Array 1 299-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABO01000267.1 Pectobacterium parmentieri strain NY1548A NODE_274_length_323_cov_8.54851, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 298 29 100.0 32 ............................. GCGTCTTGTGCAGCATTACGATAAAAGTTACC 237 29 100.0 32 ............................. CCAGCTCTTTCTTTCTTGACAGCTTCATAAAA 176 29 100.0 32 ............................. GCCGGGCTGGAGATTATCGGTAATGCGGAACA 115 29 100.0 32 ............................. GTCTCGACTACTAATAGGATCAATCATGCGGA 54 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTGGTCGATGAGGCGCTTAACA # Right flank : GGGCTGCGATGTGGTCGATGAGGCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 186294-184465 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABO01000001.1 Pectobacterium parmentieri strain NY1548A NODE_1_length_198116_cov_9.53465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 186293 28 100.0 32 ............................ CGATACACGAAAACCCAACGGTGATGATGGCC 186233 28 100.0 32 ............................ CACTTAACGCAGTCGCTATCGCAGCAACCGGC 186173 28 100.0 32 ............................ GTTATGCATACTGACTGAGCAGGCGAGGATTG 186113 28 100.0 32 ............................ TAATGCCTGTTGATAATATTGATCGTATATTT 186053 28 100.0 33 ............................ GCCCACGTCACCATTGTCCTGCTGCTGTTGCAA 185992 28 100.0 32 ............................ AGATTCAGCGTGTACTGATTCTCAAACGACAG 185932 28 100.0 32 ............................ AGCTCCGGTTAAATTGGACTGTCTCCTTTTCT 185872 28 100.0 32 ............................ CTGATGGAGTCTGATAGTGATTTTCGCCTGCG 185812 28 100.0 32 ............................ GCCACCGCGCCACTCGTCACCGTGAGGGCGTC 185752 28 100.0 32 ............................ GGTCAGGAACCGCGTGTCATGAATGAACGTAG 185692 28 100.0 32 ............................ TCTTTTTCGTCGCTGAACGGCCGGTGCAGTCT 185632 28 100.0 32 ............................ AACCCGGCTGAAACATGCCTTGCGCATTCTTG 185572 28 100.0 32 ............................ TGCTCGTTCCATTTCACCCATGTGAACAGGAA 185512 28 100.0 32 ............................ ATTTCCCAATGCCCGCCGAAGTCCGATTGCCG 185452 28 100.0 32 ............................ TTCACGCATTCATCCTGATGCTGCTTACTGGC 185392 28 100.0 32 ............................ ATCGCCTGACTGTAGTGCGTTTTCTCACTCGC 185332 28 100.0 32 ............................ GCTATGGCATCAGCGGCATTTCAGCAGGCCAA 185272 28 100.0 32 ............................ ATCCTGCGGCGGCTTCACTTCGCCTGGGAACG 185212 28 96.4 32 .............C.............. TGCCTGCCGACAGCTACGCTGACGAGCCGCAA 185152 28 96.4 32 .............C.............. TCCTGCTGGTGGACGAACGCGCCCGGAACCAG 185092 28 96.4 32 .............C.............. AGTTACTCGATACAGTTTCTCCGACCCAATGG 185032 28 100.0 32 ............................ TGATTATCAATTTGCCGAGCGGAACGGCGCAG 184972 28 100.0 32 ............................ GCAATGACAGCAGTTGTCGCGCAGCCGGTGCG 184912 28 100.0 32 ............................ AATCTCAAACGGCGTCAGCCCGTTGTACAACG 184852 28 100.0 32 ............................ AGCAGATACGGACTTACGCAACTGGTCGATAA 184792 28 100.0 32 ............................ GCCAGGCGAGGGAGCTGCACCGGACAGCGGGT 184732 28 96.4 32 .............C.............. ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 184672 28 96.4 32 .............C.............. TCTAGCCAGTTATGAATTTCAACCGACTTTGA 184612 28 96.4 32 .............C.............. ACTGTTATTTCATACGGCACATCAGGTGGCAG 184552 28 96.4 32 .............C.............. AGATCACAGTGAACAGGAAAACGATATTCAGC 184492 28 75.0 0 ............GC......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTATTGATGTCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTGGGAAAATGATGGCTACGAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGTTACT # Right flank : TTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAATTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGCGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27-238 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABO01000308.1 Pectobacterium parmentieri strain NY1548A NODE_321_length_264_cov_7.86603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 ............................. CTGTTTGGGTTGATGAGAAGGAGAGGACTTTG 88 29 100.0 32 ............................. GATATGCAAAACGTCATTATCGGCGGCATTCT 149 29 100.0 32 ............................. GTTGCCGAAATCTTCAATGGCATGGATTTAGG 210 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATACTCAATCGTGGTCGTGCCGAAACG # Right flank : AGAAAAATACTCAATCGTGGTCGTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32577-33645 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABO01000027.1 Pectobacterium parmentieri strain NY1548A NODE_27_length_64909_cov_9.93732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32577 29 96.6 32 ..C.......................... TCCAATTTAAATATGCTTTTTTTACCAATTCC 32638 29 96.6 33 ..C.......................... GACGAGGAATCTGATAACGCATTCCGTGTTCGC 32700 29 100.0 32 ............................. GTCGTTCATCAGGTCATGCTCTGACAGCTTCG 32761 29 100.0 32 ............................. CAGACCCTCTTTGGTATACTTCAATTTTATAA 32822 29 100.0 32 ............................. CAACGACATCGAAATCAGCGCTAAATATTTCT 32883 29 100.0 32 ............................. GATGCGATGAAACACACGTATCTGGGCTATGC 32944 29 100.0 33 ............................. TGGAAGGCTGGGCGCGTGAAATCGGGTGCAATC 33006 29 96.6 32 ............................A TCTGTCATTGGCTGTCGGGGAGGTTCACTGCC 33067 29 100.0 32 ............................. CCCCAGCGCATAAACGACGCTATACCACAACC 33128 29 100.0 32 ............................. TCAGCCCCCCAAACAAACACAGCCGCTATCCA 33189 29 100.0 32 ............................. TCTGCGTTAACAGGCCGCTTGTTTGGGCGTTT 33250 29 100.0 32 ............................. ATAAATCATATTCAGAGTTGGAATTCTTGAAT 33311 29 100.0 32 ............................. CTGTGGCTGAGCTATTTCGTGCGCGTCGTTGA 33372 29 100.0 32 ............................. AGAAAAATACTCAATCGTGGTCGTGCCGAAAC 33433 29 100.0 32 ............................. TGCTCGCAACGTTTGCGTATCAGGACTACGCA 33494 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 33556 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 33617 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGTATGCTCGTGGTCGTAACGGAAAATGTTCCACCGCGTTTACGTGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGCGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTAGTGATGGCGTGGTCGACGAATACGGAGTCTGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGAATTTTTTCTGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGTCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35515-36031 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABO01000027.1 Pectobacterium parmentieri strain NY1548A NODE_27_length_64909_cov_9.93732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35515 29 100.0 32 ............................. TTTTTCTGTACACGTCTAGTGGGTTTAAATCA 35576 29 100.0 32 ............................. CAAAAAACGAGTATCGCAATGGTGCGATTCGT 35637 29 100.0 32 ............................. GTAAGCAGCCGGGTCTATCGGCTGGCTCTCAC 35698 29 100.0 32 ............................. GTCTGGCGGCCACGTATTTCCCGCGGAACAGC 35759 29 100.0 32 ............................. GCTGCACGCCAGCCTTCCTACTGGATTCAGTT 35820 29 100.0 32 ............................. ATTAGGGCGGATGCGGCAGTAACGCCAACCCA 35881 29 100.0 32 ............................. GGCTGCGATGTGGTCGATGAGGCGCTTAACAT 35942 29 100.0 32 ............................. GTGAAAACCTCCGCTACTACCTTTGTTCTCTA 36003 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACCTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTTTCCCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTAATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGTACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGACGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6203-5334 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABO01000081.1 Pectobacterium parmentieri strain NY1548A NODE_81_length_7121_cov_9.91862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6202 28 100.0 32 ............................ AGCCTTATTCAGTTTCTCTGTCAGTTCTGCAA 6142 28 100.0 32 ............................ GTCGGCGTAGATGTTGATGACGGGTGATGCGG 6082 28 100.0 32 ............................ AGCAATCCGAGCAATTGGAGGCAAACCATCAG 6022 28 100.0 32 ............................ TGCCAGTTCAGATGTTGGCATCGCACCAATTG 5962 28 100.0 32 ............................ GTTCTCCGCTGGCTGCGAGCGCTCAACGTACC 5902 28 100.0 32 ............................ GCTCGGATCGTAGCCTATCCATACAGGGCGAT 5842 28 100.0 32 ............................ AACTACCGAGGCTCTAGGCGACTAAGCTAATT 5782 28 100.0 32 ............................ GTTGCGCTCGGCCGCTTGCTTCATCATCTGCC 5722 28 100.0 32 ............................ TGAATATTCTCATTGCGCTCAGGCTTTGGCGT 5662 28 100.0 32 ............................ TGCGAGGCACTGGCATCACCAGTCTGCCGGAT 5602 28 96.4 32 .................T.......... TGCTCACGGCTTAGTTCCTGAGTGGAGCCTGC 5542 28 96.4 32 .................T.......... AATGGAATATTGCCATTTTTTTGATCAGGAAC 5482 28 100.0 32 ............................ GCAATGCGTGGGGCGGCATGGTATTGAAAGAA 5422 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 5362 28 85.7 0 A...........GC..........A... | G [5336] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCTAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : CAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGATTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //