Array 1 5128-737 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJQY01000467.1 Streptococcus sp. GMD1S Contig_467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5127 36 100.0 30 .................................... CCATTGTTGAGGACGAAGTGTTCAATCAAG 5061 36 100.0 30 .................................... TTCCACAACTGAGTAACCGATAAAAAAGCA 4995 36 100.0 30 .................................... AGTTCTTGACTGTGATATTTGCTCCTGAAC 4929 36 100.0 30 .................................... CTCGTTCCCATTAGATGTTTCAAACACCTT 4863 36 100.0 30 .................................... AACATTGATATTTCAACCTTTCTAAGCATT 4797 36 100.0 30 .................................... ATCACCCCTTTCATGGTGTAAAATAGGGTA 4731 36 100.0 30 .................................... CGCCCGCTGGGAAGAAGACCCACGCATCAT 4665 36 100.0 30 .................................... CCCAGTCATAATTATCCCAACCAAAAACTC 4599 36 100.0 30 .................................... CATTATCAAATAATCTTAGTCAGATTGAAC 4533 36 100.0 30 .................................... AACTTCGTGCTAAAGGTTACATCAAGGGTA 4467 36 100.0 30 .................................... CTGTTTCAGACGATGGAGATATTTCAACAG 4401 36 100.0 30 .................................... TTCTATTTCTATAATCATTATAACACAATT 4335 36 100.0 30 .................................... TAACAGGTTTACTTGATGGATTGGCGCTGG 4269 36 100.0 30 .................................... AAAGCCCCATCTTTACTCACCTCCTTTCTA 4203 36 100.0 29 .................................... AGAGTATCATACGAGCCTTGGGATCAAAA 4138 36 100.0 30 .................................... TAGCCCGTCACTTTATTATATCAAACGCAC 4072 36 100.0 30 .................................... CTTTTGCTAGCTTGTACGATATTTCACTAA 4006 36 100.0 30 .................................... CCATCATCAGAATAAGTAAAATCCTGAAAG 3940 36 100.0 29 .................................... ACTGAAAAAGCTGTCAAGCTTACTGCTCC 3875 36 100.0 30 .................................... GATAAGCTCATCCACATTGTTAAAACTTCC 3809 36 100.0 30 .................................... CTAAAGCATGGTACGGGGATAAGTTTTCTG 3743 36 100.0 30 .................................... AACGCATTAGATTTCTGGAAGATGAACTGT 3677 36 100.0 30 .................................... CATATTCCTATCATTTAGAAGTTAAACGTA 3611 36 100.0 30 .................................... GAGAACATCGTGGAGGAAGGAGAATAACAT 3545 36 100.0 30 .................................... TTAAGGGCGCTGGTATGACACCAGAGATAA 3479 36 100.0 30 .................................... AATGTGTCAACTCATTCACAAGCGGGATAC 3413 36 100.0 30 .................................... TGAAGGATGATGGCAAATGGTACTACCTAA 3347 36 100.0 30 .................................... GGTTTTTAAATTGTACTTTTCCATAAAGAC 3281 36 100.0 31 .................................... AAGCGATATAGATAATGCTGAGCAGATCAGG 3214 36 100.0 30 .................................... TTTTGGTAAAAAGCACTCTGAAGAAACAAA 3148 36 100.0 30 .................................... CTTTCCTATAATGTAAACCAACATTTAGGC 3082 36 100.0 30 .................................... ACCCTGACGGGTCTTATCCAAAAGAAGAAT 3016 36 100.0 30 .................................... AAATCAGCAGTCTAACAATTAAGTTTCTTA 2950 36 100.0 30 .................................... TGTTTCCATAAAATTCTCTTTGTTCTGGCC 2884 36 100.0 30 .................................... TACAACAAGACAAAGGACGTAGGGACATTG 2818 36 100.0 30 .................................... TAACACGAGAGTTAAATAATTGCTTTGGTT 2752 36 100.0 30 .................................... TGGTGACACTACAATCAGCAGATGGGTCAC 2686 36 100.0 30 .................................... GTCCTTGTGAAACAGCTCCATCAGCAGCTT 2620 36 100.0 30 .................................... ATAAAACCGTTACAATTCCATCTGCAATAA 2554 36 100.0 30 .................................... ATCGATGAAAGACTGGCTCAGCTTGCGTCT 2488 36 100.0 30 .................................... ATGACCGTTTTAATTGGGCGATGGACATTG 2422 36 100.0 30 .................................... TTGGTCCTCAATTGGCTGAACTGGAAATGC 2356 36 100.0 30 .................................... TAAATCCTGCGAAGCCTATAATCGACCTGC 2290 36 100.0 30 .................................... AGCCATGTTATTCATGCCATCCAAAGCCGA 2224 36 100.0 30 .................................... TTATCCATGATACTGAAGCGTTCCATCACG 2158 36 100.0 30 .................................... GCCACCACATCTATAAAAGATTTCGTTCCT 2092 36 100.0 30 .................................... GTAATTTTGTAAGTTTCTTATCCGGTCTTT 2026 36 100.0 30 .................................... ATCTTCGATTGTTCTCATTGCTCCATAAAC 1960 36 100.0 30 .................................... TTCAGAGCGACCGGACGGGTTGTATGGTCA 1894 36 100.0 30 .................................... AAATTAAGTTAGAGATAGGCAATGTACCTA 1828 36 100.0 30 .................................... CGGTCATACGTGAAGCATTGCCAAGATTGA 1762 36 100.0 30 .................................... CTTTCAAAATTCCTAGGTTCTTCTCATACG 1696 36 100.0 30 .................................... CAGGCGCCTATTACACTCATAACCATCAAG 1630 36 100.0 30 .................................... TCCTTTCTTCTAAATTTGCTTTTTACATTT 1564 36 100.0 30 .................................... AGAAAATTGGAAATTTAGATAAATTTTATG 1498 36 100.0 30 .................................... TAGACCTCAACCAATCGCTGATTGAGACGC 1432 36 100.0 30 .................................... CCTGTACCATGGTTATCCGTCGGATGATGT 1366 36 100.0 30 .................................... AGTTGCTGATGTGTTTTTCATATCCAGCCA 1300 36 100.0 30 .................................... TAAATCTAAAAATTAGAAAAACCACCAAGC 1234 36 100.0 30 .................................... TAAAATATCGAGAAACCTGGTATTTCATGG 1168 36 100.0 30 .................................... AAGATAGCCACAATAGCATCCCAAATGCTT 1102 36 100.0 30 .................................... AGGTGATACAACAGGAATCTGAGGCGCTGG 1036 36 100.0 30 .................................... TCAAAAGAGAGTCGCTCTTGGTACCAAGTA 970 36 100.0 30 .................................... TTATGTGGCAAGCGCTAACTACTACAGATA 904 36 100.0 30 .................................... CCGTGAAATTAGTAGTGTTCAAAGGTGCTA 838 36 100.0 30 .................................... ATGCTTGTATTCGCTTTATGGAAATCCTCA 772 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 67 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAATATGAAATGAAAAAAAAATTCTGTATTGGATCAATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : ACCTCATGCTTGAAGATGGCCGATTGGCTGAAAAAGAAAGTTTCAACATCGGGCCTGACGGATTGATCACTACAAAATAATTTTTTAAAAATAGAAAGGAAATTTTCTAAAATATTGTTCGAATTGTAACCGCAGGCTCAGGCTTGCGGGCTTTCTTGTTTGCAATAATAAAAGCAGTGACGGAAATCACTGCTTATCAGCTGTAGCAAATTCATAAAGTTTTTCTGCTGTGAGAAGTGCCATTTTGTCCATGCTTGTTTTTCCTTTTCTGAGGTCAGAAACGGTAGTCCATGGCACACCGGCACCTTGTGAAATAGCAGATGTAGAAATAGAACTATTAAGTAATTCTTGAATAACTTTTCTCATATTTTTCTTTACCTCAATTTTTATCTTAATCATATTATATAACGGAGAACCGAGATGTCAAGCGTTTTGATAAATTATTTCTAAATATTTTCGCCCCAAACTTGCCCCCAAAAACTTATTTTTTTATATTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1846-347 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJQY01000328.1 Streptococcus sp. GMD1S Contig_328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 1845 28 100.0 33 ............................ TACCACTGCTCTTGCGATATTCTTTGCCAATCT 1784 28 96.4 33 ............T............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 1723 28 96.4 33 A........................... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 1662 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 1601 28 96.4 33 ....................A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 1540 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 1479 28 92.9 33 A....................A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 1418 28 96.4 33 ..........................T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 1357 28 89.3 33 ............T.T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 1296 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 1235 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 1174 28 92.9 33 ..............T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 1113 28 100.0 33 ............................ CATGATTATGACTATCAATGACCATGAGGGTGA 1052 28 96.4 33 ............T............... TACGCAAGACGTTTCAAGTGCTGCAATCCTTAC 991 28 100.0 33 ............................ TGATAGAAGCCGATTGGGTTTGACTGCTCCACT 930 28 96.4 33 ............G............... TTAAGTTCACTTCTTAAAAAAGATGAAGAATTG 869 28 100.0 33 ............................ CAGTATTTTTAGCAACTTTAGCTTATCAATGGA 808 28 96.4 37 .....................A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 743 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 682 28 96.4 33 ............G............... TGTAGACACATCCACAAGCTGGACAATCCCTCT 621 28 96.4 33 ............G............... TACAGATGCTTGTATTCGCTTTATGGAAGTTAT 560 28 92.9 33 ............G.A............. CTGATTATCTAGCCCCATCTCATAGATGGCCCA 499 28 100.0 33 ............................ TCCACCAATTTTTCCTTTGTAGCCATCAAGCAA 438 28 92.9 33 ............G........A...... TATCCACGTTTACTCTATCCTTAAACAAGTCAA 377 28 92.9 0 .....................A....A. | C,T,G [350,353,356] ========== ====== ====== ====== ============================ ===================================== ================== 25 28 94.9 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : CATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTTTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAGCTCAGATTATCGTTTCTATCGGTCTCGCCCAAAACTTTGCGGCCCTCAAAGC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //