Array 1 19783-18427 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHQ01000027.1 Neisseria meningitidis strain M20967 M20967_CHA4080A150_cleaned_ctg_11045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19782 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 19716 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 19650 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 19584 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 19518 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 19452 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 19386 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 19320 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 19254 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 19188 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 19122 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 19056 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 18990 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 18924 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 18858 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 18792 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 18726 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 18660 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 18594 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 18528 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 18462 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //