Array 1 2681441-2680067 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778151.1 Escherichia coli isolate SC476 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2681440 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 2681379 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 2681318 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 2681257 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 2681196 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 2681135 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 2681074 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 2681013 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 2680952 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 2680891 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 2680830 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 2680769 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 2680708 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 2680646 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 2680584 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 2680523 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 2680462 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 2680401 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 2680340 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 2680278 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 2680217 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 2680156 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 2680095 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2708270-2707143 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778151.1 Escherichia coli isolate SC476 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2708269 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 2708208 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 2708147 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 2708086 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 2708025 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 2707964 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 2707903 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 2707842 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 2707781 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 2707720 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 2707659 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 2707598 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 2707537 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 2707476 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 2707415 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 2707354 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 2707293 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 2707232 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2707171 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //