Array 1 481-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARYF01000108.1 Neisseria meningitidis Nm10259 J13601000108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 480 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 414 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 348 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 282 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 216 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 150 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 84 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.6 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TATAAATCAATACCGTGAAACCTCATGTGTGTTGTAGCTCCCATTCTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 39-932 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARYF01000027.1 Neisseria meningitidis Nm10259 J13601000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 105 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 171 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 237 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 303 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 369 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 435 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 501 36 100.0 30 .................................... CTGAAGCTGATGAACGAGCACGTTTTGTGG 567 36 100.0 30 .................................... CGTAGGGATGTGTGTTAAATCTACCGTTTT 633 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 699 36 100.0 30 .................................... CGCGCGCACCGCGCCCAAGTAGCTCAGGGC 765 36 100.0 30 .................................... CACGTTTTGCAGCATCACGACATCGCCCGC 831 36 100.0 30 .................................... AAAACCTTTGACGATGGGACAGGCAATTTA 897 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GCTACAATAAATTATACCAATGGCGAAAATCTCGGGCGG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //