Array 1 249011-250626 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNS01000002.1 Salmonella enterica strain BCW_4927 NODE_2_length_430643_cov_1.80269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 249011 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 249073 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 249134 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 249195 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 249256 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 249317 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 249378 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 249439 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 249500 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 249561 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 249622 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 249683 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 249744 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 249805 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 249866 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 249927 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 249988 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 250049 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 250111 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 250172 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 250233 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 250294 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 250355 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 250416 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 250477 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 250538 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 250599 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 266909-268806 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNS01000002.1 Salmonella enterica strain BCW_4927 NODE_2_length_430643_cov_1.80269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 266909 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 266970 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 267031 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 267092 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 267154 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 267215 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 267276 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 267337 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 267398 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 267459 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 267520 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 267581 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 267642 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 267703 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 267764 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 267825 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 267886 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 267947 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 268008 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 268069 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 268127 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 268188 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 268249 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 268310 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 268371 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 268432 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 268493 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 268554 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 268655 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 268716 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 268777 29 93.1 0 A...........T................ | A [268803] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //