGAAGCGCGTTAATCAAAACTTA 74240 31 71.0 34 ........TC.GCA...A..G..G...T... TGCTGTACAGCCAGATTATTCATGTCTGGAATCA 74175 31 71.0 36 ....T....CCG...ACA.....T.....T. TTGGTGCCGAGGGAGGGACTTGAACCCTCAACGTGT 74108 30 74.2 33 ....G.AT..G.-.A...G...A........ TCAGAATATGCAGAAGAGGCCAATGTTACTACA 74045 31 83.9 34 ........T..AC....AT............ TGACATTCAAAACTGGGATAGTGGAGCTAATTAC 73980 31 96.8 36 ...........C................... CGGGACGATTCGGGGCATATTGTTAAATGGAGCAGT A [73968] 73912 31 93.5 33 ...........C..................T ATTGCTGAGACTTACGTACCGACCTACTATTTA A [73899] 73847 30 74.2 33 ...C...AACA.-.A......A......... AAAGAAGTCTATTCCAATCTTACGATTCCCCAG 73784 31 77.4 34 ....TG....CA....G...G..G....... TTCATGATTCTGGCTATTGGTGCAGGGCTGCATC C,T [73766,73776] 73717 31 83.9 33 ....T...T.CC.A................. GATTTGATTGGTGGGGTTGGATGTGAAAAAATC G [73705] 73652 31 100.0 33 ............................... TGTTCAGCCGCTTTTGCTTGTGCATTGTACATA 73588 31 96.8 34 ..........G.................... ATCTGCTTGATGTTGGCGTCGTAATCCTTCTGGC 73523 31 93.5 34 ............G...G.............. TTGGTCCTCAGGGGTCATACCTTCGACTGGTTCT G [73505] 73457 31 90.3 0 .........A.GA.................. | ========== ====== ====== ====== =============================== ==================================== ================== 18 31 87.6 34 GTCGCACCCTTTTGGGTGCGTGGATTGAAAC # Left flank : AAGGCATATCCGTTTTTAAAGATGATTTTTATAAAGGGGAATTGACTAAATAAAAAAAAGTCCTTGGATTCGGCACCTTCCCTATAACGGGAGGACTTACTACCAAGGACGCTATTAACGGATTTGGCAATATTATATGTTCTTGAAAAGGAACTGTCAAGCTGCAGCAGTAACGGCGTTATGGATGCGGTGGCGTGAAGGCAGGATATTATGGTTTTAAGTAAAATGGTGCTATAATGAAATTAAAAGTACTGGGAAATAAACCGTTGAGCTGCGGGGATGCTCGGAGCATAGGAAGTCATATAAAACTATGGTGGAAAGCATGCCGAGAAACCGTACGCAGTGCCAAGGTATAGTGAACATCCTTTTTGTCGATTAAAAACCATGGTGATCGCAAGGGAAAATTGAGCAAATCCCTGCATGAGTAAAGAAGAAACGTGTCTGTGGGAGCCTATCCCCATAGCTGCAAACAAAAGTGGCTGTAAGAAAACACTTTTGCG # Right flank : ACGCAAATGTCTCCAACATTTGCCCAGCGCTTTTGCCGCACCTTCATGAGGATGGAGTGAAAGACACCAGACTTAGGATCTGGCGTCTTCGGCATTGTCATAGGGGCGTGCATTAAATCTTATCTTATCACATCGTTTTTTGCTTCTTTTTCAACTTTTTATCTTGCTCCGCCTTTCGTTGACATGCTTCTATTTGTCATGCTATAGTAAGAACGGTATAATATAAGGAATAGGTCAGGTGTCTCAGACTTAATAGAGAAGCCGGTTCAATGCCGGCGCGGTCCCGCCGCTGTAAGGTGGAGCCAGGCTGCATGATGTCACTGTACGTTTTGTATGGGAAGGCGCAGCTTTGGCCATGAAACCAAGCCAGAAGAACTGCCTGACGGATAATCACCGATAGACCTGCGAGCGATGGGAAGGAGATTGTACGGAGCATATTCGGGGACTGTCGTCTATACGACGGTCCTTTTATCTTTGCAGCCCTTCTCTTGCAGGTCGTT # Questionable array : NO Score: 7.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.38, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTTGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [22-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 105209-104952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000005.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 105208 36 97.2 38 ...................................G GTTCCAGGCGTCGCAACAATCGTTTAAATATTTCATGA 105134 36 97.2 37 ...................................G ATATTTTTGGTGGAAGCACAGAAAACTGTTCTCCGCG 105061 36 100.0 38 .................................... ATGGATCTTTAGAAGAACAATCGGCAAAATTTTCTACC 104987 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 98.6 38 GTTACATTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : CAGGCGCGGACCTTGTCGTGAAGAACCATAATCCTTGAAAGGGGACGGAAACCAACAACAACATATATGTTTCAATCCTCCACACTCCCTCACGGTTAAGAACGATTGAACACACTCCTTTCTTTGTGAGAAGGGAGATTTTGTAGGGAATCCCCGCAAGGGGACTGAAATCGGAGAAACTACTTTTTTATGATGTACAGCAATGTTGGTCACGGTACTACCATCTCCGGGACTGCTGTTATGGCTGCTCCTGGGGAGGCTTTACGGGATGATCTTGCGGTTGTTTGACAATGCTTGGCGGAAAACGTATACTTGAGATAAGTCGAGGTACTGCAGAGGTTTGAAAATTTTCAAAACCTCTAAAAATGGCGTAACTAAGCGGAAAAACGGCATCGCCTGATTTTTATTTTTCACCCGGGTCCCTGAAAAAGGAGAAAAAAGCCCGAGGTTTGAAAAAATCGCTTGTAGGCCCGCTCCCAGAGCGGGTACTGGGAGACAGG # Right flank : CGCCAAACAAGTTTGGTCAGCCATACTAACAAGACCGTCACATTACCCCATTCCCCGGAGTTAAATTGCCTCCTTTTTAGAAAAGGAGTCTATCAATAAGGGGCCGGTATGCTACTAGGCGCAAAAATGAAGAGTGCATGAGAAATGCCGGTACGGGCATCTGTTTGTGATGTCCGGTACCGGCATTTGTATGTTTGGGTTATTCTATTGATTCACGGGTAGGGGTGAAATGATGGTTGTCAGTCCTAAATGGAGGCGCTTCGGAGCATAAGTTGAGGTTTGCTTTTTCATGGGGCAAGGCTTTTTTTATGACAGATAGGAGATGTATGACCGATTGAACCGGGTGTAAAGAAAGGGCTATCAGACAAGCAGCATATTTGACAGGGACATATTCTGTCATGATGGTTCTGTATAATAGAGCTTATAACAGCAATGGAATTCGTGAGAAATTCGCCAATTGGGAGGAATGGGATATGACGGTATCGAGATTTCGTTTTTTG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 108672-107882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000005.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================================================================================================================================================================================================== ================== 108671 23 95.7 53 ........T.............. TTTTTTATATCAGTTGGCAATTCGTCGAAGTGGTACAAAGGGTGAAGAACCTC 108595 23 100.0 48 ....................... GAGTCCACCCGGAATTTTATAAAGGTGTCTTTTACGGTTAAGAACCCA 108524 23 95.7 51 ..A.................... ATGTATACGATGTCGCACCTTGATTCAAGTTCTAATAATGTTAAGAACCAG 108450 23 78.3 229 ........T......C...T.TG CGTGCTGCTAGGTGTAAAAATGAAGAGTGCATGAGAAATGTCGGTACCGGGCATCAATGGGTGATATCTTTTGTTCTGTCACGATGTGATGAACATGCTGGTTTTGAAGATTTGTGATAGACATTTTCACAGAAAATCCCGAAAAAAGCAGAAAAATAAAATCCGCCCCGCAAATGCCATTTTCGATGGCACAGTGAAGCCATTGGTAAGGGGTGCTGTTAAGAACCCT 108198 23 100.0 51 ....................... TTTTTTTGTTGTATTTAGCAATGACTTTCGGCGTGGCCTGTTAAGAACCTC 108124 23 100.0 51 ....................... CGTTTTGCTTCTGCTACCAACATTCGCCGGGATGCTACAGTGAAGAACCTC 108050 23 95.7 50 ........T.............. ATCTTTTTCATCTCCTTCCGATTACGATTTTTTGGCCCGTGAAGAACCAT 107977 23 95.7 50 ....T.................. TGGTTGAATTGTTCGAGGGTTACTTTGTCTCCGTTTTGGTTTAGAACCAC 107904 23 78.3 0 ........T......C...T.TA | ========== ====== ====== ====== ======================= ===================================================================================================================================================================================================================================== ================== 9 23 93.3 73 AATCCCCGCAAGGGGACGGAAAC # Left flank : GCCTCATCCCATGTATATGGGCGGAAAAATCAGTCGTACCCTCTATAAACACGGCCTTATCTCACGGAACATCAAAATTAAGATACAGCCGGACGAAGCAATGAACAAACAATATCATATTGCCATTCCTAAATAGGGCTGGTGGAGCGTAAAGGAGACTTGCCTTTTGATGGGAGGGTCTCCTTTTTTGCTCTTGGACAAAGGTCAGAATGGGCTCTTTTTCAAGGAGCACATTTTTAAAGGAAAAAGTGTTTCATAGGGCCAGCATCAGAAAGTATTCCGAGATTCACCAAAGAGCTTCAAGAATATGGTATAATATGAATAGATTCATGGATTTTATACCATTTCGCCCCGATGTGATGAAAAGGCGGCCTTTGAGGATTTTTGAAAGCTAATTTCAGCGAAAAAGCAGGAAAAATCCGAAAAACAAAATCCGCCCCGCAAATGGCCTTTTCGATGGCGTAGTTAAGCCATTTGTAAGGGGTGCTATGAAGAACCAC # Right flank : TTGCTGGCGTAAAATGAAGAGTGCATGAGAAAAGCCGGTACGGGCATCTGTTTTGTGATGTCCGGTACCGGCATTTTGTATGTCGAGGGGAATTTTGTTGAGCTGGAGGGGCTGCGAAATGATTGTATTGCCGGTCCTGTATCTGGGATGACGGAGCATATAGAGAGGCTTGCCTTTTGACGGGCGAGTCTCTTTTTTGATTCCGGGGAAGTTATGTAGAAGTCGGGAACTTAGTATGGCTAATGATATTCATAAATATGATATAATTATCGTGAATAATTTATTGAATCTAAAAATAGAATGTTATAGACTGCCAGCTTTATGAGTGGAATGGTGCAGTCGTGCTTGATGATGCGTATTTGGTAAGCCGTGAAGGAAGGTCCATGAGAGAATAGCTATGCTTGAGGAAGGTTGGTATGATATACTGAAAGATAGAGAAAGGTTCGGTTGAAAGGTTGTCGATGGAATTCTAGCGTTAGAGAGAGTTATTATCATACTAT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-2.84, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 266-656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000018.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 266 23 100.0 52 ....................... AGGAAAATTCCGGATACCACCCGTATTTATAATCTATAAGGTTACGTTACCA 341 23 100.0 51 ....................... ATCTTGGCAACATTGTTATTATTGACGAGCGTCAATACGGTTACGTTACCA 415 23 100.0 48 ....................... GGTCAAGCGTTAAGCTGATATTATAGTTGTTATATCGTCAGCGTACCA 487 23 100.0 49 ....................... TTATATAATTCATTTGTATACTAAGAAGCTAATCTCCGTTACGTTACCA 560 23 100.0 51 ....................... GATGCGCCGGCAACAAACTTCTGTACGGGATAGCCTTTGTCAGCGTACCAA 634 23 73.9 0 .....T.........T...TTTT | ========== ====== ====== ====== ======================= ==================================================== ================== 6 23 95.6 50 AATCCCCGTAAGGGGACTGAAAC # Left flank : CAGCGAAAAAAGTATACTTGAGATAAGTCAAGGTAATACTGACTTTATCTGACCTTTGGAAAACCTATTTTGGAGCCGAAAACCCCGTAGGTTTGAAAATTTTCAAAATGGCTACAAATGGCGTAACGAAGCGGATAAACGACATGGCCTGATTTTTATTTTTCACCCGGGTCAGAGAAAAAGGCGAAAAAAGGCCGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGAGAGACAGGGGTTACGTTACCAA # Right flank : TAAGGCATGAAAAAGCCGTGGATTTATGTTTTTTTCATAGATCCATGGCTTTTTTTGGCTGTATTCTATTCGCATGTTGTTTTTTCAAAAAATGGAGGACTCTGTTTTATTCAGTGTTTGCTTGTCGTGCCGGAAAATGCTTTTGTCTGGGATTTCGCTAATTGGTTGGGATATGATAGAATTAAGATATAATCATGGAGGATGAGGTGAGGTTATGTCTTATAACTTACCGGATGCGGTTTTGCGGGATATTTCTCGGTTTGCTGAAAAACATGGTGTTCGTCGAGTCCTTTTATTCGGATCTCGCGCCCGGGGGACACAGTCGGAGAGAAGTGATATCGATTTGGCGGTCTGCGGTGGAGATTTTGATGGTTTTTATTGGGATATCAAGGAGCACACGCACTCTCTTTTGATGATTGATGTCATTAATTTAGACGCAGGCATTTCTGACGGCCTGAAAAGAGAATTGGAAAGGGATGGGGTGACGCTGTATGAAAAAG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.26, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3001-3464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQH010000018.1 Megasphaera massiliensis strain MSK.20.21 EBODHCGN_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 3001 23 100.0 51 ....................... GAGGTTGCGAAAGTAATAATAGTTGTCATGATGTGTCTCGCTACGTTACCA 3075 23 100.0 48 ....................... ATATCATCGATGTTCTTATGAATTTCATCGATATTAGTTACGTTACCA 3146 23 100.0 52 ....................... GCGCAATGGCAGCAACTATAATAACGAAAAAGCGGATGATGTTACGTTACCA 3222 23 100.0 51 ....................... TCCCAATAATAGCCATCATATGGTCTATCAGACCATACTGTTACGTTACCA 3297 23 100.0 48 ....................... AAACTTAAAGGCGTCTGCCAGTGCGTTGGCATGCTGTCAGCGTACCAA 3368 23 100.0 51 ....................... AATGTTAAGCCGTAAACCTTAATCTGCTGTAAAACAGAGTCAGCGTACCAA 3442 23 95.7 0 ...............G....... | ========== ====== ====== ====== ======================= ==================================================== ================== 7 23 99.4 50 AATCCCCGTAAGGGGACTGAAAC # Left flank : CTGAAACTTTTAAGTTTGTTAAATAAACTTTCTCCAATAGTAATGGTTCAATTACCAAAATCCCCGGAGCCATTAGACTCCTTTTAGAAAAAAGGGCGGGATATTTTTTGTAATGGCCGGTACAATTTTTTTCCTTTGTGTAAGAAACTTGAATCCCTGAGATGGACTGTGATGGCCTTTCTTGGGGATTTGTTCTGTTTGGCTCCTTCGTTGTGGTGCAGTGGTTTGACAAGGTACAGCGAAAAAAGTATACTTGAGATAAGTCAAGGTAATACTGACTTTATCTGACCTTTGGAAAACCTATTTCAGGGTCAAAAACCCCGTAGGTTTGAAAATTTCGAAAATGGCTACAAATGGCGTAACGAAGCGGATAAACGACACTGCCTGATTTTTATTTTTCACCCGGGTCCCCGAAAAAGGCGAAAAAAGCCTGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGGGGGACAGGGCTACGTTACCA # Right flank : CTAAGCACAAGAATTGCAAAAACAAAACGATAGAAGCGCGTCAGCGTACCAAAATCCCCGGATTTAATTAGACTCCTTTTAGAAAAAGGAGTTTGTATTATAGGGGACTGAAACTCGAGCACGTACTGGCATTCGACGTGCGTACCTCCCGTCAGCGTACCAAAATCCCCGGAGCTAAATGGACTCCTTTTTTAGAAAAAAGGAATTTGTACCATAGGGGGGACTGAAACATCCTTCTAGGCGACTAACCCAGGATTCGTGCCATAGGTCGTATTACCCCAATCCCCGTAAGGGGACTGAAACGCTATTCTCTCGTCTCGGCAGCTCATTTTTTCCGATGTTACGTTACTAAAATCCCCAGGTCTAATTAGACTTCTTTTAGAAAAAGAAATCTGTACCATAGGGGACTGAATCTGACGCTCTGATGTTTCTACTTTTGTCGTAGGGTATTGGCTGCATGCCTTGCCTGTTGGGGAGGGATATTCTTACAAGGCCCCGGA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //