Array 1 254074-252946 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBOT01000012.1 Salmonella enterica subsp. enterica serovar Newport strain SN2667_100 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254073 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 254012 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 253951 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 253890 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 253829 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 253768 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 253707 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 253646 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 253585 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 253524 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 253463 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 253402 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 253341 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 253280 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 253219 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 253158 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 253097 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 253036 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 252975 29 100.0 0 ............................. | A [252948] ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271868-270743 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBOT01000012.1 Salmonella enterica subsp. enterica serovar Newport strain SN2667_100 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 271867 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 271806 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 271745 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 271684 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 271623 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 271562 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 271501 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 271440 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 271379 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 271318 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 271257 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 271196 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 271135 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 271074 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 271013 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 270952 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 270891 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 270830 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 270770 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //