Array 1 2941785-2939924 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHT01000006.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03891 2015LSAL03891_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2941784 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 2941723 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 2941661 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 2941600 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 2941539 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 2941478 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 2941417 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 2941356 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 2941295 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 2941234 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 2941173 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 2941112 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 2941051 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 2940990 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 2940929 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 2940868 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 2940807 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 2940746 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 2940685 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 2940624 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 2940563 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 2940502 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 2940441 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 2940380 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 2940319 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 2940258 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 2940197 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 2940136 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 2940075 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 2940014 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2939953 29 93.1 0 A...........T................ | A [2939926] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2959246-2958425 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHT01000006.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03891 2015LSAL03891_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2959245 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 2959184 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 2959123 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 2959062 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 2959001 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 2958940 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 2958879 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 2958818 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 2958757 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 2958696 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 2958635 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 2958574 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 2958513 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2958452 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //