Array 1 13097-11296 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBM01000039.1 Salmonella enterica subsp. enterica serovar Poona strain PTVS001 NODE_39_length_33979_cov_39.0687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13096 29 100.0 32 ............................. AAATTGCTCGAAATTGTCGCCTATTGGGAAAT 13035 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 12974 29 100.0 32 ............................. TCGGCAGCTACTTCGGTGTTAGGCGGCATCCA 12913 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 12852 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 12791 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 12730 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 12669 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 12608 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 12547 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 12485 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 12424 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 12363 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 12302 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 12241 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 12180 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 12119 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 12058 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 11997 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 11936 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 11875 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 11814 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 11753 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 11692 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 11631 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 11569 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 11508 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 11447 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 11386 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 11325 29 96.6 0 ............T................ | A [11298] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGCCAGGATATTTGGTCTTATCAGCAGCAGGCGGCGTTGGAATGGCTGGTGCGCCAGGGGGAGCAAAATGGCTTTACCCTACGCGAGGCGAGCGTTGATGCTTACCGGCAGCAGCAGATACGTCGCGAGAAATCCCGGCAGATGATTCAGTTTAGCAGCGTGGACTATACCGGCGTGCTGGTGATTAACGATCCCGCGCTTTTCCTGCAACGTCTGGCGCAGGGGTACGGTAAAAGCCGGGCGTTTGGCTGCGGAATGATGATGATCAAACCCGGAGATAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28418-28146 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBM01000039.1 Salmonella enterica subsp. enterica serovar Poona strain PTVS001 NODE_39_length_33979_cov_39.0687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28417 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 28356 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 28295 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 28234 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 28173 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //