Array 1 37-1416 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOXI010000001.1 Campylobacter fetus subsp. testudinum strain B1-01 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 37 29 100.0 36 ............................. TGAATAAAACAGATAGTTCTGTTACTGCTAATTCTA 102 29 100.0 36 ............................. TAAATTTATATCTAAACTTTCTACAGATTCTTTCGT 167 29 100.0 37 ............................. TAATTCTCTTTATAGGGATAGATGTATGAGCGAAAAT 233 29 100.0 37 ............................. TATTTTTGACGAATGTGATCCAGACGGAGATGCGGAA 299 29 100.0 37 ............................. TCATTTATTAGTTTTTTCTCTAAAGCCACCAGAGCGT 365 29 100.0 37 ............................. TTGCTCTATAAGACCATTTTGTATAAAATGGTGGTGC 431 29 100.0 38 ............................. TACAAATATTTTTGAAAGCAAATACTTTGTCAAAATTT 498 29 100.0 37 ............................. TTAAAAATTGCCGTTTGCATTTTCTTTAAAGAAATGC 564 29 100.0 37 ............................. TTTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 630 29 100.0 37 ............................. TTTATAAATAGCCTGTTCTATTTCACTTATCTCTTCC 696 29 100.0 38 ............................. CTTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 763 29 100.0 37 ............................. CGTTTTTTCCTTTAAAATATCGTGAGCTTCCTCTTCC 829 29 100.0 37 ............................. CTCGCCTATGAACAGAGCTAGTCCGTTTTCATTTATT 895 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 960 29 100.0 37 ............................. CATGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 1026 29 100.0 36 ............................. CATGATACAAAGCGTGGTTGGTAGATATTATATTTC 1091 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1156 29 100.0 37 ............................. CACGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 1222 29 82.8 5 ..................A..ATA.C... TTTAA Deletion [1256] 1256 29 96.6 37 ............T................ CACTTTAGTATTTAAATAAGCCGTATTAAAAGCGTTT 1322 29 100.0 37 ............................. CCAAAGCAGGTTTTAGTTCATCACGTTAAGCCTTCTA 1388 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 99.1 35 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : TGGTTGGAGAGCAAGGGATACAAAGTGGATCTAGTAG # Right flank : CAAGTTC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 37-1312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOXI010000033.1 Campylobacter fetus subsp. testudinum strain B1-01 contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37 30 100.0 36 .............................. TAACTAGTGGCAAATGGGCTAAGAGTTTTTATAAGT 103 30 100.0 35 .............................. TCGGACTTTTTAAATATTTTAAACAAAATGACTGA 168 30 100.0 35 .............................. AAGAAATGCTCAAATAACTTGTACATTTCTTTTAA 233 30 100.0 35 .............................. ATAGAAAGATAAACTTTTGTAGGAGATACAAAATA 298 30 93.3 36 ...............G.............T AGGATAAAAAGCTATACAAGCAAAGCAAGACAACTT 364 30 100.0 36 .............................. TCTGTTATTTTATACTCTACCCCCGAGTAAAGAAAT 430 30 100.0 36 .............................. CTAAAATTAAATTTAACGGCTCTTGTTTTTAGTGGC 496 30 100.0 35 .............................. TAACTAGTATCTATAAATGACTTCTTAAGTACTTT 561 30 100.0 35 .............................. CAAAAATACTCTTTGCACTCCTCTTTACTAAGCCC 626 30 100.0 36 .............................. CTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCT 692 30 100.0 37 .............................. ATCTTTACAAGCACGTCTCCCTCATATATTCTAATCC 759 30 100.0 35 .............................. AAAGGAGCAAGGGCTTGGAAATGGTTTAGCAATCT 824 30 100.0 35 .............................. GAATATAAAAGAATTGCTGAGTTTTTTTATAGGGC 889 30 100.0 35 .............................. TGATATTCAGTGACGTTCTAAGCGTTGTTGATACT 954 30 100.0 35 .............................. ATAGCATTGTGATAGTGTTTCCTACGTTTAAAGGC 1019 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 1085 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 1151 30 100.0 36 .............................. TCAAATACCGCTTTGGATATATAGAAAAATTAACTT 1217 30 100.0 37 .............................. CTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 1284 29 73.3 0 ..........C....AGC.C..-..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 98.0 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CAAGCGTAGCACCAAAAGAAGCGTATGAAAGCATAGG # Right flank : TCACATAAAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAGAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAAAATAACAAATATATAAACGCTTTCAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 4239-5581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOXI010000040.1 Campylobacter fetus subsp. testudinum strain B1-01 contig00045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4239 30 100.0 36 .............................. AGAGGTCCTAATAGACACTAGCGGTACATTTTTTGT 4305 30 96.7 35 A............................. TCTGCTATGGGCAAAAATATAGAAGACAATTTGTT 4370 30 96.7 35 A............................. ATACGATATCAACCGGCAAAACCAATCTATTTGTT 4435 30 96.7 35 A............................. GAAATTTTATAATCGTCAAAAATAATAGGATCAGA 4500 30 100.0 36 .............................. GATCAGTTGGCTTTTCTGGTTTAGTAGTGTTATCAT 4566 30 100.0 36 .............................. TTTAATGGTATTTCTTGCCATTTTTGGAAAATAAAA 4632 30 100.0 36 .............................. TTCTATTTCCTTTTTCAATAATCTTGTTTTGATATC 4698 30 100.0 36 .............................. GGTAGAAACAAAGCTACCTTATTACGTTGGATTTTA 4764 30 100.0 37 .............................. GCTTTAGGGTAAAAATAATTTTATCTTCATTTGCTAT 4831 30 100.0 35 .............................. GGAGTTTTTAAAAGAGGGTGAGCGCATACCAAAAA 4896 30 100.0 36 .............................. AGAAGAAAAGTTTATTAAATACAAAAGTATATCCTA 4962 30 100.0 35 .............................. TCATTACCTTATGTGAAAGGTATGGCTGGGATAAA 5027 30 100.0 36 .............................. GCCATTTCATTCTCGTTTATAGAAGGCTTAACGTGA 5093 30 100.0 35 .............................. AAGCCTAATTTAGGCTTTTATAAATGCTCTGACAT 5158 30 100.0 35 .............................. AGTTAGAGATGAAGAGGTAATAGCGACTTTTAGAA 5223 30 100.0 36 .............................. TTTAAGTCTAAACAAACAACTAAATTTACAACAACG 5289 30 100.0 36 .............................. AGTACCAACTGACCTAGCTGTTCTTGAGGATTTTAG 5355 30 100.0 36 .............................. AGTACCAACTGACCTAGCTGTTCTTGAGGATTTTAG 5421 30 100.0 36 .............................. AAAAATTAAAAAAAACAAAAGAGGATATGAATAAAA 5487 30 100.0 35 .............................. ACGTACTATCTCTAAAAAATGCTATGGCTTTACTG 5552 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.5 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTACACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAGTGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAGCTTTTCATAGTTTATCCTTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : TTTACAAGTAGCGAAAGCTTTAGCAATTTTCTAGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //