Array 1 22812-25028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000002.1 Nocardiopsis composta strain DSM 44551 Ga0415200_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 22812 37 100.0 36 ..................................... GGTGAGGCGGCCGGCGGCTCCGGCCATCTGCCAGGG 22885 37 100.0 35 ..................................... TCCCTGATGGGATGACGCTGGGCACGTTCAAGGTC 22957 37 100.0 35 ..................................... AGCTGCCGGGTGGTCTCGGCGACGTGGCGCTCCCG 23029 37 100.0 35 ..................................... CGGTGCGTCGTCTGCGTCGTCTCCACCGCCGAGCA 23101 37 100.0 35 ..................................... GTCCTGGGCGTCTTGCAGCACGGTGAGCCGGTCCA 23173 37 100.0 35 ..................................... ACTACCCGGTAGGTGAAGACCACAGTGGTGTCGGA 23245 37 100.0 35 ..................................... AGGTCCCGGATCGCCGCCTGAACGGCGGCCTTGGC 23317 37 100.0 37 ..................................... GGCCAGCGCGGCCCGGATGGCATCGCGCCCTTCGGGG 23391 37 100.0 37 ..................................... CAAGGTGCGCCAAAGCGGGAACGCCGCGGAATGCAGT 23465 37 100.0 37 ..................................... TGCGACAACTGCGGCCACCTGGTCGACGCCCCGCACA 23539 37 100.0 37 ..................................... TGCGACAACTGCGGCCACCTGGTCGACGCCCCGCACA 23613 37 100.0 36 ..................................... CACAACCAGGTGGTCCCCGGCGTCTCTGGGGACCGC 23686 37 100.0 36 ..................................... TGCTGTATGCGCTCATCCTCCTGGCGACCCTGTACG 23759 37 100.0 39 ..................................... CTGCTGGACCGCGGCCTGTACATGAGCCAGGGCCGCGAG 23835 37 100.0 36 ..................................... TTCGGTGAGCACCGCGGCGTAGGCGCGGGCGGTGAT 23908 37 100.0 36 ..................................... CCATCGCCGCAGCTCGCGGACCTCGGAACCCGTACA 23981 37 100.0 35 ..................................... TCCGACTCCATCACCGACATCGAGTGCCGGATCGA 24053 37 100.0 36 ..................................... CCGGACCACGTCCAGCAGCAGCCCGGCCGCGTCCGA 24126 37 100.0 35 ..................................... GCGTGGGGGTCGGGTCGGTTGGGACGGGCTGACCT 24198 37 100.0 35 ..................................... CTTCAGCTCCGCGAGATGGAGTTCGTCCGCTGCCG 24270 37 100.0 35 ..................................... CCTGCACCCACCGCACATCCCGCCGTGAAGCAACG 24342 37 100.0 35 ..................................... CGACCAGCCGATACACCTCCCAAAAAGGGTGGCGC 24414 37 100.0 34 ..................................... TCAGCCAGTTCGCCCAGCTCCCGCGCGGCCTGCA 24485 37 100.0 35 ..................................... GGCCTGGTCGGCCTCCGGGGCGCGGGCCTCGCGCT 24557 37 100.0 35 ..................................... GGCCTGGTCGGCCTCCGGGGCGCGGGCCTCGCGCT 24629 37 100.0 36 ..................................... CTTTCTCCGGATGAGCGGAAGGGGCAGCCATGCGGG 24702 37 100.0 34 ..................................... CCCCACCTGCATTTGTACCTCCGTATCGTCACCT 24773 37 94.6 37 ..............C....A................. ATCGAGGGCTGACCTCCAGGTAGACGCGGACGTTGGA 24847 37 94.6 35 ..............C....A................. CTCCTGGCCACTGTCCGCCGCGACACGGCCGGCAC 24919 37 100.0 36 ..................................... GCCGAGAGTCGCCCGTCAGACCCAGAAGGCCCTCCG 24992 37 94.6 0 ..................A...........A...... | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 99.5 36 GTGGCAGCCGTCCTTCGGGGCGGCTGAGGATCGCAAC # Left flank : AATGGCGCTGTGGGAGCCCAGAAGCAGGGCAAGCGGATGTCCCATGGTGATCGCGAGGACATGGCCCGGTCGATTGTGGCTGCCGAGCCCGAGATCAGCGGTGCCGAGCTCGCCCGCCGCTTGGGGGTGAGAGCCCGGACAGGGCAGCGCATCCTCAACCGGCTTCGGGCCGATGAGCCGGTTGGAGAAGAACACCTGAAGTAGGACCCTTTGACGGTGGCCGGTGTGCGTTCGAAGGGAATGCGGCTGGAGGTATCCAGGAGAGCCTTGCGGCGGCTCCTGCGCAGGGCTCGGGGCGAGGAGGCCGGTCGGAAGTATCCTCGTTGGTGCCGGCGGCGCCGGCGGTTTGCGGGGAAGGGCTTCCGGGGGCTTGGGAACCTCTAGTGCTCATGGATTCCCGGGGAGGTTCTTAAGTAAATTGGCGCATGAATGGGGTGTATGTCTGTTTTCTAGATGTGTGTTGGCGGCGGGCAGTGGGGTGTTTCCGCTGTTCGGGCGCC # Right flank : CTTCGAACTCAAGCGCACCCGGAACCGCAAGGCCAGGTGGCAGCCGTCCTTCGGGGTGGGTTGCGAGGTTTGGTGGTTCTAGGCGGTGAGGCGTTTGGTGGCCGCTTCGATTGGGGTCTGGTCGGGGTGTCCAATCGGGGTGGCCCGGCGGCTTCATCTAGAGGTGTCAGCGAGCAAGGGCCGGGCCGGGCGCGGGGTGGTGGCCGGGTGGGCGGGCTGGTGGCGAGGTTCTTGGTCTGCGGGGTGAAGGACCTGGCCGATCCGCTTGCAGCCAGGGCCGCCGTGGAGCGTTGCTGGTGGGGCCCCGCAGGGTGCGGGGCGGTGAACCCCGCCAGGGGCCCGGGTGTAGACGGGTTGAGGAGGCGCCGCGTGCCATCTGATGAGACCGTCCCGGGGGCGTGGGAGGCGAGGGGGTTGAGCGCTGAGCAGGTGCGCGCCCTGCCAGCGGTGCTGGACCCGGTCACCGCCGCCAAGGTGCTGGGGATCGGGCGCACCACCGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGTCCTTCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 49772-50044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000002.1 Nocardiopsis composta strain DSM 44551 Ga0415200_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49772 29 100.0 32 ............................. GGAGTCGTCGCCGCACGGGCGGACGACCTGGA 49833 29 100.0 32 ............................. TGGAGGAGCTGGCGCGGCGCACCCTCGCCTAC 49894 29 100.0 32 ............................. TGCGCGCACGGGCGCACCATCAGGCCCTCACT 49955 29 93.1 32 .............G...........G... TGAGTCCGGGAAACGATTCACGGGGCAGGGCG 50016 29 72.4 0 C.......T...TG...A...CC..G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTGAGCCCCGCAGACGCGGGGATGGACCG # Left flank : CGCATCGGGGAGGAGAAGGCCCTCCGCGTCCTCGGCGAATCCGGCGAGGGCGGCCGCGTCACCTGGAACAAGATGGGCGAGGGCTGGTCCTGGATCCAGCGCCCCGGCACCGAGGCCGACCACGCCGCGGACGCCGCCGAGGGCTGGGAGCAGATCAAGCGCGACCTCGCCGCCGAGACCTACCGGCTGTACGTCCTGGACGAGTTCACCTACCCGATCAAGTGGGGCTGGATCGACGTCGCCGACGTCGTGCAGACCCTCCGCGACCGCCCCGGAGCCCAGCACGTCATCATCACCGGCCGCGACGCCCACCCCGACCTCCTGGACGCCGCCGACCTGGTGACCGAGATGACCAAGATCCGCCACCCCATGGACACCGGCCAGAAGGGCCAGCGCGGCATCGAATGGTGAGGCCGCCGAAGAACACGACAGCCGTGGAACCTCACCGATCCGCAATGTCAAAAAACGATAACACCCCGAGTTGTCCCAGGTCATTAAGT # Right flank : GGCCGGGTGCCGTCAGGGGAGGGGCCGGTTCACAGGTCGGACGGGATGAGGCTGTAGGCGGCGAGGTCCGTGCGGCCCCTGTGCAGGGGCATGGCGTTGCGTTCGATGCCCTCGAAGGTGAAGCCGGCCTTCTCCGCCACGCGGCGGGAGGCCCGGTTGCCGGTGGCGGCCTTGAGTTCGACCCGTTCCATCTCCTGGTCGAGGATGGCCCAGCGGGAGACGGCGGTGACCGCCTCGGTGGCGTAGCCGGAGCCGCGGAAGCGGGGGGAGAACCAGTAGCCGACCTCGGTGACGAGCGAGGGCCAGCGGGTGCGGAGCAGGCCCACCGCGCCGGCGAAGTCGCCGGTGGCGGTGACCGTGACGGCCCACTGCTGGCCGTCGCCGGTGGCCCGCATGGACGGGGCGGTGACGCGGCACCACTCCTCGGCGTCGGCGCGGGTGTAGGGGCGGCCGGGTTCCGGCAGCGGGAGCCAGCGCCGGGTCTCCGGGTCGGTCATGGC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCAGACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 516720-516993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000002.1 Nocardiopsis composta strain DSM 44551 Ga0415200_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 516720 30 100.0 31 .............................. ACGGGGAAGAGCGGGTCGCTATCGCGTTCAA 516781 30 96.7 31 .............................G TGTTCGCCTACGCCATGCCTAAGATCTTGGA 516842 30 96.7 31 .............................C GCCAGATGTCCTCGGTGCGCCAGTCATAGAT 516903 30 100.0 31 .............................. GTCGCGGCCGCTCTGGAGCAGATCGGGGACG 516964 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 5 30 98.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : AGCAGGAAAGATAGGGCGATCTTCGGATGGTGGGGGTGCCGCTCCCAGAGCGATCGTGGTCCCTGAGAACGCATCGAGCGAAATCGAGCGGAACAGCCGAGAGGAACCACCATGCCCTTCCACCACGACCACATGGCCGAACTCGCCCGCCAGAACCGCGAGCGTGCCGAGGCCGAGGCCGCCGCCGAGCGCGCCCGCCGGGAACAGCGCCGCCGGTCCGCCCGCTCCGATCCCGAGGGCCCCGCCCCGAGGCGGCGCGGCCGAGGCCGCTCCGGCTTCGGGACGGCGGCATGACGGCCAGCACCCGCCCCCGGCCGGAACCGTGCCCGGCCATCCCGCGCGCCGGACCGTCTCGGAGTGGACGCCCCGTCCCACCGGGTCCCGTCTCCCCACTCCTCTTGCCCGGGACACGGACGACGAAGAGACTGTGCAGCGTCCGCTCCGGAGTAGAAGTTGCCGAAAACAGGGCTCAAGCCAGAGAGAACACCAGCTCAACGAGG # Right flank : GCTCCGTCGGCGGTGGCCGAGATACTGGGTGGCATGGACAGAACCGACCGGGAATCCGTGTTCGTCGGCCGGGAGGCGGAGCTGGCGGCCCTTCGGGACGATGCCCGCCGGGCGCTGCGGGACGGTGCCACCGCCGTGCTCGTCGCGGGTGAGGCCGGGGTGGGCAAGTCGCGCCTGGTGCGCGAGTACGCCGCCGGGTCGCCGATGTCGCGGACCGTCGTCGGGGGCTGCCCCGAGCTGGGCGTGGACGGGCTGCCCTTCGCGCCCTTCGCCACCGCGCTGCGGCGGCTGGTGCGGGACGGGGCGGTCGAGCCCGGATCCGGGACGGGAGAGCTGGCCCGGCTGCTGCCCGAGCTCGGTGCGGCGCCGGAGGCCTCCGGCGGAGGGCGGGCCCGGCTGTTCGAGGAGGTCCTGGTCCTCCTCGAGAGGGCCGCCGAGCCCGGCGGGCTCACCCTGGTCCTGGAGGACCTGCACTGGTCCGACGCCTCCACCCGGGACCT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1156571-1156843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000002.1 Nocardiopsis composta strain DSM 44551 Ga0415200_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1156571 29 100.0 32 ............................. CCGCGCGCCCGGCACCGCGCGGCGTGCGCCCG 1156632 29 100.0 32 ............................. GTCTTCATGACCGCCCGGGTCTCCAGCCACTT 1156693 29 100.0 32 ............................. GGCTCCAGGTCCTGCACTTTGGCGTACAGCCA 1156754 29 100.0 32 ............................. GCGGACTCCACCGGCACGATGACGTCACTGCG 1156815 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GAGACGCCTTTGTAGGTGTTGGTGAACTTGACGCCGAGCCGGTCATTGATCCGCCAGGCGGCGAAGGACGTGCACTGGCCCGTCCAGAAATTCCAGGGATCGCGCACGTCGGGGCGGCTCTTGTAGGGGTAGTCGTCCTTGATCGCGCGTTTGCAGGGTTTGTCGCAGGCCGCGGCCTGCGTGGCCTCGGCGGGCCCGGGAGCGGCGGCGGATGCCGAGGGGGAGAACAGGAGGCCGGCCGTTAGGGTGACGGCCGTGATGATGGCCCAGCGCATATGCGGGACTCCTTCGAGGGGCATGCGGAAACCGGGTCGAAATGACCGGAAGAACAAGATCATTCCACGCCGAATCGCGTGCTTCGTCCCGAGAGGCGCGCAACGATCGCCGGGCCCCGGAAAGCCACCGAGATCAGAGGGAACGCGCCTGGGCGGTTCCGGGGCAAGGAACGGGAATGGTTCAAAACAAGAGGTTGCTCGGTGTATCGTGCCAGTTCAGCGAGT # Right flank : CACCGAGTACACCCCCGGCAACGTCACTACCGACCGGCCGGTGAGGGGCGCCGGGCAGGGGAGGGCGGGTTCTCTCGCTGGAGCCGAGGAAAGGAAGGCATCCCCGCCCTCTGGCGACCGGGGGAGCCCGGTGCCGCCGGCCGGACCGTTCACGGCTCCCTCGGGGGCGGCCTCACCCGGCGCGGGCGATGGCGATGGTCGCGCCCAGGCGGTGGCCGGCCTCGTAGAACATGTACTCGGTGCCGCCGTCGGAGCCGTAGGAGGGGGCCGCGGACCGTCCGGAGTCCGGGGGGTCCGGCATCGGGGTGTGGACCGTGCCCAGGTGGTCGCGGCGGGAGAAGTCCGGTCCGACCTCGGTGGCCCGGATGTCCCCGCGGTCGGTGTGGTAGACGACGAGGGTGCGGCCGTCCCGGGCCACCAGGTGCGGGCCGGACAGGTCGGATGCGCCCACGTCGGAGTGGCGGATCAGCGGTTCGGGGGCGAAGTCGAAGGCGATGCCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1234985-1235868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000002.1 Nocardiopsis composta strain DSM 44551 Ga0415200_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1234985 29 100.0 32 ............................. CCGGCGTGCACGTTGGTGGTGGACCAGGCCGC 1235046 29 100.0 33 ............................. AGGTCGGCCACCGCGATGTTGACCAGAGAGGTG 1235108 29 100.0 32 ............................. TTGGTGACTTCGAACGCGCGTCCTTGGTCGTC 1235169 29 100.0 32 ............................. CAGTACGTCGCCGACGTGATGGAGGCCATCGA 1235230 29 100.0 32 ............................. CGGTCCCGGGCGGTGTCGATCCGCCAGTTGAC 1235291 29 100.0 32 ............................. TGATCCGCGCGCTGTTCGATCGCTGCCAAGAA 1235352 29 100.0 32 ............................. TTCCGCGGGCGGCCCCGGCCGGTGTCGGTGAG 1235413 29 100.0 32 ............................. CGGTCGATCTCTTGCTCTTGACGTAAGTACGT 1235474 29 100.0 32 ............................. CTGGACGGTACGCCTGGCGTCATGCTCGGAGA 1235535 29 100.0 32 ............................. GTCGGCGGCGAGTGCGGCCGCCTCGCTGAGGC 1235596 29 100.0 32 ............................. GAGCCCGCCGCTTTTCTTTTCCAGGTGCTCGA 1235657 29 100.0 32 ............................. TCCCGGTAGGTCGGTATCCCCCTGGCCTATCG 1235718 29 100.0 32 ............................. CATCGTGGGTGTATACGGAGGCAAGGGCGGGA 1235779 29 100.0 32 ............................. GCCTCGGGGCTCTCCTGCATGGCCTGGGGCGC 1235840 29 89.7 0 .........................AG.T | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGCGGCCTTCCGGTTCGCCCCGCGCTTCCGCCGCGAGCTGGAGATCATCCGCCTCGCCCACCGCGCCCGCGGCACCGCCCACCGCGGCCCGCTGGGCCCGCTGCGCCGCGCCGGCCGGATGGCCGTCCCCCTGCTCGCCGGCGGCGTCCGCCACGGCGAACGCGTCGCCCTCGCCATGGACGCCCGCGCCTTCGGCGCCCACCCCACCCGCACCGAACGCCACACCCTCCGCTTCACCCTCCGCGACGCCCTCTTCATCCTGACCTGCTGGACCCTGACCGCCCTCTTCTTCTGGCTGACCCACACCGCGGGCCTGCTCGCCCCCCTCGCCTTCGACACCCGAGGCTGACGGGAGGGGCCACCCCCGAACCCCGGAGAGGGCCGCAAGAACGCCGACACACTCCGACAACGAGAGGCAACGCCCTTGCGGCACGGGGGGAGAAGAGCGGAAGTGGTTCAAAACAAGACGTTGCTTGGTGTATCGTCCCAGGTCATCAAGA # Right flank : TGGAGGGATCAGAGGAGGCTCTTTGGTAATCGGACCGCGGGATCCGTCCGGTCCTCTCATCGCCTTGCGGTGCCGCCAGTGACACCGCGTCATGACTTCATCCGCAGGAACGTCATGGCCGGGGGGTGACGCGGGCGCACTGCCGGAGCGGTGCGGTGGCGGTTGGAATGGGGGCATGCCCGCTACACCGGTCATCGACCCACCACCGACTCCCCGCGACGGCGGTGCCGAGGAGCACGACATGGCCCTGACTCTGCCGCAACGGCTCTACCTGCTCAGCTATGACCTCGACCGGAACCGGTTGGACCCGGTCAGTGCCGCCTGCCGGGATCATCTGCTGAGCGCCGCGGCGCTGGTCGAGCTGGTCCTCGGCGGGTGGGTGCGCGACCAGGGCGGTCGGGCGGTGCGCACCGGGGTCGGGGCGCCGGGGGACTCCTTCCTGGTCGAGGTGCTGGCCGGGGTGTCCACGGACCGGCCGCGGCCATGGGTCAACGCCGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1303915-1303588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000002.1 Nocardiopsis composta strain DSM 44551 Ga0415200_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1303914 36 100.0 39 .................................... GCAGACGGCGCGCTGCCGGACGCCTACCCCCACCCCGAG 1303839 36 100.0 35 .................................... AGCTCGTCGCGCTCCCGGACGAGGCACTCCAGGAC 1303768 36 100.0 36 .................................... GTCAGGTGCCGGGCGGGCGGCCCAGGCCGGGCTCCG 1303696 36 97.2 36 ..............A..................... GTCAGGTGCCGGGCGGGCGGCCCAGGCCGGGCTCCG 1303624 36 94.4 0 ..............A............T........ | A [1303590] ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 98.3 37 GTGTCCACGCCTCTTCGGAGGCGTCCACGTTGCAGG # Left flank : GCCGTCGACGCGGCGCTTCTCGAACAGGTAGGGCGAACCCTCCCCCGCGGTCGGGTAGGAGGGCGGGAAGACCTTGTCGCCTCCGGCCGGCTCATACGCGGTGGCGGTTTCGATGCCCGCATAGGCCCGCTCGGGCCCCACCGCCTCCAGCAGGCGCTGCGCCCACTCCTCCACGTGCCCGTCCCCTCCCCATTCGAAGCGCACCGTGACCGGTGCGCGCGGCCTATGCGGGAGCACCCTAGCCCCCGGCGGCGACAGAACGCAGCCGCACGATGCCGGATCCGTCACCGCCCGGCGCTAGATTCATCCCGAACCGGCCGACGCTCCCAGAGGCGACCGGTCGGGCGGACCAACGGGAGGGAGGGATCGGGTTGGGAACCCCAAGTGCCCATCGAAACCCGGGGAGGTTCCCAAGCACGAACACCACCACAAGCAGACAAAACACCCGCGCAAACCGCGCTCTCCTCCACCCGGGGTGACGTTTCCGCAGTTCAGGTGCT # Right flank : CCGCTCCAGCGTTGGTTGCCCCGACCACAACCTTCGCAAGACGCCCCTCCAGAGAAGAAGAGGAGTCCGCGCCTCTCCGCCGTCTTCAAACCGCAACCGTGTCGAACCGCCCCTGCTGCCCCCGCTGCTTGACCAACCGCCCCCACCGCTCCTTGCGCCCGAAACGGGTCGCGATCTCCTTGCCGCTGGGCAGACGGCCCTCCCCATCACGGTTGCGTTGGGCCCACCACCAGGCCTCCCCCTGGATACGAGGAACAGCTCCGAGGACTGCCGGAGCCTCCCCCCTCCTCGTCCCCGGAGCCTTCCACAGCAGAGACGACGCGAAGCTGCGGGCGCTCCCCATGCCCCTTGTGCTCTTCCAGATCCTCCGGAGCCGCACTCTGGGCCTCTTCCACCTTGGTCTCGACGGCCGGAGGCTCCGCGGTGGCGGTGTGCTCATCATCCGCGTTCGCAGTGCGTGCGCCCTGCTCACGCCGCAGCTCGCGCATCAGCAGCTCATA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCACGCCTCTTCGGAGGCGTCCACGTTGCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 7 1310886-1311495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000002.1 Nocardiopsis composta strain DSM 44551 Ga0415200_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1310886 36 100.0 36 .................................... TTGCTGGTCACATGCCGGGCAGCGCCATCTGGTGCG 1310958 36 100.0 36 .................................... GCCTCCGAGTTCGGCGAGGTCGCCCATCCACTGATC 1311030 36 100.0 35 .................................... GTTCAATCGTCACCTGTAACTCCCCAAGGGGTGCT 1311101 36 100.0 37 .................................... TGCTAGTGCTCGGATGAACTCCCGGCTCTCGGCCGGG 1311174 36 100.0 36 .................................... GGCCACAGCGAGGCGGCTAGCTCGACGGTGGGCCAG 1311246 36 100.0 35 .................................... CCCTTGTCCACCTTCGGCAGTCCTGGGAACAGACC 1311317 36 100.0 35 .................................... TCCTCGACCGTCTCCCGCAGCGCCCGCCGGGCGCC 1311388 36 100.0 36 .................................... GACTCCCCAGGGGCCTATGGTGGCGGCGCGGGCGCG 1311460 36 94.4 0 ..................G................A | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 99.4 36 GTGTCCACGCCTCTTCGGAGGCGTCCACGTTGCAGG # Left flank : CCGGCGCGACCTGGCTGGCCACCCACGCCCTGCCCCTGCTCCACCTGACCGGCAACGGGACCCGGCCTCAAGCCGCGCTGTGGCAGCGCATCCAGCGCCGCACCGTGATGCGCTGGCCCGTCTGGCACCCCGAACACGACCTGGCCACCACCCGGGCCCTGATCACCCACCCCGCGCTCACCCGCGCCCACTTCGACGACACCAGGGAGGTGCTGTGCTTCCCCGCCGAAGGCCTGACCCCGTTGGGCATCATCGTGATGGCCGCGGCCCAGCGCATCCCCGGCCGCAACTCCGCCGGCGCCCTCGCCCCACTGGAGACCCGGCTCACCTGACCCGCCGATGCCTGCCGCGAGAAGAGAGAAGGAGGCCGGTTGAGAACCCCAAGTGCCCACCGAACCCCGGGGAGGTTCCCAAGCACGAACACACCCATAAGCAGACAAAACTGGCGCGGCTCACTCGCCAGGAAGCACAAGGTTGTCTATTTGCGCAGGTCAGGTGCT # Right flank : AGCGGTCATTCCTGACATGGTGGTCCGAGAGATTCGAGTGTTCTTCCTCTTGCCTGAGAGGGTCGTCTTGCCAACGGCCACCGTGTGAGCCGCCAGTGCCCTCCTGGGGCCGGGAACACACGGTGGCCGTCGATGCGGCAGAGAGAAGGCGTCTGGACAGGGGAGCCGAAGTGCTAGTCGGGGTTGCGGGCAGAGACCAAGGCGTAGCCGAGCTCCGGGGTGTGTTCGATCTTGCGTGCCTCTTCGACGCGCTTTTCGAACTCCTTGACGCCGATCGCCTTCACGTACTCATCGCGGCAGGAGAGCGCCCCTTCGATGAAGTAGCGGATCGAGCGCCGCGTGTTCTGCATGGCGTCCGTGATCTCGATGGGGATCAGCCCGGCCTTCTCAAGAAGGTCGCCGTACTCGTCGAACCTCGCCATGGTGTAGGTCTCCTCGGTCGAGGAGGCGCCGGCGGAGTTGTAGCGTTCCTGCGCAGAGACCTCGTGCACGGTCAGGTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCACGCCTCTTCGGAGGCGTCCACGTTGCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 404295-404724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 404295 32 100.0 35 ................................ TTCGCGGCCTCAGCGGTCAGCGCGGGGATGGCATA 404362 32 100.0 34 ................................ CTGGCACTGTTGAACGCGAGGCATCGATGGCAGT 404428 32 100.0 34 ................................ ACATTAGCCCCTGCTGCATCAGCAGGGGCCTCCC 404494 32 96.9 34 ...............................T CGTGTACCGCTTGATGGCGTCCTCCATCCAGCGG 404560 32 100.0 35 ................................ GGTCCAGGGCGTCGGCCCGCCAGACCTGCACCGCA 404627 32 96.9 33 A............................... TCGACCTTGAACCGGGTGATGTGGTCATACACG 404692 32 84.4 0 .....T...T.........G.........C.C | A [404717] ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.9 34 GGTCGCCATCAGCCCTATGAGGGATGGAAACG # Left flank : GCCAGGTGCGGAAGCAGCCCGGCGTACATGCCCGCGTCACCGGCCCCGCCCGGCAGCAGAACGAGAAGCGGCCCGCGGCCCCGCACCTCGTAGTAGAGCTCGGCCCCTGGCACCGGGAGGGTTCCCGTCTCGGGCACTGCCGGGGATGTCCCGGTGGTCATGCTGTACGTCCTTCCCTCTGAGGGCTCCCGGTAGGGGAGCCCGGATGCGGACGCCGACTGCGCCGCCCGCTCTCTCAACCTAGGAACTCTAGGAAGAAACTTAGGAAGACGAGGGGAGGGTGTCAAGCGGGAACTGGAGGCGCTAGCATGCTGCTGCTCAGAGAGGGGAGCGAAAGAGGGGAGGGGGAGGCTGGAACCGGCCGGGCCCTGTCGGGCCGTCCCTGCCAGGAAGGCCGTACTCGACGCTCTCACCAGTACAGATGCACAACCGGAGGGTCGCTGCAGAATCGCCTCGGCGAGGCCGCCTGATTAGTGCCTCTACCTGCGACTTTACTCTCG # Right flank : CGGTCCCCCTCGCGCTTGCCCGCGTCTGGGCGATGGGCGCTATCAGCCCTATGAGACTCGCCGCATGGCGATTCCGGCGCCCGCCGCGCTGCCGACCGCCAACGCGCCGAAGAGCAGCAGCCACCACACGTCGATGACGTGTCCGATGAGCGCGATCACTACGCCGGTGGCGAGCACGCCGCCCACTCCGGCGGTCTTGCGTGAGGTGGCCGGGGTGCGCTTGCGCGCCCTCGCCTCGGCCTTCGCCTTTGTGCGCGGGGAGAAGGACGGGGCGGCCCAGAACGCCGCGCAGGAGATCGCGAGCAGGGCGACGCCGACGTCGCGCCAGCCGTTACCGCCCTCGGCGAGTCCATACAGCAGCACGCCCGCGCCGGCGACGAAGACGGCGCCGAACGGGGTGGCTCCCCAGCCGGCCATGACGTACAGGCCGGCGCACGCGGCGATCATCAGCCCCAGGCCGACCAGGCCCAGCATCACGCCCATCGCGACCGGCATCATGT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCCATCAGCCCTATGAGGGATGGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 723084-722871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 723083 30 100.0 31 .............................. CGAGATCGTTTCCGGACGCCTGCCCGGTCGC 723022 30 96.7 31 .............................G CGTCCGGCACGTTCACGTTGGGCGCTTCCGG 722961 30 100.0 31 .............................. GGCGCTTGGCGGCAGCCCACGAGGCCGGTCT 722900 30 86.7 0 .....................TC...TA.. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.8 31 ATGCGCCCCGCGCACGCGGGGATGGACCCC # Left flank : TCGACGAGGGCCAGGAGCTGGTCCGCGCCTGCCTGCGCCGGAACCGGCCGGGCCCGTACCAGATCCAGGCCGCGGTGAACGCGGTGCACGCCGACGCCGCCACCGCGGCGGACACCGACTGGCGCCAGATCCTCGCCCTCTACGACCAGCTGGCGGCCTTCGACCGCGGCCCGGTCGCCGCCCTCAACCGCGCCGTGGCCGTCGCCGAGGTACACGGCCCCGCCGCGGCCCTCCCCCTGGTCGACGCGCTGGACCTGGACCGCTACCACCTGTTCCACGCGATCCGCGCCGACCTGCTGCACCGCCTGGGCCGCACCGCGGAGGCCGATGAGGCCTACACCGCCGCCCTCGCCCGCACCGACAACGAGGCGGAACGCACCCTGCTGCGCCGGGCCCGGGAGTCACTGCGTTGACCGGACCACCGCCACCGGGCACACTCCCGGATGGCGGAAGTGAACGAAAACGGCCCCCCTGCGGGGAGAAGCACCAGGTCAACAAGT # Right flank : GGTCAGCTTCCTGATTCGATCAGCGGGGTGAGGCCGTCGAGCAGGTGCTTCATGCCGAGCTCGAAGATGGCGTCCACGTCGGGCGGCCCGGAGACGCTGAACACGGTGGGGAACCGGCCCTCCTCGGCGATCTGCCGGAGCTCCTGGGCCCTGGACATCCACCAGTGCTCGGCGTCCATCCCGACCTCGTCCTCCTCCACCACCGCCCGTGTGGCCTGGAGGGCCATGCCGGAGGTGTAGGCGGACAGCAGGGTGAGGATCTGCAGGGCCCCGTCCGGGGAGTGCCCCTGGGCGGCGATCACCTTCATCATCCACTCGCCGTTCTGGAGGAGGCCGGGCGAGTGGACGCCTCCGGACACCATGGTCAGCCGGATGGCCCAGGGGTGCCTGCGGTAGATGTCCCACTCCGCCAGCAGGGCCGTTTCGAGGGCGCGCCGCCACCCGGAGGGCGGCGGTTCGGGCAGCGCCCTTTCCGTGTAGACGCGGTCGATCATCTCCGA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCGCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 743183-743516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 743183 30 100.0 31 .............................. ACCGGGACCAGGACAAAGACCAGCACTAAGA 743244 30 96.7 31 .............................A ACGTGAACAGCAGCTCTTCGCGCTGTTTGGC 743305 30 100.0 31 .............................. CGGTGCTGCGCTGGTCGGTGAGAGCGTTCAC 743366 30 100.0 31 .............................. AGGAGAGGATCGGGCGAGGATCGCGCAGCGC 743427 30 96.7 31 .............................T CGTCGTCCTGGCACCAGTCGATGGCGCGGTG 743488 29 73.3 0 .........C....C.-...TC.A...AT. | ========== ====== ====== ====== ============================== =============================== ================== 6 30 94.4 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Left flank : CGCAGTCCACGTAGTGGCCGAAGCGGTCGATCCGGTAGTAGCCGCACCGCTCGTACAGCCGGATCGCCTCCGGCTGCTCGACACCGGTCTCCAGGCGCATGACGGTGGCCCCGGCGTCCACGGCGTAGCGCTCCAGGGCGCGCAGCAGCACCTGGCCGATGCGCCGACCGCGCCACTCCGGCACCACGTACATCCGCTTGACCTCGAAGGCCTCCGCGTCGAGCCTGCGCAGGGCGCCGCAGCCGACCGGCTCGCTGCTACGCCCATCGGCCGCCAGCAGGAAAGTGGAGACGTCTCGACCGGAGGGCTTGGGCCCGAGCTCGATGTCGCCCCCGTACCGCTCGACGGTCTCCCGCTCCTACTCGTCCCGGAGCCGCTTTCCGACCGGGTCGTCCCAGTCCATCTCTTGAAGGGTGATCTGCACGGGGAGGAAGCCTACGTCCCATGCGGAAGTGGTTGAAAACGCGCCCCCGCGCCGGAAGAATCCCAGTTCAGCGAGA # Right flank : CCCTCAGGCCAGTGCCGTAGAGCGCGCAAACGGGCCAGGAAGACCGACTCCGCCGGTGAGAGCACCCGGTCCCGGCGGTGGCAGACCATGATCGGGCGGCCCGGGCGGCGGGGGCGTACGTCGAGGACCGCCAGGGAGCCGGTGGCCACGTCCCGGGCCACCGCGTGCTCCGACAGCAGGGCGATGCCCAGCCCCGCGCCGACCGCCTGCTTGGCGGTCTCGGCTCCCCACACGTCGGCGGTCGCGGCGCCGGTCAGGCCCCACAGTTCCAGGGTGGCCAGCTGCTCGTCGCGGGTGGAGGAGCCCGGTTCGCGGAGCAGGAAGCGCTCGCCGGACAGCTCACCGGGGTCCAGCGGCCCGGCGGCGCCGGCCAGCCGGTGGCCGGGGTCCGCGCACAGCAGCAGGCCGTCGCTGAGCAGCGGCTCGACCAGCAGCTGCGGCGCCGAGGGGCCGCCCGCGACCACCGCCAGGCCGATCTCGCCCTCCAGCAGAGCCGCCTC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 835272-835059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 835271 30 100.0 31 .............................. AACTCCACCGGCTCTACGAGTCGAGCGGCCA 835210 30 100.0 31 .............................. AACAGTCGCTCTAAGGCAGCCAGCGGCTCGT 835149 30 100.0 31 .............................. CCTTGAGCTGAGCCGCGGTGGGCTGCTCCGA 835088 30 86.7 0 .........................AA.TC | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGGACCCGGCCGAAGGCGGCGTTCTACGAAGGGCTGCCGCGGGTGCGGGGTGCGGTCACGGCGCTGCTGCGCGAGGAGGGCTCGGGCCGGGTGCTGGTCTGGGGCTGGTGCCGCGGCTGCGCGGTCTGGTGGCGGTGGACCGGGTTCCGGCGGGCGTCTTCCCCAACGGGCGCCCGGCGCTGGTGCACGTGTTCGCGGGGTCCCTCTCCCCCCGCCGAGGCGGCGGGGCTGCGCCCGGACGGTGTGGAGCTGTCGGCGGCCCGGTCGGCCTCCCCAGGCGAGCTGGAGGGGCTGCTGCCCGCGCTCCTGGCCCGCCGGATCGGCCAGGCGGTGCGCGCCGATGACGCCGGGTCGGTGGCCTATCTGGAGGACGGGCGGCCGGTGGACTGGGAGCGGTGAACGAGAGGGCGTCCGGCCGCGCGGCGCACCGCCGCGTGTGCTCTTTGCGGGAAGTGGTTGAAAACGACCCTCAGCCCGAGAAGAATCCCAGGTCGACGAGG # Right flank : TGCGATTTTCCGGCATGAGGAGAGAGGCCCAATGGATCTGATGACCGACGTCGATGTCGCCGCCCGGCTCGGGGTGGGAGAGCGGTGGATCGCCGAAGCCGCGAAGAAGGGTCTGATCCCGCATATCAGGTTCGGCCGCACCCGGCGCTACCGCGAGGAGCACATCGCGGAGATCATCGCCGCCCACGAGGTGCGGCCCCGCTTCGAGCCGGCGCGGTTCCCGCCGTCCGGCCGTATCCGCTGAAGAGCGGGGCGGGGTCGGCTGCAGCGGAAGGCCGCTCGCGGGCTGTACGGCGGCCGGTGGGAGGCGCCGCCCCTCCCCTGCTCCGGTGCGGCGTGGCGGGGCCGCGGTAGGACGGCCGCTCCCCCGTCCCCGCAAGGGCATGCCCCTTGCGCCCGGTAGATGGGAGGGGCACCGGGCCGCAGGGCCCGGGGTGGGGCTCAGTCGGTGTCGGTGGCCGTCCAGAAGGGGCCGTTCGGGGTTCTGGTTTCGAAGAGGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1140604-1140349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1140603 37 100.0 36 ..................................... TATAACGGGGGTCTCGCTAGGTGCGTACCCTGCGTA 1140530 37 100.0 35 ..................................... TCCGTTCCCGGGCCGGCGCCGCCGCGGCCGCAGAG 1140458 37 100.0 36 ..................................... ATCTCAGCCCTCCTCGTCCTGTCCGCGGGCCCAGTT 1140385 37 91.9 0 ..........T...........A............G. | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.0 36 GTGGCAGCCGCCCTTCGGGACGGCTGAGGATCGCAAC # Left flank : GCCGAGGCTCCCGGCGGTGACGAGGTTGATCCACAGGATCTGCAGCGGGCTCATCGGCATCGTGAGGCCCGCGGCGATGGCGGCCGCCGCCACCAGGACCAGGCCCCCGTTGGTCGGCAGGGTCCAGGCGATCACCTTGCGGATGTTGTCGTGGACCACGCGCCCCTCGTGCACGGCGGCGACGATGGAGGCGAAGTCGTCGTCGAGCAGGACGATCTCCGCAGCCTCCTTCGCGGCCTCGGTCCCGCGGCGGCCCATCGCCACCCCCACATCGGCCTGCTTGAGGGCGGGGGCGTCGTTGACGCCGTCGCCCGTCATGGCGACCACGTGCTCCGCGGCCTGCAGCGCCTGGACGATCCGCAGCTTGTGCTCCGGGCTGGTGCGCGCGAACACCTGCGCCTGGTCCGCGGCGGCCGCGAACTCCGCGTCGTCCATCGCGTCGAGTTCGGCCCCGGTCACCACCACCATTCCGTCCGCCGGGCCCGCCGCGGCCGCGTGCC # Right flank : CTGCCGCGGCCGCCGGGCCCTATGCCCATAGGGGCATGGCAGCCTGGGACGACCCGTTCGCCGTCTCGGGGCCTACTCGGTGTTCCCGCAGTCGGGTCAGGCCGTCGTGGCGGCGGCTGAGATCGCGTCGAACTCCGTCTCGCTCAGCCGGATCCGCGCCGCCGCGGTGTTCTCCTCCACGTGCGCGGCCTTCGAGGTGCCCGGGATGGGCGGCATCACCGGTGAGCGGCGCAGCAGCCGGGCCAGGGCGAGCCGGGGCGGGGGCGCCGTGCCGCTGGGCGGCCTCATCCAGCGGGCCGCCCGGGCGCGCCAGGTCGCCGGCCGCCACCGGGCCCACGGGGTGAACGCGATCTGTTCGGCGGTGCAGTGGTCGAGGACGTCCTCGCTACTGCGATCGGCCAGGTTGTAGCGGTTCTGCACCGAGGCGATCGGGGCGCTCGCAGGCTCGGGCGCCGTCTCCGTCGACGTCGAGGAGGTCTCGTTCTCCCATGCCGGTGCGG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGCCCTTCGGGACGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 1206077-1205925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1206076 30 96.7 31 .............................C TGGAGGTCGCCGTCGGCTATGTCCCCGAGGG 1206015 30 100.0 31 .............................. CGACGCGGCGCTCAATGCAGGAAAGATCGGT 1205954 30 86.7 0 ..G.......................T.TG | ========== ====== ====== ====== ============================== =============================== ================== 3 30 94.5 32 CTCCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GAGGACGCCGACATGGAGGACGCCCCCGACCAGGTGAGCCTGCAGGGCGACGGCGGAACCGAGATCGGATCGGGGATCAACCACGGGGTGATCTGGTGACGGTCATCGTGCTGACCACCTGTCCTGCGGGCCTGCGGGGGTTCTTGACCCGGTGGCTGATGGAGATCTCGGCCGGGGTGTTCATCGGCAACCCCTCGGCCCGCATCCGGGAGGCCCTGTGGCGCGAGGTCCACGCCTATGCGGGCACCGGGCGCGCTCTTCTCGCCTACAGCACCGACACCGAGCAGGGCTTCACCTTCGAGACCCGCGACCACAAGTGGAGACCGGTCGACCACGAGGGCCTGACCCTGCTCATGCGCCCCCACCGCGAGACCGTCACCGAGCCGCAGGCCCCCACCAAGGGCTGGAGCAAGGCCTCAAAGCGCCGCCGTTTCGGAAAGCGGTAGGGAGAAGTGGCCCGAAACAGCCTTGAGCGCTTGTGAAACCACAGGTCAACGAGT # Right flank : TGGCACCTCTTGGATCGAGGAGCGTGGTCACGTCCGCTGGTAGCGGACACGGCCGTGTCGCCCAGGCGTCGGGTGGAGTGCTCCTCGGCCGTGGGTTGGAGGCGGAACTCGTTCTCCGGGTTGGAGAAGCCGTGCCCCTCGTTGTCGGCGGCGAGGTACCCGACGGGGATACTGCGGGCGTGCAGTGAGGCGGCGATGCCGTCGGATTCGGCGCGTATGGCGCGGGCGTCGTTGGTCCCGTGGGCGGGCGGCAGCGGTGTGGTGATCTCGCTGCCCCGGGCGGTCGGTGACCGCGTCGGCAGGTCAGCCTCCTGGGCGGGGGCGTCGGGGGCGCCCATGTATGCGGACCAGTTGTTCATCAGGTACGGGTGGCTGAACGGGGCAGGTGGCGTAGGAAGCTCGCCAGGGCCGCGATCCCGATGGTGTCGACGGCCGCGGTGAAGCGGTCCGGGGTGGCGGTGACGCCGGTCAGGGCCGCGGAGTCCCGTAGGAGGCGCCCA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 1216784-1215411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1216783 29 100.0 32 ............................. ATGTGCCGGCGGCGTATAGCCGCCACTTGATC 1216722 29 100.0 32 ............................. GCGCCCATCCCGAACGTGATCGCGCTGATCGG 1216661 29 100.0 32 ............................. CACCTCCGCTGAGGCCATCACCAAGCTGATCG 1216600 29 100.0 33 ............................. CCCGTCCGGACCCCGTCCGGACCGGTGTCCGAA 1216538 29 100.0 32 ............................. GAACGGTCCTCCGTCGGCAAGGGCATCCGCCA 1216477 29 100.0 32 ............................. AGGGCCGTGCCGGCGATGCGCAGCACCGGGGT 1216416 29 100.0 32 ............................. GCGTACCGGACCGCGTCTTTCAGCAGGTCATC 1216355 29 100.0 32 ............................. GTCGCGTTCAAGGGAACCACCGAGCAGTGGCA 1216294 29 100.0 32 ............................. AGGGCAGAGTCCTCTAATCTCCCAGGAGCAGG 1216233 29 100.0 32 ............................. TCCACCAAAGCATGGTGCACTGTCTATACAAC 1216172 29 100.0 32 ............................. ATCGGTGCAGGTGTGCGGGCTGTGGCCGTTCG 1216111 29 100.0 32 ............................. TGGGCGGGGGTCAGACCGCTCTGCGCGGTGTT 1216050 29 100.0 32 ............................. AGCACCGGGCTGGTGCTGCTGATCCGCCAGCC 1215989 29 96.6 32 ............................A CCGCGGCCGCCGCGCCGGTGGCCGTGTAGAGC 1215928 29 100.0 32 ............................. CTGCCGAACGTCCACGTGGCTAAAGACGTCGA 1215867 29 100.0 32 ............................. GATCTACGCCACCCGCCGCCCTGGGACCCCTG 1215806 29 100.0 32 ............................. AAGCACTACCCGATCTGCCACATCTCCGATTT 1215745 29 100.0 32 ............................. CGGGCGACCTGGTCGCCGCCGCGGCGGAGCAC 1215684 29 100.0 32 ............................. CGGCACAACATGAGCGTCGACGGGGCGACGGG 1215623 29 100.0 32 ............................. GCCCGCTGTGGCGACCGGCGGACGGTTCGCCG 1215562 29 100.0 32 ............................. TGTGACTCCGGCGACCAGGTGCTGTCCCGGCG 1215501 29 96.6 32 ............................A AGAATGGCAGAGCACCCCCGAGGGCAAGCGCG 1215440 29 75.9 0 ...............TC....G...AGAG | C [1215413] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 CTGCTCCCCGCGCACGTGGGGATGGTCCC # Left flank : CACCTACCACCAACTGGTGCTGGCCGCGTGCATGAGCGCCGGCTTCACCCCGAACATCGCCCACCACGCCGACGAGTGGGAGACCGGGACCGCCCTGGTGGCGCATGGCTTCGGCATCATCCTGATGCCCCGGCTCGCACGGATCAGCGACTGGTCGGTGGTCCGCATCCCGCTGCACGGCGAACCCGCCCCCGCCCGGCGCATCCTGGCCGCCACCCGCCAGGGCCACCGCGACCACCCGGTGGTCGCGGCCGCCCTGTCCACGATCGACATGATCGCGACGACCCTCCAGCCCTCGCGCCGGGGGACGGGGGAGTGAGCCGTGTATCTCCACCGCCACCGCCCCGGCCGCCCGCCCTTCCCGCCGCCGTGGCGAACCCCAGGACAGCGGAACAGGAACGACGAGAGATGGTGTGGGGGAAGCGGCCGACGGTTTTGGAGAGAAGAGGAAGTGGTTCAAAACAAGAGGTTGCTTGCTGTATTGTTCCAGGTCAACGAGT # Right flank : AGGATCGGTGGTGCCTCCTGGTTGTCAGCGTGGCCGGATATGGACAGCAAGGAGGTTTCCGCTAAAAGCCCAGAGCGGATGCGCTTGAATCTCGCCATGTCCTACGAGGAGTACGCCCAGCGGTTGAGCGCCGGCCTGAGTGCCGCGGCGCGTTCGGTGTGGGCCAAACACGACTGGGACTCGGGCGGTTGGCTTCCGCTGTGGCGGCACATGGGCGACAGCGCAGGCGTGGCGGCCTATCTGTGGGACGAGTGGCTGGCGCCCCAGGTCAGAGTGCGGATCAGTGAAGCGCTGCCCGAAGGCGAGGCCGACGGGCGCAGGTTGGCGGTCTGGCTGGCCATGGTGCACGACATCGGCAAGGCCACGCCGGCTTTCGCCTGCCAGGTCGACGAACTGGCCGAAGGCATGCGGTCCAACGGGCTGGTGATGGACTCCGCCAAGCAGATGACCGAGCGCTCGAAAGCCCCCCACGGGGTGGCCGGGCAGCTCCTCCTGGTGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGTGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 1228585-1227935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1228584 29 100.0 32 ............................. TCAGGTCCCGTCCTGCTCGACCTGGAGGTCCC 1228523 29 100.0 32 ............................. CTCGCCGGGCACTGGCCCGAGGAATTGAGCGG 1228462 29 100.0 32 ............................. AGCACCAGCGCCGGCACCGCCACCGCCACGCC 1228401 29 100.0 32 ............................. TCTTCCTCGGCGGCGCGCTGGGCCTCCCGGTC 1228340 29 100.0 32 ............................. TTGCAGGTGGCGACGAAGGCCAGGGTCTCCAG 1228279 29 100.0 33 ............................. GCGGCACGTATCCACTCGCGGGCCAGCTCCCGG 1228217 29 100.0 32 ............................. CGCGCGCCCATGGCCGCGTGCACGGTGTACCT 1228156 29 100.0 33 ............................. TCGCGGGCGTCCCACTGCTCGGCCTCCCGGGAG 1228094 29 100.0 32 ............................. CGGCGCCGCGCCGCCCTACTGCAGCAAGCCGC 1228033 29 89.7 41 ....................A.G..G... CGGTCGTCTCTCGCCGACCGTCACGGGTTCATCCCAGAGAA T [1228011] 1227962 28 69.0 0 G.................C.A-G.A.TTT | ========== ====== ====== ====== ============================= ========================================= ================== 11 29 96.2 33 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TGGCCCTCCTGCTGATCGCCCTCTCCCTGGCCGCGGCGCACGCGGCACTGTCACACACCGCCCCCGCCCCGCCCCCGGCCGGGGGAGAATAGCCCCACCCGGCGGGTGCGGGCGGAGGCCTCCGCCCCGGGACCGGGCCTGCGCGAGCCGGTGCCCCCGGTGGCGCTCGAAGACGCCTGAGACACCGGGGGCCCGTCGGGGCGCCGCGGGTCCGGGCACCTCTGAGAATTCAGGCCGCCGACCGGGGAAATGGGTGAACAGGGCGTTCAGCCCGGCCGATACGAGAGGGAAGACCGTGCCCGGGGTGGTCTGGGCGGTCGCGCTGTTCAGCATGTTTCCGAGCTTTGAGCGGTGGGTTTCGATGGTCCAGGGCCGGGTGCCGCTGTTCGCTAGGGATCTGAGGACGAGAATGCGCGGGCCGCGGCCTGGTGGTTTCGTGGGGAGGGCGGAAGTGGTTCAAAACAAGAGGTTGCTCGGTGTATCGTGCCAGTTCAGCGAGT # Right flank : GGCGATGGTGCTCGTGCGGTGCCGGGAGGGGCCAGGGCCCCGGCGTGCCGGGGTTTCTGCTCGGGGGCGGGTAAGGCCCCCAGCGGGGCCGGTGCGGGACAACAGTCTCCGCCCCCGGCTCCGCCGTGTCAGGAGTTCCACACGGCGATCGGTTCGCCCAGTGCCGACTCGTCCACCTCGATGCCGAGGCCGGGGGCGTCCGGCGGGAGGACGCGGCCGTCCTCGGTCGGTGCGTCGAACCTCGCTGTTTTCAGTGTCACCATGTCCTCGCAGTTGAGCACGTGGCGCAGCGTCCGCGGTGGGACGGTGGCGCCCAGGTGCACGATCGCGGAGTAGGCGATGACCGAACCGACGGTGTCCTGCACGCTGACGGTCAGCCCGGCGGGTCTCAGACGACGTCGAAGCGGACGCTCCCCAGGCCGTCGAAGCGGCCCTGCACGGTGCCGGGGCGGTCCAGCGGGACGGCGCGCAGGCAGCTCCCCGGCAGGATCACATCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 1475783-1476136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1475783 30 100.0 34 .............................. GCCAGCTGCTGCAGGCGCGGGATGACCTGCTCTC 1475847 30 100.0 35 .............................. CGGTAGCCGGCGGAGGCGGCCTCCAGCCGGTAGTC 1475912 30 100.0 34 .............................. CTGAAACCGAGAGAGGCTACCGGGCAGTCTTCAA 1475976 30 100.0 35 .............................. GAGACTTCGTAGCGTTCGGTGATCTCGCTGTACGT 1476041 30 100.0 36 .............................. CTCTGCGAACTCCAGCAGGTGCTTCATCTGGTGGGC 1476107 30 90.0 0 ....................A...G....T | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.3 35 GTCGCCATCAGCCCTATGAGGGATAGAAAC # Left flank : CGCACCGCGGTCCCCGTCGTCATGAAGGGCTCCGGCCTCGGCCCCGACGGGAAACGCACCACCCGCCAGGCATGGCTGCTCCCGTCGGATCAGGAATTCGCCGCATGCTTCACCGGGAACCTCCGCCGCAAGGCGACCGCCCTCGGCCTGCCCGACGACGTGAAGTTGGAGGACCTTCCCTGGACCGGCTCCCGCCGCACCTTCGCGGTGGGGAAGGGCGCCATTCCGGGTGCACTTCTGGAGGCACAGCTGAGCGGAGCGCCGGAGACCTTGCAGGCCATCTGGTCCTGGGGACTGGGGCAGAACAACACGACGGGGTTCGGGCAGGTGGTGGCCTGATGGGTGGACTTGCGGTGCAGGGCCTTCCCGGCTGTAGAGTCGGCTTGGAACAACCGAATAGCAGCGCTCTGACCAGCACTGATGCACTACCGGCGGCTCGCTGCAAAATCCGGGCTCCAGGGCAGGCACGAACCCGGCGTGACCTGCGACTTTACTCTCGG # Right flank : TCCTTGAGTCCGGCGAGAAGTCCGCGGACGTCGTCGGCGGCTGCTCGGGCGGCCAGGGACGGGGCGCGCCCTTTCTCTCGCTCCGGGGGTGAGGCGCTCCCGTGTCCGGCTGCGGTGGCGAGGGAGGTAAGCATGCGCTCCAGCTCCTCCGGGTCGACCACGCCCTCTTCCGTATCGCCTTCGGGCACGATCTCCCCGCTGAGCTCCTTGTCCTCCTGACTCGCCCGTCCGGCCGCCTGCCCAGCACTCGGAACCGCGGCCGTCGAAGAGATGTCCTGATCTGGAAAGCTGCGGCACATCCCGCCGCACACCGCGCAGACTTCACCGGGGATGTTGCGGATCGAGGGGTGAGCCGGGCAGGTACCGGCCGCTCTCCCTTCGGGGTCGACCGCGAATCCGGGGATGGTGTCCGCCGGGTCCCGCTTCCCCCACTCGACCCCGCCGAACCCTGCCGGAGCCGCGAGGCCGCCGGCGCGGGCGCCGCGCAGCCTCGGCGGCGG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCATCAGCCCTATGAGGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 10 1478551-1478841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1478551 30 100.0 34 .............................. GCCCGTCTCAGCGTCGGGTACAAGGTGCGCAGCG 1478615 30 100.0 36 .............................. CGCGGCAGGTCCTCGGGCAGCGGATGCTGCCCGGAA 1478681 30 100.0 35 .............................. GTGTCGCACCGCTCGAATGAGGCGGCCGCGTCCTG 1478746 30 100.0 36 .............................. GATGAGGTCAGCAGCCGATCGATCACGCCGCCTCCC 1478812 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GTCGTCATCAGCCCTATGAGGGATGGAAAC # Left flank : CGGTCGCCGCCCTCCCTCGTCCACTGGTCGGCGATCGCCTCCAACCGGACCAGAATCGACGCGCACTCGGCGGGTGAGAGGTCGCCGCCGCCGTCATCCGGATGGTCGAGGACCGGCTCCAGGGCTGTGCGAACCTCGCTCCACGGGCGATCACCACCGAAGCCCTGCATCTCGGAGAGGGAGAACCCCTCGGCCTCGGCCAGACGCTCCCGGAACGCGGCGAAGCCGCTGTAGGACCAGGAGACGTCCGGACTGCCGGTGTCTCCGTCGTCCGGGTAAAGGACCAGCCCCATGTTCCCTCCCCGGGGTGAGTCGTCTGCTACGGGATCGGTACGCTGCCAGGCGAGCTTGCGGAGAGGAGCCTCTCTGGCTGTAGGGTCAGCTCTGAAAAACTGAATAGCAACGTTCTGACCAGCACTGATGCACTACCGACGGCTCGCTGCAGAATCCGAGCTCCAGAACAGACCCGAACCCGTCATGACCTGCGACTTTACTCTCGG # Right flank : CTGAGCGGCCAAGGTGTGCACCTCGCTCGTCAGGTAGGCCCGCTCCAGCTTGCCCCACTGGGCATAAGCGCGCCCGGCATCGACGAGCAGCGCGGCACGGCGCTCCACCACGTCGATACGGCCCAGATCGATGCGGCGCGCCCGCTCCGCTGCAGCGCCGGCGTCGCTGGGCTCGATGTAGGCGTTGCCCCGGTGCAATTCGACGTTGGTGGGGCCGAACGCCGTCCAGTGGTGGTTGAGATCCCCGTCGAGGCAAGGTCCGGCGTCGGCCGCCTCGTCGAATGGAAGATCTGGCAAATCCACGACGAGAACGGTCGCCCCGAGGGCTGGATCGCCATCCGGCCCATTGACGGCGACATCGAGCCGCGATCGTCGCCGGCACCGCCGCTGAGCTCGCCGCCCGGCTGATCCGCCGCGGCCCCCAGGTTCCGACCAGGGCCGCCTCACCCCAGGTAGGGCGCCTCTTCCCGCCCGAACGCGTGGCGCAGTCGAAGGCGCTG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 11 1483407-1483762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1483407 30 100.0 36 .............................. TACATGCCGCTCTTCTGCATGAGGACGTAGGTCATC 1483473 30 100.0 35 .............................. ACCGTCTCAGGAGTCCGTACTGCTGTATGGGCTAG 1483538 30 100.0 34 .............................. GCGGCCCCGTAGGGCACGAAGTTCGCGGAGGCGA 1483602 30 100.0 35 .............................. CTGGATCGGTGCGATGACCCCGGGGATCCCCGGGG 1483667 30 100.0 36 .............................. ATCCGGGCCCGGACCCTGCCCGGGGGCAGGCCGGTG 1483733 30 90.0 0 ........................A..G.T | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.3 35 GTCGCCATCAGCCCTATGAGGGATGGAAAC # Left flank : GCACGGGTGGAGAAGGCACGTGCGTCCTACCAGCGCCCCGACCTCGACGGGGTGACCGTTGCCGTGGACACCGTGACCGGAGCAGGCGTGTTCGTCGAGGTCGAGGTCATCGGCGAGAACGCCGAGACGGCCGCGATTCTGATGGCCGAGGTGGAGCAGGAGAACGGTCTGGACGCCTACCCGGTGGTGGCCCTGCCCTACCGCGACCTCGTCCTGAAAACGGACAGCCACCTCACCCGCAGATAGAGCCGCTGCTCACCTCGGGGATGTTCGACTTGGGAAAGCGTTAGAACTACTCCTTGGGGGTGAGTCGTTCGCTGCTGGAATCGGTACGCTGCGAGGCGCAGCTTGCAGGGAGGAGCCTATCTGGCTGTAGAGTCGGCTCCGAAAAGCCGAATAACAACGTTCTGACCAGCACTGATGCACTACCGACGGCTCGCTGCAGAATCCGAGCTCCAGAGCAGAGACGGACCTAGCGTGACCTGCGACTTTACTCTCGG # Right flank : TCCCGAGATCTGCCCTCACGGGGGGCAACTGTAGGCCCCATCCCCGTCATACCTGCTGAGCTGCTACTTCGACCCGGTCCAGCACTCGGCGTTGATCTCGGCGTTGTTGCTGTCTCAACCGGCTTTGAGACAGCAACAACGCCAAGATCAACGCGGAGGAGAGGCGGGCGGCTGGGCAGTCCGTCGAGACGTCCGCCCGCACCGACCGGTCCCCGCCCCCGACGGTACGGGACCAGGGCTCGCGGGATCGGCTTCAGCCCAGTTCCCGCAGGAACTCGATCACGGCGGAGGTGACCTCCTCGGGCCGGTCGCGTTGCACCCAATGGCCGGCGTCGGGGACGACGAGCAGGCGCGCATCCGGGATGCGCCGCGCGGCCGCCCGTGCGTGCGCGACGGGCACCCCGTTGTCCCGGTCTCCGTGAACGATGAGGACCGGGCAACCGATGGAGTCGAGCCGCCCCGTGTAGTTCGTCTTCAGCCGGTTCCAGAGGATCTGATCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCATCAGCCCTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 12 1486052-1486277 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 1486052 31 100.0 34 ............................... TCGCCCAGGGCCGCAACAACGCCGAGGCCTTCGA 1486117 31 100.0 34 ............................... TAGGTCGCGTGCGGGTTGGTCGCCTGGACGGCGG 1486182 31 100.0 34 ............................... CCGTAGGCGTCGCACAGCCCGTGCACCAGCTCGG 1486247 31 87.1 0 ..................G......C.G.G. | ========== ====== ====== ====== =============================== ================================== ================== 4 31 96.8 34 GGTCCCCATCAGCCCTATAAGGGATAGAAAC # Left flank : CGGGTTGGAGGGGCTCGCCCATACCCTCGCCTACGATGCCGCCTGCCTGGGCGACGGGCGCCCGCCCGCGCCGCGGTTCGCGAAGATCACCCAGCCGGTCCTGGTCGCCACCGGCGACAGCGGCGGCGACCCCAACATGAGCGGGCTTCCGGACGACTTCCTCGGCCGGGCCGCCAACGCGATAGCGGCCTCCATCCCGCACGCCCGTCGCGTCTCCATCCCGGGGCAGCCGCACGTGGCCGACCCGAAGGCGATCGCGCCGCTGCTCACCCGCTTCTTCGAGGAGTGAAGGGATGAAGAGTGTCTGCCCTGTACCTGCGGGGGCGCGCCCCTCCGCATGGCTCTCTCGCCCTGCCCTTCTTGCTCCTGTAGGGTCCCGGGCGGGAAGCGTCGTCGGCGGCAACGCTTCTACCAGCACCGATGCACAACCGGCGGTCCGCTGCAGAATGGCGTCGCCAGAGCAACTTTAGGGGGCTTGTGACCTGCAACTTTACCTTGGG # Right flank : CGCCTTCTGCTCCGCGCTTCCGCCTGCCGGCGGTCCTTGCGCGCCCCCGTCCGCAAGGGCCGTCTCCTAAACCGACCCCCTAGCCGGCCCCGACGCTCTACCTGGTGGTCTCCGGCGCGCTGGCGCCCGAAGGGGTGCCGGAGCTGGTGGAACTGCTCCAGGACGACGGCTGGCAGATCGCCGTGCTGTCCACCCCCGACGGCACCCGGTTCCACCGGCCCGACCGGCTGGCCGAGCTGACCGGCGAGCAGGTGCGGGTGGAGTACCGGCTGCCCGGCACCGGGGCGCCCCTGCCGCCGGCGGACGCGGTGCCGGCCTGCCCGCTCACCTTCAACTCCACCAACAAGTTCGCCCAGGGCATCGCCGACTGCTTCGCCATCGGCCTGCTCTGCGAAATGGCCGGCCACGGGGTGCCCACGGTCGTGGTGCCGCACTGCAAGCCCCAGCTCGCCGCACACCCCGCCTTCCAGCGCTCCCTGGAGACGCTGGAGTCGATGCCG # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCCCATCAGCCCTATAAGGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 13 2139728-2139394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2139727 29 100.0 32 ............................. AGCGGGTCGAGCAGCCCGGCGGCCGCGGTGGT 2139666 29 100.0 32 ............................. GCGGCGGTGGCCGCGGCGAAGGCGGGGTACCG 2139605 29 100.0 32 ............................. GGCGAGCGCCGCACCACCTCGGTCGGCCGCGC 2139544 29 100.0 32 ............................. TCGCGGGCGGGAAGGTTCTCCATGTCCGTGAT 2139483 29 93.1 32 ........................A..T. CGGCCGAGTTGACGGTGGGCACTGACATCGCG 2139422 28 79.3 0 .......T.A.C........-.C.....T | C [2139397] ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GGTGGTCCGACGAGCGGGTGCGCGGGAGCGTCTTCACCACCGGGGCCAGCCTGAAGATCACCGCGTTCGCCGCCGGCGCGGCGCTGGCCGGACCACTGGCCGCCCGGTCGCTCACCGGGGCGCTGCTCGCCGCAGCCTGCCTGGAACTGCTGGCGCTGGCGGCGTTCGTGCTGATCACCCTGGTGCTGCCGGGCGGGGCGGCCGATGGGCACCCGGACCGCACCGCGCCGGGCAGCGGCGCCGCCCCGGCTCGGGAGCGCTGAGCACAGCTCCGGTCGCCTGCAACGGGTCCGGCCCCGGCGACCGCCCCGGGACCCTGCCGGGAGCGCATAGGCCTGGGGGTCGGCATGAGGCCGGACTCTGGAGCCGCCGGTGACATCACCTTGGAGCAGCAGGACGCAGAGGACTGGGAGCAGCCGACGTTCCGATCCGGGAAGACCTCGATGGGTAAAGTGGTCCAGAACGCCCTGACCCCGAGAAGAACCCGCAGGTCAACGAGA # Right flank : GCGCAGTCCCACTGCCCGAGTCGGAACCCGCCTCGGTGGAAGGTGCGCGGTGCTGCGGTCAGCCCAGCCAGAGAGGGCCGAGCAGGAAGGCGAAGCCCAGCGGGCCGGCGACGGTGGCGATGGCGAGGAAGACGAACAGGCCGGTGCCGAGGGTGAGGACCGAGACGGGGGAGCGGTCGTCGACCCAAGCGGCGACCGGGCGGCCGGTACCGAGGGAGGAGGCGTAGGAGGCCGGACTCCAGGCGCGGCGTACGGCGCCGGCGTACTCGTACTCCACCTGCGCCTGGGAGGCAGGGGCGTCGTTGAACTGGACGTGCGGGTGCCGCCGGAAGGCGGTGACCCGGCCCTGGACCCGGGTGCCGCGGCGGATCCGGGTGAGCACCCCGGCGAGCTTCCCGGCGGCCAGGAACGGCAGGGCGGAGAAGACGGCGCCCACCATGCGCAGCGGGTGCGCGGCGGGGGAGTCGGGCGCCTGGGTGGCAAGCGCGTGCGCGCCCAAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 2929087-2929478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2929087 29 100.0 31 ............................. GGGTGAAACTCACCGCCCCTCCCGAAGGTCG 2929147 29 100.0 32 ............................. TCTAAAAACAAATGGCTAGCAGGCAGGGGTCT 2929208 29 100.0 32 ............................. AGCTCCAGGTAGGCGGCCTGGTCGGCGCTGTC 2929269 29 100.0 31 ............................. CCCCATGCTCGATCGCCTGCGCGCCCGCCTC 2929329 29 100.0 31 ............................. CGGGCCAAGGGCGCCATGGCCCAGGGCGAGT 2929389 29 100.0 32 ............................. ACCAGGTCACCGGCGCGGCCTTCAACGAGAAC 2929450 29 89.7 0 ........................A..TT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GGCGTCCGGCCCGCTGTACGGCTCGTTCTTCCGCACCACCGGGAAGAACCTGGAGGGCGCCGAGCCCGGCCTCGCCGAGCTGGCCGCGGCGCTGCGCGCCGGCCTGGAGGCGGTCCAGCGGATGGGCGCCGCCCAGCCCGGCGACAAGACGATGGTCGACGCCCTCTCCCCCGCCGTCACCGTCCTGGAGCAGGCCGCGGAGAAGGGCACGCCCCTCACCGAGGCCGCCCGGGACGCCGCCGGCGCGGCCTACGACGGCGCCCAGGCCACCATCCCTCTGCAGGCCCGCAAGGGCCGAGCGTCCTACCTGGGCGAACGGAGCATCGGCCACGAGGACCCGGGGGCGGCCTCCGCGGTCCTCATCTTCCGCTCCCTCGCCGAGGCCACCGCGGACTGACCGAGGACCACGCGGAGGCGGGCCCCGGCCCGCCTCCGCACCACGAACATGGAAAGTTGCACGAACCGGCACCTCCGCCAGAGAAAACCGCAGGTCATCGAGA # Right flank : TCAAGCCGTCGGGGCGGCTCAGCCCTCTCCGGTGAGGCGCTCCACAGCCTTGACCAGGGCTTCGGTGTCGTCCGAGGTGAGGGTGATACCGAAGACGTCGCGGATCGCCTCGGGGATCTCCTCCGGGGTGAGGTCGCGGTGGTCGATGGTGCCGTCGGGGTGTTCCTCGGTGAGGGCGGTGTCCATCAGCCGGCGGCGTACCGAGGCGTCGGTGTGCTGGACCATCAGGCGGCCGGTGAACGCGGACCTGGGCGAGGTGGACAGGTAGTGGCTGAGGATCGCGTAATCGGTGCGGTAGCGCGGGTCCTCGGTGAAGCCGTAGAGGTCGTCCCAGGTGTCGCCGGTTCGGGCGGCGAGGCCCCAGACCCCGTCGCCCTCGTCGGTCAGGCGGTAGGTCCAGTCGTCCTGGGCGGTCTCGCTCACCGGGGTGCGCAGCGGGATCGGGTAGAGCGGGCCGCCGCCACCGAAGCCGGTGTCGGCGAGCACGGTGCCCGAGGGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 3281046-3280772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3281045 30 96.7 31 .............................G TGGGCGGGGCGGTCGCCGCCCCTGGGAGTGT 3280984 30 100.0 31 .............................. GGTCGAGGGCCGCCCGGTGGTGCACGTTCAC 3280923 28 93.3 31 ........--.................... CCTCGGCCATGAGGGCGGGGGCGCGGGTGTA 3280864 30 96.7 31 .............................C GCCCCCGATCCTGCCTACACCACCGCAGCCT 3280803 30 80.0 0 ................G.A..T....T.GA | C,C [3280778,3280783] ========== ====== ====== ====== ============================== =============================== ================== 5 30 93.3 31 CTGCTCCCCGCGCGCGCGGGGATGGTCCCT # Left flank : CGCAGGTAGGGCACGATGGCGACTTCGCGGCCGTCGAGGCCGGTCGCGGCGATCTCGGCGGACGGCCGGGTCCTCTCCGGCGCGGTCGAGTAGATGAGCGTGCCGAGGAGGAGGTAGAAGGCGGCGGCGACCGACAGCGGGATCACGCAGACGAACAGGACGGCCCGCGCGAGGAGGGAGCGCGGGCCCTTGCCCGTGCTCGCGGCGGCAGGGCGCTCTCCTCCACCGCCGGAAGGGTCCTCATTCGGGGAGTCGCCGCCAGAGGGCTCCGAACCGACCGCCACCGCGCTCTCCCCTCGGACCGGAGGACAAAAGTAGAGAAAGCATTCCAGGCCTTGGTCGCCGAGGGGTCACGAGGATGTCGATTTACGTCTTCCGCCTCCGGGACCCACGGAAACGAAGGGAGCCGTTGAGCGCCCTGGAGGAAGGCGGGGAGGGGCGGGATGCGGCAAGTGGTTGAAATCGGCCCTCTGCCCCGGAAGAATCCCAGGTCGGCGAGA # Right flank : AGGCTAGATCTTCAGCACCGGGTGCAGGCGGGACATCGTCCAGGTGCGGCGGCCGGCGGTGGTGGACCAGCTCAGGAGGAGGGCGCCGGCGGTGTAGGCGGCGAGGACCAGGCAGGCGTGCAGGACCACCGCGCCGCTGCCGCCGCTGAGCAGGTGGCGGATGGCGGAGACCACCCAGTACATCGGCGTATAGGGCGCGATGGCCTGGAAGAAGGCGGGGCTGGTCTGCAGCGGGTAGGTGCCGCCCGCCGAGGTGATCTGCACGATCAGCAGGACCAGGACGATCACCTTGCCGGGCGCGCCGAATCGGGCGTCCACCCAGTGCACGATCGCGGTGTAGGCGGCGGCGGTCAGCGCGAGGAAGCCGAGCAGGCCCGGCCAGTTCACCGACTGCAGGCCGAGCAGCAGGTGCAGGGCGGCGACCATGACGAAGCCCTGCGCGGTACCCAGGACCAGGGCGGGCAGCCAGCCGGACAGCGCCAGCCGCCAGGACGGCGCGG # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGCGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 3283968-3283694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3283967 29 100.0 32 ............................. GAAGAGGAAATGCCCGTCGACAAGGCGGTCCT 3283906 29 100.0 32 ............................. CCGCCCCAGGGACGGACCCTCCCGGAGTCTGG 3283845 29 100.0 32 ............................. CGCGGTGCACGTGCCCGAGGGCCTGGACGAGG 3283784 29 100.0 33 ............................. CGGGGGGGCGGGGCGCTGCCTGTGGGTCTTGCC 3283722 29 79.3 0 ..............T......T.CT.G.T | ========== ====== ====== ====== ============================= ================================= ================== 5 29 95.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CGTTGTGCGCTCCGTCGGTCTCGGGGTCCGCGTCCGGCACGTCCTTCGGTGCGCCGCGGGGCACCGACGTCCGAGGCACAGGTTAGAGCACCGGCCCCGCCGCGGGGAGGAGGGGCGGCCGGGGCAGGCCACGAGGGGGACCCATGACACCGGTCCCGGGCGGGCCATGACACCGGTCCCTCCCGAGGATGACACCGGGGGTTCCCCGGCACCGCCTTTGGTCGTAGTGCGGATACGCTCCTCGGCCGATGCGCGGACCCCGGCCGGCGCCGTACCTTCTCTATCAACGGCGGAGGCGCGGAATACGGGGCCGCGCACCCGCCACACGGGGCCCGGACGGGCGCGCTCGGACCCCGGAATCGCCCGGGCCGGAACCTCACGCGGAGGTTCCGGCCCGTTGTGCGTCCACAGGCCGGCGAACCGTTCCGCATCGCGGAGGAGACCGATGGGAAGTGGTTGAAAACGGCCTCCCGCCCCGGAAGAATCCCAGCTCAACGAGA # Right flank : CAGGTCAGACGCCGAAGTAGTTGGTGCGGCCGATCACGGCTCGGTGGGTCTTCCCCTCCTCGTCGATGATCAGGACGGAGGCGGCTAAGGGGCGGGGGAGGACCGGGAGGTCGAACAGGGGCGGGAAGAACGAGCTCGTGGTGAGCACCGTGCGGCCGGATGGGGCGGTCATGGCGCGGTCGAACCGGTGGACCGGGGTGGCGGAGGCGGCCTCGCCGGTCTCTGCGTCCACCACGGTGAGAACCTTCTCCTCCGTGTTGGGGCCGGCGGCCCCCTCGACGATGACGTGGCCGGTGGCGGTGCCCGCCGTGGTCATGGAGGTCTCGCTCTCCCCGGGAAGGACGCCGTCGAACGGCCACTCGGCGTCGGGGCAGGCGCCGGTGTACGGGCGGTTCCAGGTCACCTCCTGCACGAAGCCCGGCGTGTAGAACTCGGTGCCGGTGATCTCCCGCGAGTCCGTTTCGCCTGCTTGCGCGATGTAGAGGTGCCGGGCGGGCACG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 17 3313148-3313425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3313148 30 100.0 31 .............................. GCTCTTCCCGTCCCAGCCGCCATGGCCCTCA 3313209 30 100.0 31 .............................. CCGCCGCCCTGTGGACCGACTTCATCGGGCT 3313270 30 96.7 31 .............................T GCCAAGAAAGCGGCGCCGCCCCTGCGACAAC 3313331 30 96.7 30 .........................C.... AGATCGCCCTCAACCGCTGGGCACGGATGA GCGT,T [3313346,3313362] 3313396 30 90.0 0 ........T................T..G. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 96.7 31 CTGCTCCCCGCACGCGCGGGGATGGACCCG # Left flank : ACCATGTTCGCGGTCTCCGCCGCGGAGATGCTGCGCTGGCTGCGCACCCGGGACGACGTCACCGCGGTGGACGTGCTGCCGCGCTACCTCCCCGCCTGGATGAAGCCGGTGGTGCACGTCCCCGGCGCACGCGAGGTCATCACCTGGAACCTCCTCCTGGTCCTGCGCAAGCGCGGCTGAGCGGCCCGGGACCGCCCGGCCGCCCCATCGGAGGCGCGGACGGGCCCCGCCCCTCCACCGTCCGCCGAGCGACCGCCGGAAGGCTCCGAACCGGCCGCCACCGCGCTCTCCCCACGGACCGGCGGACAGGAGCCCTCCCCGCCTCCGCCGCCAGGGAGGCGCGGAGACGCCCGGCCGCCTCTTTTCCGTACCTACCGGCCGACACCTACCGGCCGACCGAAGAACCCACCGCGCGCCCGATGAGGAGATGCCACGGGCGCGGAACACGGCGAGTGGTTGAAAACAGCCCTCCGCCCCGGAAGAATCCCAGGTCACCGAGA # Right flank : GGATCACCGGGGCATGCGCCGGGCCAGCCGGGTGGATCTTCCCCGTGGGGCGGGGTCTGAGGCGGCGGGCCGGTTCCGCCGGCCGGTGCCGGGGGTGTCCGGGGTCCTGCCGTCCTGCTCGGGGGGCTCCGCGTCGGCCTCCTCGCCCGCTTCGTCCTCCGAGGGCGCATCGTCCTCGTCCGGTTCCTCGCCGCGGGCGCGGAACCTGAGGATGGGGGCGGCGGCCAGGGTGAGCGCGCCCAGGGAGCCCAGGGCGACCGGGCCCCAGACGTGCACGGCCTGGAGCAGCAGCCGGGTGCTCCCCGCGGCCTGGGCGTAGCCGGCGACCTGGCCGTCCTCCAGGGCCAGGTCGGCCTTGAGCAGGGTGCGCTCGCCGCCCTGCTCGCCGCGGAGGGTCTCCACCCGCTTCTCCTCGGCGTCAACCAGCCGACCGGAGACCGGCTCGATCCGGTAGGTGCGCTCCACCTCCAGCCAGAGGGTCGCGGTGACCGTGCCCCGGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 18 3890191-3889979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3890190 29 100.0 32 ............................. AAGTGCGGCAGCGGGCGCGCCGATCGAAGCAG 3890129 29 100.0 32 ............................. CACCTCCCAGGAGGCAGGCACCAGGATCGCGG 3890068 29 100.0 32 ............................. GCGGTCGCGCCGGCGGTCGCGGCGGCCAGCCC 3890007 29 86.2 0 .................C......CAG.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 ATCCGCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCTCGCCGGCCGGCTGCAGGCCGTGCCGGACGGCCTCGTCGGCGGGGGCTTCGTGCAGGGCGCGGAGGAAGAGGCCGAGGCGGTGACCGATGGACGCGGAAGCCTCCCCGGATTCGTCGAGCGGTTCGCCGGGAACGAACTCATGCCGCACGACCAGCGGGTCGGCGCCGATGATCTCCGGAACGGGCACCGGCAGCGGGAGACGGGGAGCGAGCCACGGCATCAGGCTCGCCTCCCGGCGGAGAAGCTCCGCTGACGAGGGGCGCCGCGGGCGCCGCTCGACCCAGCGTCCGTCGACGAGTACGGCCTTGCTGTCCCAGCCACCGGAGAACTCCATCCGGGCATCGTAGGGCCCGGGGGCTTTGGGCGCCGCATGGTTTTCTGCGGCCGCGGGCCTGCCGGTCCTGGCCGAGCGGATGGGGGATGCGCCTCTGTCGGGCGCTGGATGCGAAGTGGTTGAAAACGGCCCTCTCGCCCGGGAGAATCCCAGCTCAGCAAGT # Right flank : ACGATCCCCGTGGTTCAAGAGAGCCGGCCGGTGTGCTCGGCCATGTTCCGGGAGGGGCGGCGGGGGAGATTCGGGACCGGGGCTACTCCGCCCGGGTGAAGCGGATGTCGTAGTCCGCCGCCTCCGGGGACCAGAAGCCCAGGAGGCGGGCCGCCTCCTCGGTGACCGCGCCGCGGGTCTCGCCGCGGGTCGGGGTGAACTCCTCGATGGTGAGGGCGGTCGTGGTCTCGTGCTCGGTCACCCGCCACATGGCGCGGACCTCGCCGTCGACCAGGACGGTCGGGGCGACGGCGGCGCCGACGCAGACGCGGCGGCGGATGTCGTCCGGCATGACCCGGGTGCGGTCGTGGTAGGCGACCAGCAGGTTGTCGAGTTCGGGGAGGAGGCGCACCGGGGCCTCGGCGTCCGGGGGGACCAGCGGGAGGTCCGGCAGGTCGAACAGTTCCCGGCCGGTCTCGTCGGTGAAGGTGCGCAGCTCGGGGCGGAGCTCTTCGAACGCC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 19 3896285-3895889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3896284 30 96.7 31 .............................C GCCGCGCGACCGCCGCGGCCACCGCGAGGTA 3896223 30 96.7 31 .............................T TTCCCGGGAAGGAATTTGTGTCACCGATTTT 3896162 30 100.0 31 .............................. AGAAGGCCCGCCGGAGTCGTGACCTCCGGCG 3896101 30 100.0 31 .............................. GTTTGGGAAGCGGCTCGACGTCGATCATCCG 3896040 30 100.0 31 .............................. TCAACGCCTACGACTGCGACCAGGCCGACAT 3895979 30 100.0 31 .............................. GCAAGCGCCTGGGCCACTCCAGCCGCTACCG 3895918 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 7 30 98.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCGCCGCCGATGATCCGAAAAAGGCCTGGGCCGAGGCGGTCGCCGCGATGCAGGACCTGCTGGACGACCCGGAGCGGGCGGGCAAGGAGTACGACGGGTACTTCGGCCGCACCGGCATCGAGAAGACCATCGACGAGTTCCTCGGCGCCGACCTGGTCGTCCACGCCTGGGACATCGCCCGGGCCACGGGCCAGGACGAGGCGCTCCCCGCCGAGGAAGTCCACAGGCTGTGGACGCAGGCCCACGAGTGGGGCGACGCCATCCGCATGGAGGGCATCTGCGGCCCGGAGGTCCCCGTCTCGGACGACGCCTCGGAGCAGGACCGCCTGCTGGCCTTCTTCGGCCGGAAGCCCTGACCCGGACTCCCCGGACCGATCCCACCGATTCGGCCCGGGACGCCCGCCACCGTGGCGGGCCTCCCGGGCCGAATGGGGCTCCTCCGGGGAGCGGAAGTGGTTGAAAACCTGTCTGAGCCGAGGAAGAATCCCAGGTCAGTCAGG # Right flank : GACCTGCCTCAGATGCTCGACGTGTCGATGACGAACCGGTAGCGGACGTCGCTGGAGAGCACGCGCTCGTAAGCCGTGTTGATCTCGTCCGCTCGGATCAGCTCGATCTCGGCGCCGAAGCCGTGCTCGGCGCAGAAGTCCAGCATCTCCTGGGTCTCCGCGATGCCGCCGATCATCGAGCCGGCGAGCGTCTTGCGGCCGCCGATGACCGAGAACAGGTTGATCGACACCGGCTCCTCCGGGGCGCCCACGTTCACCAGGGCGCCGTCCGGCTTGAGCAGGGACAGGTAGGCGTCGAGGTCCAGCGGCGCGGAGACCGTGGACAGGATGATGTCGAACGAGCCGGCCAGCTTCTCGAAGGTCGCCGGGTCACTGGTGGCGTAGTAGTGGTCGGCCCCCAGCCGCAGCCCGTCCTCCCGCTTGCGGAGCGACTGGCTGAGCACGGTCACCTCGGCGCCCAGCGCGTGCGCGATCTTGACGCCCATGTGCCCGAGGCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 20 4524285-4524923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4524285 29 100.0 32 ............................. GACTCCTCGCTATGTCATCCGCACACTGCAGA 4524346 29 100.0 32 ............................. AAAGCCAAGGGAGCGCCAGAACCCCACCCTAC 4524407 29 100.0 32 ............................. TTCTACGAGGCCACCGAACGCCTCTTCGAGGG 4524468 29 100.0 32 ............................. GTGGTCGAGGAGGCCGACCGGATCAACGAGTA 4524529 29 100.0 32 ............................. CGGTGCCGCTCCCGCAGGCGATCAGCCGAGCC 4524590 29 100.0 32 ............................. GACGCGATGGGGCGCCCGTCGACGGTGCGGAC 4524651 29 100.0 32 ............................. TGCTCCTGGCCCTGGGAGAGGCGGCCGGCCGC 4524712 29 100.0 32 ............................. ATCTGATGTTCGCCCCCAACGATTCCTGGCGC 4524773 29 100.0 32 ............................. GCCATCCGCGGCACCGTCGACGGCCTGGCCGC 4524834 29 100.0 32 ............................. CTCACCAGCTCCCCCGGCGTCCCGGAGTCCTG 4524895 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGGAGCCGCGGCCGCCGGCTGCTGCACGACCGCCCGGGACTCCTGACCCCGGTGCCGGACGAAAGCGGACCCGCCCCGCGGTCCGGCACGGTTCGGGCCGCAGACGACCGTGGCCCGGACCCGTTCTCGGGACGGGGATCGACCCCTGACCCCGCGGACTGAAAGCACTCCGCCGCCCTTGTAAGGCGGGTGTGCCTCGCCCCCCTTCGTGCGCTTCCTGCTCAAGGGCGGACGAGAGAAGGTCCTCGGTGCGGAGCTCTCCGGTCAGATGCCTCCACGAGGTGAGTGACAGTGCCTTCCGGATGAGGCAGATGCGGAGCGATCGGGGCAGGACGGCTACGTGGAGCCGTAATCGCGTCTTGTTCGGGTACCGATGTTCGCTAGAGGTTCGAGACAGCGAGACGGCCGCGGGGCGCGACCCGAGCGGGTGGTTTTGGGGCGAGGTGCGGAAGTGGTTCAAAACAAGAGGTTGCTTGGCATATCATTCCAGGTCAGCGAGT # Right flank : CGCCTTGGCCAACCTCACTTGCAGGTGTATGTCTCCACTACGAGAAGACCAGGCAGGCGCCATCTGCGGTGATGGTGAGGACGCCGGAGCAGACCGTGGTGTTTCTGCGCGGGGTGCGGCGGGATCGGTTGTATCTGCTGTTCCACCTGCTCACCTACAGGGGAAAGCGGCGGCCGGAAGAACTCCCGGCCGTCCGCGTCTGCTCCTCCTTTCCTACTTCCGCATCCCACCGGTGCCAGGAGGCGTGTACCCGGTGGGCGGCCAGTGCGCCTGCGGCGATGGTGACGACGGCCCCGCCCAGTAGGACGGGCAGGGCGTCCCCTTCCCCGGGGTGGCCGGGGAAGACGAGCAGCAGCCAGGCGGGCGGGAGCACGAGCAGCACCCGGCCCCAGGCGGCGGGCAGCACCCACGCCGCCACCGGCAGCAGGACCGAGGCCGCGCCGGCGGCCTGCGGCGGCCCGGTGGGCCCCTGGCACGGTTGGGGGATCCGGGGCGGTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 21 5126429-5126701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5126429 30 96.7 31 .............................A TGCCCAGCACCGGCAGCAGCACCGCCAGCGC 5126490 30 100.0 31 .............................. CGGCGATCTTGGGGCCGGGGTCGGTGCGGGG 5126551 30 96.7 31 .............................C CGGACGAGGACGTCGCCACCGCGACGATGCT 5126612 30 100.0 31 .............................. CCTGGCTCGAAGCGCTCGCCCCGGTGGAGGG 5126673 29 76.7 0 ..............TA......-...TTTT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGCAGGACATGGGTGCCTACAGCCGCGGCCAGAAGATCGCCGGGCGGGCCCCGCTCCGCCTGCACCCCGACGACGCGGCCGCCCGCGGTCTCGCCGACGGCGACGTGGTCCGGGTCCACAACGACCGCGGCAGCCTGCTGGCCGGCGTCCAGGTCTCCGACGAGCTGCGCCCCGGCGTCGCCCAGCTCTCCACCGGCGCCTGGTACGACCCGTCCGCCCCGGACGTCACCTGCGTCCACGGCAACCCGAACGCCCTCACCCCGACGACCGGCACCTCGGGCCTGTCCCAGGGCTGCACCGGCCAGCACGTCCTGGTCGAGGTCACCCGCTACCGGGGCGACCCGCCCCCGGTCCGGGCCCTGGAGCCGCCGGTGATCATCACCCTGGAGCAGCAGGACGCGGAGGGCTGGGAGTAGCGGCAGGCCCGACCCGGGGAGACCCCGATGGGTAAAGTGGTCCAGAACGCCCCAACCCCGAGAAGAACCAGCAGGTCAACGAGG # Right flank : TCGGCGTCGCAGGTGTGGGGTGAAGGGCGTCACCTGGGGCGCCCGCTTTTTCCTGATTGGTGGATAGGTTAGCCTCTACTAAGTCGGCCGCCGGACCTGTTCACGGGGTCCGGTGGTGTGTGGTGTCCGGCGTCGGTCGGACGGCTTGGTGCTCGGGAAGAGCCGGAGGAAGACTGTGTCCTTGGGATGGCGGCTGAACCGCCCCGCCTGTCGCGGTGGGGCCGGATGAGTTCGGAGCGGACGACGGCCGTCATCGGAGCGTCGGCGGAGGAGGCCCGGGCGAAGGTCGGGCGCGAAGAGGCCGCCGCGGCGCTGGAGGAGCGGACGCGGAGCCATGTCCGGACCCGGGTGGTGCGCACCGTCGGGCTGATCGCGGCCCTCGGGGTCCTGGTGGTCTGCATCGGATTGAGCGTCTCGGTCGGCGCCAAGCCGATCCCGCTCTCCACCGTCTGGGACGCGCTGTGGAACAACGACGGCTCCTACGACCACAGCGTCATCTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 22 5226223-5225733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================== ================== 5226222 30 73.3 94 .C..A...T..A...C......A..G..T. TGAGGCGACCGCAGCGGAGCGACCTCGTCCGGCGCCGATCCGGGAAGTGGTTGAAAACCGCCTCCCCGCCCGAAAGAATCCCAGCTCAAGAAGG C [5226200] 5226097 30 93.3 31 ............................TG CGTGGCGTTGGGGCCGCGCGAGGTGATCAAG 5226036 30 96.7 31 .............................A ACTTGTGGGATGCCGTCGCCTCGGCTGCTAA 5225975 30 96.7 31 .............................T GAGATCGCCACCGCGGAGGACTTCCGCGCTG 5225914 30 100.0 31 .............................. ACGTCGCGCCTGATCAGGGTGACGGTGTCCC 5225853 30 100.0 3 .............................. GGC Deletion [5225821] 5225820 29 73.3 28 ...........ATG.....A-.C.....AG GTCTCCATCTGACTACGGATCAGATGGA C [5225795] 5225762 29 73.3 0 TC..CG...-.............C....GT | T [5225747] ========== ====== ====== ====== ============================== ============================================================================================== ================== 8 30 88.3 36 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ACCGAGGCCGAGCGGGTCCTGGACCGGACCTCGGTCACCTTCGCCGACCTGCTCGCCTCCCGCCTCACCGAGCTGCACCCGTCGACCTTCGTGATCCGGCGCAGCGCCCTGGTGGACGGCTGCGGCACCGTCGACGAGGAGCTGCCCGGCAGCTACGCGGAGGACTACGAGCTACTGCTCCGCCTGGCCCGGCGGGCACCGGTGCGCACCGTCCCGGAGGCGGGCGTGCGGGTGCTCTGGCACCGCCGGTCGCACTTCGCCGGCCGCTGGCGCACCATCGCCACCGCGCTCGGCCGGCTGCTGGAGCAGTACCCGGAGTTCCGCCTGGTCCCCCGCGGCCACGCCCGGGTCGCCGGCCAGGTCGCCTTCGCCGAGGCGGCGGCGGGCCGGCGCCGAGCCGCCCTCCGCTGGACCTGGACCACCCTCCGCTCCCGACCGACCGAGCCCCGCGCCTACCTGGCCCTGGCGGTGGCCTGCGGCCTCCGCCCCGAACCGGTCCT # Right flank : CAGTCCTCCGTGTCCTCGGAGCCCTCGGGGTGTCCCGTGGTCCAGCGGTCGCGGTTCTCCAGGGCCTTGGTGACCGCCTCGCGGGCCTGGTCGGGGATGCGGATGTAGGGGTCCTGGCCGGCGCGGGTGTAGCCGCGCTGGGCCGCCGGGTTCTCCAGGACGCGGAAGTCGCAGCTGGGCGCGGTCTTGTCGTCCCAGAGCTTGACCGCCTTGACCCGCTCGTACTCGGGCAGCACCTTCGGGATCTCGGCGTACCACTCCTCGGTGGAGCCCTTGCCCTTCGGGATGGGCACCGTGCCCATCTCGCCGATCATCACCGGCTTGGCCGGGTCGATGCCGTGCTTCGGGCCCTCCCGCTGGATCCACTCGTAGGCCGGGCGGAGCGCCTCCTCGAAGGAGACCACGTGGTCCCAGCCGTCCATCAGCTCGCAGCCGGTCATGTTGTAGGCCTCCCAGCTGATCCAGTCCACGTACCCGTTGCCGGGCCACAGCCCCGGGAG # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:-1.18, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 23 5989132-5990325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5989132 37 100.0 35 ..................................... GCGGACCTCCAGCGCCGACTCGATGGAGTCGCGGG 5989204 37 100.0 35 ..................................... GCGTGCAGGCACGAGGTGTCCAGGCTCGCCAGCGT 5989276 37 100.0 36 ..................................... TATAGGTAGGTCTACTCTCCGCCTACCAACCGGCTG 5989349 37 100.0 35 ..................................... TTCTTTGGCGGGGTTCCGGTGGTGGTCGCGGTGTT 5989421 37 100.0 36 ..................................... TGCAGCCGCTCGTGCCGGCAGCGCGAGTACGAGCTG 5989494 37 100.0 37 ..................................... GGCTACCGGGTGCGCTCCTGGTTCGGAGGGCTGTGGG 5989568 37 100.0 35 ..................................... CCGGGCGCAGTCCATCGCCGCGTCGGTCAGCTCGG 5989640 37 100.0 35 ..................................... ACCAGGAACACCCCGACCGCCAGGATGAGCAGCAG 5989712 37 100.0 35 ..................................... ATCGCCCTCCAGGCGGCCAACCTCTACAACCCGGA 5989784 37 100.0 35 ..................................... AAGCTGGTGAACGGTCCGGCGTCTGATCTCATGTA 5989856 37 100.0 34 ..................................... TTCGGCCCGCCCGGCGAGCGCCGGGTCGAGCGAG 5989927 37 100.0 39 ..................................... CTCGCTGGTGAGGGGGTCTGCCATGGTCGTCCTCCCGGG 5990003 37 100.0 35 ..................................... CTCTGAGTCGCGGCCAGCCGGGCTCCGGAGCGGTG 5990075 37 94.6 36 ..............C....A................. GATCGTGCGGGGTCGGGGCTGGCTTAGGCCGGCGCG 5990148 37 86.5 35 .....GA.......C....A...T............. ATCCACGTGCACGACCCCGAGTGCCAGGGCCCGCA 5990220 37 97.3 32 ..........C.......................... CGGCTCGCCAGCGACATCGACCAGGTGCACGA 5990289 37 78.4 0 ........T...T....A....C....A.GC..G... | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 97.5 35 GTGGCAGCCGTCCTTCGGGGCGGCTGAGGATCGCAAC # Left flank : GAATGGGTGAACCCCAGGGCTATTCCGCTGTTGGGGCGGGGTTGACCTGGGGTTTTGGGTGGTGCACCCGGCAGGATTCGAACCTGCGGCCGTCGGATTAGAAGAAAGCTCGGTTGCTCCCACCGTGTCCAGGTCATGCCGTCTGCTCCCGGCTTGTCCCCACCGGTATGACCGTTTCTTCCGCCCTGTACCGCCCCCTGCCGCGCAGGCCCGCTGCACCCGAGCCGCTACAGAGCGGACCAGGGACGGAGCGAGCAGCCGCAGCGGATGCCCACTCTGCGGGGAAGGGGGACATCCCTCTCTGAGAAGTATTCTGGTCGGCGTCGGCCGGCAGCGGCATCGCTCACCCAGCGGAGGGCCCCGGGGTGCTTGGGAACCCTCGGTGCCCATGGAATCCCAGGGAGGTTCCCAAGCATGTTTGGGAGGTTTTCAGGGACGATGACCGTTTCCGATCGGCGGTTCGGTATCGTTCAGCGGGGTGTTTGTGCTGTTCAGGTGCC # Right flank : CGGATAAAGATCGCGTTTGACACGGGCGACCCGCTTGATGATGGCGGTCTTCTGGGAGAGCCAAGGAACACGACCGGTACGTCAACGGGTCGGTGATCTATGTGGCCGGCGGTGGAGGCCGCCCTTATCGGGGACGCTGGCGTTCGTGCCGCGGAATGTAGAACCAGGCCCCGGTTCTTGAAGAGAAGAGCGAGGTAGAGACGGATTTATCGGATTTACCCTCCGGAGGTCGTTGCTCCGGTGTACTGTCCCGCTCGGTCAGTCACTCTCTGGAGAACAGCGGGATTGAAGAATGGACCTGTGGGGGCACAGCGCCAACGAGCAGGGCATACGGCATCGGATCGAGGAGCACCTCAGCGGTACGGAGCGTCGGGCCTTCCGGTACGGCGCCCGTTTCGGGGCGGCCGAGGTCTCCGGATACCTCGGGCGAGTGCATGATGTCGGGAAAGGGACCTGTGCCTGGCAGAAGAGGCTTCTGCAGGTAGAAGGCACGAAAAAGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGTCCTTCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 24 5998294-5999929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDB010000001.1 Nocardiopsis composta strain DSM 44551 Ga0415200_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5998294 37 100.0 37 ..................................... TGCGGTTGGGGCCCGGTGGTACCAGGGGGCTGCCGCC 5998368 37 100.0 36 ..................................... ATCGCGAAGACGGCCGGCGCGCTCGGTGTGGATCCG 5998441 37 100.0 35 ..................................... TTGCCGACGTTGACCTGGTCGTGGGTGACCCGGGG 5998513 37 100.0 36 ..................................... CCGGAGGCCAGGCAACCAGAGTTGACGGGCTTGGGC 5998586 37 100.0 35 ..................................... CTGGGTTCCGGGCCACCATGCGAGCAGGCGCGGAG 5998658 37 100.0 35 ..................................... CTCTCAGACGGTTTTCCGGTGTCTCGGCCCGCCGG 5998730 37 100.0 36 ..................................... CAGGCATGCACCACCGCCTCGGCGGACTTGCCGATG 5998803 37 100.0 36 ..................................... GGCCTGGTGCTGGCGATGCTCCAGGAGGGCGAAGCC 5998876 37 100.0 36 ..................................... CTCTGCCGGGTCCAGCAACGGGGTGGGGTCGTAGAC 5998949 37 100.0 36 ..................................... GTTTCGTTGATCAGGTCGCGCATCGCCTGCGGGGTG 5999022 37 100.0 36 ..................................... TCCTTCCTGGTCAGTGATCGGCCGCGTCGGCGAGGG 5999095 37 100.0 36 ..................................... GTAGGAACCGGAAGAAGGAGGCCAGCTTGCCCGAAG 5999168 37 100.0 36 ..................................... ACGCTGTACACGTAGGTCTCCCCCAACGCCGGAGGC 5999241 37 100.0 36 ..................................... GCATCTGCCGCGCACCGGTCGTCCAGGTCCCGAATC 5999314 37 100.0 36 ..................................... CAGGATCTCCCGGGAGTACTGCCAGTAGCCGGCCAT 5999387 37 100.0 35 ..................................... ACCGTGAACGAGGCCGAGAGCACCGACGACTTCCA 5999459 37 100.0 35 ..................................... CCGTACTCGATGGAGGAGTTCGCGGCGGCCGCCGG 5999531 37 100.0 36 ..................................... CCCCGCCCTCCCCCGAGCAGGGCCAGGACGGCGGCA 5999604 37 100.0 35 ..................................... GACTCCTGGGCGTCGACGTTCGGCGAGGTCATCAC 5999676 37 97.3 34 ...............T..................... GCCTCCTCGCGGGCGGCGGTGGCGGCGCGGCGCT 5999747 37 100.0 36 ..................................... TTGGAACTTCGGTGAGGAACGCGCCTCCGACCTGTC 5999820 37 94.6 36 ............G.....A.................. ACCATTAAGAATGGCCCGCGGAAGGGTATGGACGTC 5999893 37 91.9 0 .............CC........T............. | ========== ====== ====== ====== ===================================== ===================================== ================== 23 37 99.3 36 GTGGCAGCCGTCCTTCGGGGCGGCTGAGGATCGCAAC # Left flank : CTGCCCTCGGTCCAGGCCCGCCTGATGGCCCGCCACCTGCGCAAGGACCTGCCCGGCTATCTGCCTTGGACGGTGTGAATGGAACTGCTGGTCACCTACGACGTGTCCACGACCACCCCGGAGGGCGCCCAGCGGCTGCGGCGGGTGGCCAAGCTGTGCGAGGGCTATGGGCTGCGGGTGCAGAAGTCGGTGTTCGAGGTGGTGTGCACTGATGCGGACCTGGTGCGGTTGAACGACGCGCTGCACCGGATCATCGATGACACCGAGGACAGCATCCGCATCTACCGGATGAACCGGGGTTCGTTCAAGGCGGTAGAGGTGTTGGGGGCGGCCCGCCGGCTGCCGCACGACGGGGCGCTGGTGCTGTAGTTGGGAACCTGGAGTGGACATGGATTCCCGGGGAGGTTCCCAAGCATGTTTGGTGGGTTTTCAGGGGTTATGTCTGTTTCGGGTTGGGGGTTCGGCGCCGTTCAGCAGGGTGTTCGGGCTGTTCGGGGGCC # Right flank : CTGCATACCCGACACGAAACACATCTTGCCGTCGAACACGATCGCTTACCCGGCCGACGGCGTCCGAGCATGGCTGAAGGGGCGAAGGTTCGCCCTTCACGGGTGCCCGACGTATTGATGACGTCACGCGGAAGGTTCTCGGGAGCGGCGCCGCGCAGCCTGTACTGGCCGACCAACTGAGGGGTTCGAGGGCAACTCTATACATCGGTATGTCGAGGGTGGAATGGCTGAGTGCGTCGCTATGATTCTGGCATGAAGGTCATCTACAAGATCACCTATCCCAACGGGAAGATCTACATCGGATCTGACCGCACCGACAGCCGACTGACCTACTTCGGAAGCCCGTCGAAGGAGGTCTTGGAACGCGACTTCGACCGTGTCGACCTTCAGGACTTCTGGGTGCGCAAGCAGATCCTCTGGCAGTCCGAGACCGCCACGACCAGTGAAGTTCTCCGGTGGGAGAACGAACTCATCATCGAACACGGCGCGAACGACCCTGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGTCCTTCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //