Array 1 737799-736712 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ235876.1 [Clostridium] citroniae WAL-19142 supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 737798 32 100.0 36 ................................ ATTGATTCCGGGGATCTTCCCTGCGCTGATTTTAAC 737730 32 100.0 34 ................................ ATAACCATGACTATACTATATCATGGGATTCATA 737664 32 100.0 35 ................................ CTACCCACCCCAAACGATTAATGGATTTCTTCGGA 737597 32 100.0 34 ................................ TCCTCCACGCTTCTGTCTTTCTTGGCATGGCAGC 737531 32 100.0 35 ................................ CCGTCATATGTTGTTATGGTTACGTTTGCCATATC 737464 32 100.0 33 ................................ TGTTCCGTTCTGATGCACAGTCCCCCCTGATCG 737399 32 100.0 33 ................................ ACATTAAAATATAGCATCTCTCTCTTTTTTATT 737334 32 100.0 36 ................................ AATCCACACCTCTCAGATTGGAGAGCGGTGACCAGT 737266 32 100.0 33 ................................ CTTGGATCAATGCCTGAAGGAACCCTGTTCCAT 737201 32 100.0 32 ................................ TTTCGCTTACTCAGCTTGTCATATCCGATATT 737137 32 100.0 33 ................................ ACAGCCATGGAACCACAGAGGAGGCGGTAAGAG 737072 32 100.0 34 ................................ TTATGTATCGGGCAACGGAAGAAAGGAGAAAAAC 737006 32 100.0 36 ................................ CCGGATTGAGCTATTACAGTATCATTATTCCCGGAT 736938 32 93.8 33 .............T...G.............. CGTAAACAAGTCCAGGACAACCCCAATGGTGGG 736873 32 96.9 34 .................G.............. TGTCGAAGTAACAGCAAAAAAGACAAGGATATCA 736807 32 96.9 33 ..........C..................... TTCTTGACTTTACGCCCTTTTGGGCATATAATA 736742 31 78.1 0 A.T........-........A...G..A.T.. | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 98.0 34 GTCGTTCCCCTTGCGGGAACGTGGATTGAAAT # Left flank : TGCATATCCGCCATTTTTGTGGAAGTGAGGTCAGAGTTTGCTGGTATTGATCACATATGATGTGAATACAGAGACCGCAGGAGGAAAAGCGAGGCTTAGAAAGGTCGCCAAACAATGCGTTAACTATGGGAGGCGAGTCCAGAATTCGGTATTTGAGTGTATCCTGGACAATGCGCAGTGTGTGATGCTGAAGTCATTATTGGCTGAAATTATTGATGAAGAGGTCGACAGCCTGCGATTCTATTATTTGGGTAATAAGTATAAAACAAAAGTAGAGCATGTGGGGGTTGATAAGGGGATTGCGGCAGATGAGACATTATTTTTGTAGTGCGAATGTGAAGCACACATGAAAAGTACGGGGGATTCGCACCGGAAAAAGTGCACAAAAGATGCTTGGTTTGGGAGGAAGAGGCGATGATTTTGCTGTGTGGTATTCAAAGGAATGTATAGATGATATAAAAGTGTGATTGTTTTGTGTTATGATATTGGATATATTTGCC # Right flank : TGTAATATGACATCTATAAAAAGGTATATGGAAGATATTGATAGAGAAAGATATTAATAAAGAAAGATATAAATAAAGAAGTATCTTTGCAAAGGGATACCTCAAAAAGCGGGGAGTACAATATTTTCGGCCTAAGAATATCCTTGACAGATTGGAGACAGCAGTATTCGTCTGTTTGAAGTCATCTAAGATGATAAAATATGCAGCGATTATGGTATTTGGAGGAAAAATGGAACAGTTATCTATATTTGAGTGTATAAATGGAACAGAAGAAAATGGAACCCTTTCCACGGATGAATTGGCTGCAATTCATCCACGGATGGTTTCGTTATTTAGCGGTTGCGGCGGATTGGATTGGGGATTTAAAGAGGCTGGATATGATATTGTTTATGCAAATGATTTTGATAAGGATGCACAGAGAGTGTATGAGGCAAATTTTGGCGAGATGGACGAAAGAAGTATCCTCGATGTACCGGCAGAGGAAGTGCCGGACTGCGATA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGCGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : NA // Array 1 130099-128715 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ235884.1 [Clostridium] citroniae WAL-19142 supercont1.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 130098 33 100.0 33 ................................. TTTATGGACGAACCGGGGTCCTATGAGTGTAGG 130032 33 100.0 35 ................................. AACTGACAACGGGGCGACCTGGAATACTAAGACCG 129964 33 100.0 34 ................................. CTATCTGGCATAACGCTATGAAAGAGTTGAAAGA 129897 33 100.0 35 ................................. CGCAGTGCCGATTATATCATATAAGTTAGCATTTA 129829 33 100.0 34 ................................. GATTGCCTTATGTTCTAAGTCCATTTTTCAAAAG 129762 33 100.0 35 ................................. CGGCGTATCCGGCTGTTCCGGGTCGGCATGGAGTG 129694 33 100.0 34 ................................. AAGGTCACAATTGATACGACCGTCAGCGAGTACC 129627 33 100.0 34 ................................. AAGACGCCATATAAGGCGAACCACCAGCAGTATG 129560 33 100.0 33 ................................. CCAGAAATTATATCAAGACTTTAGATCACGCCC 129494 33 100.0 36 ................................. TCCCAGGGCATTTTTGCCTTGGGAGACATTGGTGGC 129425 33 100.0 36 ................................. GTGCGTTAAAGTGCATCTGGTGTCAAGTGTAGCTGT 129356 33 100.0 36 ................................. ACTGCAGCCGGCAGGTTCCAGAACACTGTGCGGCAG 129287 33 100.0 35 ................................. AAAGTTGATCGGTGTGGATGTATCTACTGCCTTGG 129219 33 100.0 32 ................................. TGTTCTGACGCTCCAAACGGCGCCTTTCTGCT 129154 33 100.0 34 ................................. AGGGATGTTATGGATAATCTGAGAACTGGTCTTG 129087 33 100.0 34 ................................. AACCTTTTTCTCGGCCTCGTTCTCTTCGTCCATT 129020 33 100.0 34 ................................. TGAGCTGTCCTATTTTATAGAATTAAGATTTAGA 128953 33 100.0 36 ................................. GTATGGTTCTATTTTCAGGTATGTTATCCCTCGGAT 128884 33 100.0 34 ................................. TCCGCATATATGAGCGGAGAGAAACAAGTAATTA 128817 33 100.0 34 ................................. TCTGCGCATGGCGGTTATAAGTCCACCCATGCCT 128750 33 90.9 0 ..............A.........C....C... | G,A,G [128717,128721,128723] ========== ====== ====== ====== ================================= ==================================== ================== 21 33 99.6 34 GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Left flank : GTCCATATTCTGTAGGGAAGGTTAATGCTTATATCAATTCCTTGAAAGACTTGTTTTCTGAAACTTTAATTTGGACCTTATCTATCATTACGGAAACGAGAAGAACATTAAAACATAAAGATAGTGAAGAAATCAAAATTGTGGAAAACGATAAGCTGGAGAATTATCATTTAAGTGATCTTGATATCAGAAATTTAAAAAAATCTCTTTGCTCTCCTTAGCGGTTCAATTGTTAAGTGTATGTTTACATATTATGGGATTGGAATAAATATTGCTTTGGGGTACAAAACTGAAAGTTTGGATTAAATATTATCAGAAAAAGGGAATACAAGTATTATGGTGCGAATCCCAAGCAAACATAAAATGTCTAGGAGATTCGCACCAAAATAAAGCACATAATATTTGATTTCGAGAGAAGATGTAGTATAATATGAAAAGAGATTTGTGCATTGTGTATGAGGGTAAGTTGTATTTAATAGTAAATATCATGCATAATTGCA # Right flank : TTGAACTTGGTAATTTTTCAATTACGATCATACCAAAGGAAAAATGTCGGGGTGTATGAATTAATTTCATATACCTCGACATTTATTATAGAATCATCTTATCAATTTGAAAGTCACAAAAATCGAAATCCCCTCAGAACGCTCCATCACACTTCCTGTCTAAACATCACCCGCGAAGCGTGGGCTCCGCCCCGGTGGATCCTGTTGTGGGCTGTTTTGATCGTCACACTGTTAAAGCCATCTCTGGTGTTCCGGTTTGGAAAGATAAAATTTTTTGCACTGGAGGTTATTGTGACTCTCAGGCAATGACCTTTGCAAAAGGTGTGGGACAGTTTGGTAGTACGGATTTTAACAGGGTAGATCTGTCCCGGTTCCATAAAGTCCGGGTGTTCAAACTGGTTACGGTACCGTACGCTGAGGACACCGTCTGCCAGTTTCATGGAACGTCCCTCCCTATCCACATCCGTGATGCGCACGACCAGATCCGTATCCTCACAGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //