Array 1 642366-641388 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881183.1 Thermococcus camini strain IRI35c chromosome TIRI35C Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 642365 30 100.0 36 .............................. ATAATCGAAGTCAAACGCCTGGCTGTAGACGAGGTT 642299 30 100.0 37 .............................. AAGCTGTGGGGTCGACAGAATAGACGACGTTCAAGCG 642232 30 100.0 35 .............................. AGAGACGTTCTGGAAGAACTTGACAAGGCAAGAAA 642167 30 100.0 40 .............................. CAGTTATGGATGAGCTTGCGCTTAATAAGTCGAAATTCAT 642097 30 100.0 36 .............................. AGTGATTATCGCGAGTTCTACCGCGTCGAAGTACCG 642031 30 100.0 39 .............................. TCACTCCAGTCGAAGCAACCACCCCGCCAGTCACCATAG 641962 30 100.0 40 .............................. ACGTAAGAAAGCGCGGAAGTTCCCTCCAGTTCATTTTGAA 641892 30 100.0 38 .............................. CCACCTCACAGGGTCTTGGGAACGCGATATTCAATACT 641824 30 100.0 36 .............................. AAGACCTCCTCGACGTGCTCCATGCCTATCACTCCT 641758 30 100.0 38 .............................. TGGAAAATCCTCAAGCAAAATCGGCAAAACGCGTGGGA 641690 30 100.0 37 .............................. GAATACTCAACTCCGGGTCGCTGACGCTGAAGACCCA 641623 30 100.0 40 .............................. GAGCAAAAAGAAGGCACGAGAAGGCTTTTTTAGTGTACAA 641553 30 100.0 37 .............................. CACTCCTCGGACCCCAACTTTGGGAAATCAAGAGGGG 641486 30 100.0 40 .............................. TCGATATAAAAGTGTTTGACGCGGGCCGGCCTCTCGACAT 641416 29 76.7 0 ...............C..-...C..CT.GA | ========== ====== ====== ====== ============================== ======================================== ================== 15 30 98.4 38 GTTGCAATAAGACTCTAGGAGAATTGAAAC # Left flank : AAATTAGAGCACGGAAATTTAACGGTTTCGGCTCTATCACGTTCATACCCTTTTGATTGGACTTATAGTACCTATCCTCCCTTTCAATCCAAAAAACCGCCCCCCAATAGCCCGGGAAATCGATTTTTGGCCTTTTTATGTTGTTACGTCCTGTTTTATATTCTTTGTACTATTGTAACGAAATTTTTTCGAAGTTCTCAACGCTCCTGTCACCCAGCCTGGTTTACCCGGAATCCTGTTAAGAATACCCCCTCCAGGTTTTAGTCTGCTTTCAGACCTTTTTTCTGGTTTTAAAGGCTTTTTAAGTCCCGGGAAATCTTTTGTACTTTTTTGTTCATTGTGTTTTCGGGACTTTCTCGTGAGCTTTTTTGTTATGTTTTCCAATTAGAAGCCTAAAATTCGGGCTTTTCCGGAGCTTCTTTTTCAGCGGTTTCCAGAAAAGTTTAAATATTGAGGGGTTCTTAGGACTACACAGGCAAAACGGGGCAAAATCCCCGCCT # Right flank : GGTTTCTCGTGCGTTTAAGTTCGAGGAGTATGGGGACAGAACGTCCCCCGGACAATAAGCTTCCGGAGAATTGAAAATAAAGGATCAGAAGCTACTCCCTCTGCGCAAGCTCCATCTCAAAGACCCTCTCGAAAACAGCCCTGTGGTTTCCGAAGGCCTCGAACATTCTGCCGGAGTAGTTCTCGGAGGCGGTTTCGAGGAACAGCCGCAGGTTTCTGCTTATCTCGTCGCTCATTGGGACGTGGAGGGGCGAAGGCTCGTAGTAGTCGAGGCCTTTCATGAGGGCCGTTGAGAAGTACCAGAGCGTTTTCCTGACCTTCCTGCCCTTTATCGTGGAGAAGCTTGCCTCCATGCAGTTGAAAGCCGCGTGAAGGAGGACTATCATGTCGATCTCGACGCCGCGCTCCAGGAGCCTCTTCCTGCCGGCGTCCTTTCTGAGGTCCGTTATCCTGTAACCGCTTCTCGTCTGCTCATCGTAGGGCACCTCAATGCCGTAGATG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 1213554-1214721 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881183.1 Thermococcus camini strain IRI35c chromosome TIRI35C Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1213554 29 100.0 38 ............................. TGGTGATGGGATGCAAAACCTCTTTCAGTTGAGGCTAT 1213621 29 100.0 38 ............................. CAGTTAGAGTTGTCCTGCTGTATGACGAGAGGGAGTTT 1213688 29 100.0 38 ............................. ACCCGTTTGTCAAGAGCTACCAGCTCATCGAGAAGACC 1213755 29 100.0 39 ............................. TCTCATCATACTTCTTCCTCAAGTCATCTCCATTGAGGA 1213823 29 100.0 40 ............................. AGGAGGTACTTGGGGCTGGGCGAGCGTTAGGAAAGGGGAA 1213892 29 100.0 37 ............................. TTTATATGCTTAAGTTCACCTTCCATTGAGGATCACC 1213958 29 100.0 37 ............................. CTCTATATACAATACTTCTGGTTCTGGCTCATACTCA 1214024 29 100.0 38 ............................. CTTGTGAGCATTCTGTTGACCTGGAATGGTGTAAGCAA 1214091 29 100.0 40 ............................. AACCGAGAACGGGAGCGGCTCGACAGTGTAGGTTACCTGC 1214160 29 100.0 38 ............................. CCTCGTCTTCGGCGGCACGGTACACGAGGAGCGCAATC 1214227 29 100.0 38 ............................. CCTCGTCTTCGGCGGCACGGTACACGAGGAGCGCAATC 1214294 29 100.0 37 ............................. TAAAGCTTTCGGTTGGCGGAAGAACGAGAAAGTGGGC 1214360 29 100.0 35 ............................. GTGAATGCTTTGGAGTGTTATTTTGAGGATGCTTT 1214424 29 100.0 40 ............................. ATGCTAAGCCGGCTGAGAATATTAGGAATGCTATGAAGAG 1214493 29 100.0 37 ............................. TTCATGACATACCCAACAATCTCTACCAGCCCATCGC 1214559 29 100.0 38 ............................. ATTGCCAGGAGATCAAGGATGTCTAAAGTTATCAGCTT 1214626 29 100.0 37 ............................. CTGCAACGCTCACGGTTGAGACGGCTAATCAGAACTA 1214692 29 86.2 0 ...............C.......TC...T | C [1214715] ========== ====== ====== ====== ============================= ======================================== ================== 18 29 99.2 38 GTTTCCGTAGAACGGTATCGTGTGGAAAC # Left flank : TGTAGCACCTGAATGGAGTGAAAATGGGTGGGGGACTCAGATAACCAGCACACCTTTGGTCTGGCTGGAATCCATGGCTACATGGATTTTCAAGCTGTATTCTGGATTTAACGTGCTCATGACCCGGTTCTCGCCCCGATTACTCTACCAGTGGTAATTTTTCTCCAGATGTGCACATCTGGAAAAGAGGCTTTAACCCCGGCTAAAACCTGAAACGCAGCATTTGGAAGGCTGTTTGAGTGGTAGCGGACACCTAAGAACAGTCAATAGCCCGTTTTTTCGGTGGTAAGATTAGCAAACCCCAGGAGAGACGTTTCGATTCCTCCAATAGGGCTACCGGCCCATGACAAGGGACAATACCTCCGAAAAGACCCGCGGGAAGCATAGGATATCTCTGGTCATCTTTATAAACGGACTGCAGTGACACGGGTTTCGGGAAAAAGCTTTAAATACATGCTCTGAGAGGTTATTATTTGAAGAACAGGAGGAATAAGTCCAGA # Right flank : TAAGTGGTAAAGCAACGCTCCGGGAGGTTTTCCCTTGAAGAAGCCCTATTACATCACCCAGATGGGGATCCTTGAGAGGAGGGGTAACACGCTGTTCTTCGAGAACGAGAACCTGAAAAGGGCAATACCAGTAAACTCCACCAGTGAAATCCACTGCTTCAAGCCGGTGACGCTGACAAGCGGGGCCATAAAAATACTCTCAGAAAAGAACGTCCCGGTTCATTTCTACAACAAGCACGGCTACTACCGCGGCTCCTATATGCCTGTAGAAGGGCAGGTGAGTGGAACGGTGGTAATAAAGCAGGCCGAGCACTACCTCGACCCGGAGAAGAGGTTATATGTGGCGAAACAGTTCGTGGAAGGAATAAAGGCCTCGATGGTTGCCCTCCTCAAGGCCCACAAGGCTAACTACAAGGTGATTTCAGAGGTTGAGATTGAAGGCAATAGTCCGGCCGAGCTGATGGGCCTTGAAAGCCAGCTCTGGAAGGAGTTCTATGGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGGTATCGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 1433209-1431532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881183.1 Thermococcus camini strain IRI35c chromosome TIRI35C Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 1433208 30 100.0 40 .............................. GACCCCACATGTTAATCACCATCCACGTACTCATCTACGA 1433138 30 100.0 36 .............................. CGGTGGGCTTGTGGTCAGCTACCGCAAATACAAGAA 1433072 30 100.0 37 .............................. TGAAGAAAACAAGCAGCTCAAGCAGGAGATTGCAGAG 1433005 30 100.0 37 .............................. TGTGGTGGTCGCGCTGGACGCGTATAAGGTCAAGCTC 1432938 30 100.0 37 .............................. AACGTTATATTGACATCGCCCTGTTCTGTTATCGTCA 1432871 30 100.0 37 .............................. GGACTTGCCTAACAATCCCTCGGGGTCAATTTCTATT 1432804 30 100.0 38 .............................. AATACATGATAAAGTATGCGTCATTGTAGTCGCCATCC 1432736 30 100.0 40 .............................. ATGAGTGTTAATAAACTCAAATCGGGTGGGTCTTCTTCAA 1432666 30 100.0 38 .............................. AAGAGCCCGGCACAGCAGGTAGTCAGAAACAACTTCAA 1432598 30 100.0 37 .............................. GAGGGGACCACTCCTCGGCAAGATTGGGGACTTCGCC 1432531 30 100.0 36 .............................. GAACAGGGGTTTCTTCTTTGTCTGGTGCCCAGAGTA 1432465 30 100.0 40 .............................. AGAGTAGATGCGATACAACCTCCACCCACCACTATGCCAA 1432395 30 100.0 43 .............................. ATCTGGACTTTCACCCTCTGCTTCTTCTTTTTCCTCCTAAACC 1432322 30 100.0 36 .............................. GACTTTTGGGAACTTCTCAAAGCCCTCTTGGACAGC 1432256 30 100.0 38 .............................. GCCAGTTTCTTGTAAGGTCTATCCAACTTTGGTACTAC 1432188 30 100.0 38 .............................. GGTTACCAGGGACCTCATCGAGGAGCTTTTCGATGCAA 1432120 30 100.0 41 .............................. CCTTCTCTGTGAACAGCAGTTCAAGAACAGGCGTTTCATAG 1432049 30 100.0 38 .............................. CTGAAGCTCATAGAGTGGATAATGAGCTACTGGAGCTT 1431981 30 100.0 37 .............................. TTGACACAAGGCCCAAGGCGATTCCAACATTGATACC 1431914 30 100.0 38 .............................. GCGGGAAGTGGGACTCTGACACAGGCACCTGTTATGTC 1431846 30 100.0 40 .............................. CAAATTTCCGTTCTCGCAAATATCTACATGGTCATGACGG 1431776 30 100.0 36 .............................. CATTAGGACGCCGTCAAGGTTTGGAGCGCCAAACCT 1431710 30 100.0 41 .............................. TCGATGACGTAGACGAGGTTTCGTTTCCCGATCATCATCGG 1431639 30 83.3 48 .........................CTGGA GGTTTCTCATGCGTTTAAGTTCGAGGGGTATGGGGACGGAGCGTCCCC 1431561 30 73.3 0 CGGA............T....G...A...G | ========== ====== ====== ====== ============================== ================================================ ================== 25 30 98.3 39 GTTGCAATAAGACTCCAGGAGAATTGAAAC # Left flank : GCTGAGGGAGCTGGGATTTGACGTTTTCATGGGGCCATCACGATGAGCATGCTTTCTTGGCGATTTTTGGTCGTGTAGACAGGGTTCTCTTGAAATAAAGCCCCAGCAGACGTCTGGAAATCGATTTTCGCTTTTTCATGGTTGCCACTTTTTGTTATATTTTTGTGTCAAAATATGACGAAATTTTTTCTGAATGTGGAATTGCGGCAGGACCAAGCCCCTCTGGGTTTGATCCCTGGCGAAACCCCTTCTTTTTCTTTTCGAGACCGGATGGACACTACTCTTGAGTTTTAAGCGCATCTAACGGCCCTGGAAATTACGTGTACATTTCTGTCCACCAACTTCCCGGAGTGCGGCCATGGGATTTTTCCCGGCGTCGCCCGTGCGGTGCCCCCCGATTCAAGCCCTATCCGGGTGTCTTTTCCAGTGGTTTCCAGAAAAGCTTAAATATTGGGAGCGTTTTAGGACTTTACTGGGCGAACGGACGAAAATTCTCTCCT # Right flank : GAAAGATCAAGATTTGCTGCTCACAGGAACTCCCCGAAGAGCAGGTCCTCCTTTTTCCCTCCTGCTTTCCTAAAGACCTTTTCGCTCCAGGAGACGCTCCCAACGGCGGGGGGATAATGGGCATCGCTCGCGAAGGTGAGCTTTATCCCGCGCCTTATGCACTCACGGATGAAGTCGATGTCCGGTACTCTGTAGCGGGAGCTTATCTCAAAGGCCTTTCCGTTCTTCTCCGCCAGCTCGAGTATTTCCTCCAGTCCGTCGGCAGACGGGAAGCCTATGTAGGGGAAGCTGGCCCCGAAGTGGCCGATGACGTCAACGTTGTCGTCTTCGAGGGCGAGCTTCACCAGCTCCACGTATTCCTCCGGCCTCTCGAGCCACTCGTGGACGCTCGCTATCACGTAGTCAAGCTTCTCCGCCATAAAGTCCGGGACATCGACACCCCCGGCCGTTATGTTGCCCTCCACCCCGGCCAGAATCGTCAGCCCCGCGTCCTCGCCCCA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCCAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 1563168-1560811 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881183.1 Thermococcus camini strain IRI35c chromosome TIRI35C Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 1563167 30 100.0 41 .............................. GACGAAGACAACCCAATCGTTCGTGCCGTCGCCAGTCACGT 1563096 30 100.0 37 .............................. AAGCCAGCGCGGGATGACGTACCTATATGACCCCCTG 1563029 30 100.0 36 .............................. GTACAAGACATACCAGGATTTCGTCATAAAGACAGG 1562963 30 100.0 37 .............................. CGCTAAATCTAAAGAGATGACGCTTAAGGAGTTCATC 1562896 30 100.0 37 .............................. TTGAGGTCTTTGGCCGGCTCATTCGAAACGAAGTTCT 1562829 30 100.0 45 .............................. GTTTGGGAACGAGGAGGAGGTCTACAGCGGCAACGTCTTCGGAAA 1562754 30 100.0 37 .............................. CCGTCCTAACGAAACCCGGACACTATACCTTTATTAT 1562687 30 100.0 38 .............................. ACCGCCGCCGCGGGGCTTTTCATATGCAACCGGCCACA 1562619 30 100.0 40 .............................. GCGCCCACTCGTCAGGGTTGTCGGTGTACGGCGCCATGAA 1562549 30 100.0 43 .............................. TAGGTCGAAACTCTCTTCCTCCGGCTCCGGGTACGCCCACCAG 1562476 30 100.0 42 .............................. TTGGGACAGTTTGGGACACCGGGACATTTGGGACATTTGTCC 1562404 30 100.0 37 .............................. TGTGCTCTGCCCGTGGTCAAGGCGGGGCCCCACCCCC 1562337 30 100.0 37 .............................. CGCCATAACTCAAAGCCTCGGCAACTCTCTTGAGTGA 1562270 30 100.0 38 .............................. TAACAAGAACAAGACAGTCCTGCTTAAGCCTGGACAGG 1562202 30 100.0 36 .............................. GCCCACTATGCCGATGTGGGTCGCTCCCCTGACGAG 1562136 30 100.0 38 .............................. ACGGTAAAAAGGGCGGTGGGAAGATGGGAAGCGGTGAG 1562068 30 100.0 36 .............................. CGAAGGATCTGCTGAAGGAGAAAGTTTTCGGAATCC 1562002 30 100.0 39 .............................. CAAGCAAAAGCGAGCAGAGCTACATCGAGAAGGCGAAGA 1561933 30 100.0 37 .............................. TATTGTAGTGTTATACGATGATTATAATCGGATTAGG 1561866 30 100.0 37 .............................. TCAGCATTTCTGATTCAAGCGGTTTCAGCCTCTTTGG 1561799 30 100.0 37 .............................. CTGATGTGGCTGATTTTATCCAGGGCCGCGCGAGCGA 1561732 30 100.0 36 .............................. TAGGGGCGGAAAGTTCGGGAAGGCGAAAGACATAGC 1561666 30 100.0 39 .............................. CGCGCAGAACCCTCACGAGCAACGACGCAGATATCTTGT 1561597 30 100.0 41 .............................. AGCATTAGTACGACAAAAGCGAAAATTCCGAGCCCGAACGC 1561526 30 100.0 36 .............................. GAATTGGTCAGGGTCTTAACCTCGACAGTCATCTTA 1561460 30 100.0 40 .............................. TGTTCCTCGGACAATATAAAGGAGGTCGGCATAGATGAAC 1561390 30 100.0 37 .............................. GGAGGATGGCGCCCATGGCATACGCATTCTCAGCACG 1561323 30 100.0 36 .............................. GTGTATTCTATTGTGGGGGGGTCGGTGCTTATGACT 1561257 30 100.0 39 .............................. GCGCTCTTCGGTGGTGTCGATAGCTCCAACTATGCCCAG 1561188 30 100.0 37 .............................. CTGTGGCCTGGAAGCGCCAGCGTGACTATTGCCTCGT 1561121 30 100.0 36 .............................. ATGTGGTTGACTTCGAAGGCGCTGGCGTGGATGAGT 1561055 30 100.0 40 .............................. GCACGTCCCCTCTGAAGACAGGAGGGATACTGTGATATAC 1560985 30 100.0 37 .............................. TTATGACTTTCCAAGGAGCCTCACCAGAGTATATTCT 1560918 30 83.3 48 .........................TTGGG GTTTCTCATGCGTTTAAGTCCGAGGGGGTGTGGGGGACGGAACGTCCC 1560840 30 86.7 0 CCC........G.................. | ========== ====== ====== ====== ============================== ================================================ ================== 35 30 99.1 38 GTTGCAATAAGACTCTAGGAGAATTGAAAC # Left flank : GCCGAGGACGAAGGACGGCGTCCCGATAGAGTAGCATCACGATGGGAGCCCTTAACTTCTGCTTTTGTTGTTTTTTAGATTTGTTCTGGACAATTGAAGCCTTAATTTTGCCCGGGAAATCGATTTTCGCTCTTTCATTATTATCACTTTTTGTTCCATTTTCTCGGATATTATGTAACGAAATTTTTTCGAAGTTTGGAATATGGCCGTGGTCTGGCTCCTTTCAGTTTAAACCCTATCAAAACTGTTTCTTCCTGACTTTAGCTGGCTTACAGGCCATTTTTCGGGTTTTAAAGGTCTTCTAAGTCCAGGGAAATCCCGTGAGCACCTGTGTTCATCAAGTTTTTTGGGCCCTGTAGTCTTGGCTTGGGTCCCTTAAAGCGTTCCAGGGGTTCTGTTTTGGACGCCCTGATAGCTTCTTTTACAGCGGTTTCCAGAAAAGCTTAAATATTGGAAGTGTTTTAGGGCTTTATTGAGCAAATGGGAGGAAATTCCCGCCT # Right flank : TGTTACGACGATTGGCGATGTTGAGAAGTTTCTGACAGCAGTTCTTGTCTTGATTGCGTTAGGGTTTTATAATCTGCTGTAGAGATTAAGACGGGGGAGCTTATGGCGTCCGATGTGAGAGCCATTGAGATTATGCTGAAAACCGATGAGAACGCCAGGCGTTCTATTAGTGCGTGGATTGTTCAGATTGCTAAAAAGATTCACGAGAAGCCAGAGGATGTAGTGTGGTTTTTTGAGATGAGACAGCTCATGGACGAGGTTGAAAGGCTTGCAGAGACTACCACTGATGAGGAACTCGAGGAGTGGGAGAGGGAACTGGAAGCAGAACAGAGTGGGATAGACCGCCCCCTTGAGGAGCTTTTAGAGATGGGTAGAAGGAGCTTTAAGAAATTTAAGAGGATAGAAGTGAAGCTAAGGGAACTTGGGGTCGTTTAGCATGGCACAGAGGATTAAGGTTGTTCTGGATACTTCAGTCCTCATAAGCGCACTGAAGTCCAAGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //