Array 1 48528-47950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48527 29 100.0 32 ............................. GGCCCGCGCAACGCCTTCGCGCTGCTAGACGC 48466 29 93.1 32 ............T..A............. GCCCACAGGGTGGCGATCCTGGAGCACGGCAA 48405 29 93.1 32 ...........................TT GGGCCGACGTGTACGGCGACATCTTGACCGCA 48344 29 96.6 32 ........T.................... GCCTCACTGACCTGGGCGTCGAACACTGGGTC 48283 29 93.1 32 ........T.....T.............. CTCAGCGTGGCCTACAGTGGGGAGCTATTCAA 48222 29 93.1 32 .....T........T.............. TTCGGCAACGTCTGGGCGCTCGCGGCCCGCTT 48161 29 93.1 32 .......T............A........ ACCCCGGTGGCCGGGCCGACGCCGGTGGTGAA 48100 29 100.0 32 ............................. GAGGGGAGGCCGAATGTGGTGGAGTAGTCGAA 48039 29 100.0 32 ............................. GTCGGCCTGCGCATCATCGTCGACAGCGCCGA 47978 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.2 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : AGCCTCGACGACCTGTCCAGCCCCATGCACTTCTCGTACCGCGTCATATCACCGCTGCACGCCGTCGGCCCGTGGAGCGGTGGCACGGCCGAGTTGCTCCTCCACCGAGTGCGAGGCCTGGACTACCGGCCGCCGGGCCTTGTTCCGGGTGCCGCCCTTCCACGTCCGCCCGGCCGCCGCCCCGTCGTCCCTTTCGTCGTCGTGCGCGGTCACGGCCCCGACCCCGCTCACCCCGCCGTCGGTCACCGCGCTGTCTCTCTCGGCTCGGCCGTCTCCTCGTCCGGCTCGGTCGCCGCCCCAGTCCCGGGCCGCGCCGTCGTGCTGCGCGACCCCTGCCTCCGTCGTCCCGTACGTCGACGCCGTCGCGGCGGGGAACTGCTGCTCGAGGCGGGAACGCCCGGGGTGTTGACGCCCGCCTGCGGTACCGTACGTCCGGCGTCCGGGCAGCCCTGTTCCAAAGCCAGTCCCCGCATCCGCGACGCCCGCTGCACCGCCGGCCT # Right flank : CCCCGGCTACGAGATCTGGCTGGCGCCAGCCGCACCCGGCTGGGTGAATCCATCGGGTTGGCGGGACCCTCGCGGGGGTTGCGGTGTGGTGTTGTACGTGCTCCCGGTCAGCGAGATGCACATCAGGGAGCCGGGGCTCGTCGTGGTCGACGTCGCGGCCGCCGACGATGAACCGCCCTCGCTTTCCAGCGGATGCTCGCCGGCCGGTGGGCGACAGTGACAGCGGAGAGCACCACGCGGGACCCCGGACAGCCCGGCGTCCGGCTGCGCTGCTACCTCGACCCGCGCCAGGAACTCACCGCCGGTAGTTGAGGCGGTCACGGTCTGAGACGGTTCATACCGAGGTACCATCCCTCGCCGGACAGCGGTACCTGCGTCACGTCGACGTTGGTGCGGTTGCGGTGCGGGCGGACGGGGTGCCTCCGTCTCCCGGTGCTGTCCCGGGCGATGTCGACGGCCACCTTCATCACCACCTCGGGCTCGACCAGCATCACCTCATC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59174-56968 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================== ================== 59173 29 100.0 33 ............................. CACGATGGTGGCGATCTCGGTGACCGGGCTGAA 59111 29 100.0 32 ............................. CCCGCCTGGATCTGCGCTGGCTCAGGCTGAAG 59050 29 100.0 32 ............................. GTGGGAGCCGCCGCCGGCGGAATCGGCGCGGT 58989 29 96.6 32 ............................T CCCTCCCAACGCCCGAAGACCGGGCCAAGGCC 58928 29 100.0 32 ............................. ATCCGCCGTGACGCCCTCGACCCGAACCACCG 58867 29 100.0 32 ............................. CCCCCGCACACCGCAACCCCAACCACCAAGGA 58806 29 100.0 32 ............................. GACGTGGCCCCGGCCGGTCCGATCTTCATGGA 58745 29 100.0 32 ............................. GCCCCGCTCCCGCTGGTCGTGGACCGCGCTGG 58684 29 100.0 32 ............................. CCCGTGCTCGGGTCCTGCCCCTGCTCGAAGAA 58623 29 100.0 32 ............................. TTCTTGACATCCCAGTCGTTGGATCGGTCATG 58562 29 100.0 32 ............................. CGGTGGCTGGCCATCAGCTTGGCGGACGGCTC 58501 29 100.0 32 ............................. GCAACGAGCCGTCGGTCACTGCGGTCACCAGC 58440 29 100.0 32 ............................. GTCACCAACCCGGACCCCTGCCGCCCGGCCCA 58379 29 100.0 32 ............................. TGGGCGGCACGCCGGCGGAGGACGCGGCGGGC 58318 29 100.0 32 ............................. CAGTCGGCCGCCGGCCTCGCGGCCGTCAACCG 58257 29 100.0 32 ............................. CAGGTCCCGGGCCAGCGGCCGGGCGACGAAGA 58196 29 100.0 32 ............................. GAGCTGATGGGCGGCGGCCTTGTGCAAGGCGG 58135 29 100.0 32 ............................. CATCGAGGTCCAGTCCATCGCAACGCGCCGTG 58074 29 100.0 32 ............................. GACGCCGGCGCTGGAATCCGGTGATCGCGGTA 58013 29 100.0 32 ............................. CGGATCACCGCACTGACCAACCGCGAGGATGC 57952 29 100.0 32 ............................. TGCTTGGTCCCGACCCAGTCCGGTCCGGCCTT 57891 29 100.0 32 ............................. GAACTCCCCAACGGTGGCCTGACGAAGTGGCT 57830 29 100.0 32 ............................. GGGACAGGGTTCGAGCTGGAGGTCAGCCTCCC 57769 29 100.0 32 ............................. TCCGACGGCGTCCACAGCGAGGACACCACCAG 57708 29 96.6 32 ....................T........ GACGTGAAGAGGGGGTACCGCTGTGCGCACCG 57647 29 93.1 29 ............T...............G CCGACCCCGCCGGCCTTCCCGGGCAGGGA 57589 29 82.8 32 .AA..G.T....T................ GCTCCGAAGTTCCGGGCCCGGCGGCGCGGCGG 57528 29 100.0 79 ............................. CTGCGCTCTCCCGCTCCCTAAGCGTGCGCCTTCTGCTCCCCGCTCCCAGTTGCCGGGCCAGCTCCCGGTCGGGAGCGTA 57420 29 93.1 32 .........................CT.. GTTTCGCTCGTCGGGAGGAATCCCGGCACGGG 57359 29 96.6 32 ......T...................... GTGCCCAATGAGCCGCCGGTGTTCCTGGACTG 57298 29 93.1 33 G...........T................ GCGGACTGGACGCAGAAGGCTGTGGAGTACCTG 57236 29 93.1 32 T........................C... ACGAAGGCCGCGGCCCCAGTGTCGTACCCGGG 57175 29 75.9 27 ................G....CCCTC.A. GTCAACGTCGTCCAGGTCGACGGAGAC T [57158] 57118 29 96.6 32 ..............T.............. GCGGTCGGCGCCCGGCCGCCCGTGTCCGGCTG 57057 29 100.0 32 ............................. TGGCCCTGGATCGCCGGCGCGCTGGGTGGCCC 56996 27 89.7 0 .....T.......--.............. | T,A [56971,56995] ========== ====== ====== ====== ============================= =============================================================================== ================== 36 29 97.4 33 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCCGGCGTCAACTACGACGGGCCCGACTACGGGGACGAACTCTGGTGACCGTCATCGTTCTCACCAACTGCCCCGCCGGACTGCGCGGCTTCCTCACACGCTGGATGCTGGAGATCTCCGCGGGCGTGTTCGTGGGCAACCCCTCGGCCCGCATCCGCGACGTGCTCTGGAACGAGATCCAGCAGTACGCGGGGCAAGGCCGAGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCATCCGGCCGACCACGAAGGCATCACCCTGATCCGCCGCCCCGACCCGAACGCACCCCCCACCGCTCCGTCTCCCCGAAACGGCCCGCCATCCGGCTGGAGCAGGGCCGCCAAACGCCGACGGTTCGGGAGAGGCTGATGCACACCGGAAGTCTTTTGTCTCATTTGTCGGAGTCGGAGAAAGTACTCGGCAACCGCCCCCAGCGCCAGTAAAACCGCAGGTCATTCAGT # Right flank : CCTTGGCCTCCGCCGCGTTGCGCGGTGTGTCCTGCTCCCCGCAGACGTTTATGGCGCCTCTATCCGAGCAGAGTGGCCGCTGGCTTCGTTCACTTCCAGCGACAGCGTTTGTCGATCTGTTTCAGCAGCAGTTGGTGCTCGGCGTCGCGGTGGGTGTTCACGAGAAATGACGGCACTGCGGCTTGGCGTGTCGGCGTGCAGGTCAACGTGCCCAAACGATATGGCTGAACGTGCTGTGTGCGCCCCAAGGCATCGGCGGTTGTATGGTCGACGCCTCAATCAGCAGGAGGGCAGCGGCAGGGCATGCGGGTGACGATGACGAGCGCTGCGGCACGGACTGGCCACGCGAACGAGGACTTCACCGGCGCTGTACCGACGGGAGTCGTGCTAATCGACGGCGCCGGCATCGCCGGCACCGAATCGATCTGCCGGCACGGCGTGGCCTGGTACGCCAGCCACCTGGGAGGCAGCCTACTCAGCCTCCTGTCACGCGAGCGGGA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 68896-70559 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68896 29 96.6 32 ............................A TCTGGTCGAGCAGCTTTCCGCGCACGGCGAGG 68957 29 100.0 32 ............................. GGGTTGGGTGTCGGCGAACGAACTAGGAGCCG 69018 29 100.0 32 ............................. CGGGGTGCCGGCACCAGAGGGGCCCCGGCCGG 69079 29 100.0 32 ............................. TGCCACGAGACCGCCGAGGAGCTCGCCGCCAA 69140 29 100.0 32 ............................. CTTCTGTACTCCAAGGGCGTCAACGTGGTGCA 69201 29 100.0 32 ............................. CAGCCAACCTCCGCTGCACCCACAGCAGCACC 69262 29 100.0 32 ............................. TCGGCGAAGCCGGTGCACAGGATCACGGCGAC 69323 29 93.1 32 ...............A....T........ CGTCTCGCCCGGCACGTCCTCGGCACGCTCGC 69384 29 82.8 21 ........G.....T........C...GG GCGGTTCCGAAGCGGACGCCT Deletion [69434] 69434 29 100.0 32 ............................. CCGTCGGCGACGATGTCGGCGCACGCTTCGGC C [69439] 69496 29 86.2 32 ......T..........AA......C... CTCCACCCCTGGTGGCGCGGGAACCGCGAGAT 69557 28 96.6 32 .....-....................... GACTACACCGCGCTCTTCGCGAAGGAGTGCAC 69617 29 82.8 33 .......AT........A....CA..... GGCAAGAAGGGCGCCCACGGTCGCCGCCGGCGC 69679 28 93.1 32 ...........G.............-... GGGACGCCCGGCTCGGTCCCGGAGGCGGAGTC 69739 29 96.6 32 .........T................... CCGCCTATGCCAGGATGTGGACCCATGGATGA 69800 29 93.1 32 .........T.............A..... GGCCGGCTCCGTACGGAAGCCGTGATCGACGC 69861 29 89.7 32 ..............T..A.......C... GCTTTCTCGGCTGCCCTGCTCGGCCTCGGCGA 69922 29 89.7 32 .................A.....A.C... ATCCCGCTCACCGTGTACGGAGAGGTGAGCAA 69983 29 96.6 31 ....................A........ GCTGCCATGGAGGTGCCGGCTTCGACGCCAG 70043 29 93.1 32 A......................A..... CAGTACCAGACCGCCCTGGCGCACCACGCGCC 70104 29 93.1 32 .....................G..C.... TGGGCCAGCACCTCGCACGCGGTGCTCTTGAA 70165 29 89.7 32 ............G....A.......C... GAGTGCGCGTACCCGAGATGCACCCGTCCTCG 70226 29 86.2 32 ...T.............A......A.T.. GTCGCCCGGGTGGTCTGGGCGGTGCGCAGAGA 70287 29 96.6 32 ..............T.............. TCGCAGTTCTGGGTGAAGCGTCCCTTATGGGG 70348 29 93.1 32 .................A......A.... TCCCGCAGCGCCCTGGTGGGGATGGATGCCAA 70409 29 100.0 32 ............................. GGGTTCCGGGCGCCGGTCGTGCGGGCCGGCTT 70470 29 96.6 32 ...................A......... TCTGGCCGAGGAGACCGGAAATCCGCTCCTCC 70531 29 89.7 0 .C.....T....................T | ========== ====== ====== ====== ============================= ================================= ================== 28 29 94.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGCCGGCGTGGCCTTGCCGATGTCATGCACACCCGCAAGCCACACAGCCAGGGCACGGGCATCCGCATCACCCCCCGGCAACACCCCGGCCACCAGAGCGCGCACCCCCACCGGCAGCCACCGATCCCACAACAGACCCGCCACCGCAGCGGCATCCTCCATATGCCGCCACAACGGCAACCACCCCTCGGAGTCCCGGTCAAACTTCGCCCACACCGACCGAGCCGGCCCCCCAAGCCGGCCCAACAAGCCGGAACAAGCACTCCCCTCACCACTCATGAGCGATAGATACAGGCAGCAACCACCACCCCACACAAAAACAAGCCAACCGGAGCATCTGCAGGGCAAACAGCCACCCCCGTCACGTAAAATCATCCGCTTGCTCTGATCCAGCGAGAACCACCTGCGAGACCGAATACCCCTAATGCCCCATTGGCCGGAACCCGCAATAGTCACTGAAAACGTCTCCCTGCGGCAATAAACCCACAGGTCAACAAGT # Right flank : TGCGGTCACCTCCACCACTCCCCCACGTCCTGTCCATGACGCATGGTGGGTTCAGGCCCGTAAGGTCCACGGCGAGCGGGACAGCACCCGGGCGCTGATCGAGGTGCTGCTGCTGGCCCGGCACATCCTCACAAGTACCTGGTCGCCGGGCTGGCCACCGCCCTGCGGGCCGGGGCCCTGGCCGCGGACGCGGTCGCTTTGGAGGCCCGCAAGGCCGCCCAGGCCGAAGACGACCCGCCTGTCACCACTTTACCCTCAGGCGGCCCCGGGTCGGCGACGGTGACGTTTCTGCACGAGTGGCGTCTTGCCCACCTGCCGCCGGACACCAGGCCGCTGCCCTCGGTGACCCCCTATGACCAGTTGCGCCGCCACCGTCGCGCCAGCGGCGGCGCCCATCCAGAGGGAGAAGCCCAGTGACCCTGCCCCGCCAGCGAGGCTTGACCGAGCAGACCGCCGACGCCGCCATCGACACCGCCTGCCGCATGCTGCGGCTGCGGCTG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 180230-179683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 180229 37 97.3 36 ....................C................ TCTGTGTCATGGTGGTGCAGCCCCGGAAACGGGGCG 180156 37 89.2 36 ...........T..T.....C..T............. TGCCTCCACAGCGGCTCGCACTTTTCGCCGTCCGGG 180083 37 100.0 36 ..................................... ATCGGCGCGGCGGCGGCGAAACGGCTTGTGCCGCAG 180010 37 100.0 36 ..................................... GACTGGGACATGTACCACGACGTCGGCCTCGACAAG 179937 37 89.2 36 ..............T.....C.........A.T.... GCACGTACGCTCGGAGGTGCTGCGGCCGGGTCCCGA 179864 37 89.2 35 C.............T...A.C................ GGATCGTCGGTCTGCATCCGCGAGCATCACTTCGG 179792 37 89.2 36 C............C..A...C................ CCCATCGCCGTCTTCTGGTAGACGACCGTCGTCGGC 179719 37 83.8 0 C.A...........T.....C.TT............. | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 92.2 36 GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC # Left flank : CAGCCGTTACCCTCGCATCCCTGCTGATGTGGGCGTGACATTTGACGACAACTCCTAGCCCAGCTGGCCAACGCCGCCTTCGCCGCGTCGCGAAACTCTGTGAAGGCCACGGCCTGCGGGTCCAGAAATCCGTTTTCGAAATCGTCGCCGATGAAAAGACACTCCTCACCCTCCTCCATGACCTCGACCAGATCATCGACTCCGACACTGACAGCATCCGGCTCTACCGGCTGCCCGTCGACGGCTTCGACCACGTCCAGACTCTCGGCATCGCACAGGTCCAGCCCCATCGTGGAGACCTTGTACTCTGACGGACCATGACGCCCGCTAGTCGACCGACGGGCGGATGCGTCTTCCTCCCGCCCGCCTGCTTCGGAACCGGAAGCACACACGCGACACGCGGATCGCACCGAAGCAAAATGTCCGCATTCAGCAGCTCTGTCGCCTGTCGCTCCACTACTCGGGAGCGAGCGGTAGGCTGATTTTGCTGCTCAGGCAGC # Right flank : ATCGACATGAACAACTTGCGTACGCCGGTGCGTGTGATTGAGACGGAGCGGGCGCTTAGAAGGCGCTTGGTGGATCACGAGTCACTCCCTTGCTGACCTGCTTCTCTTTGCGTGCCGCGCGGGTCACCGACTGATCTTCGACACGCATTCGACACGGCTCGGCCTACTCGTACACGGTCGCCGCTTGCAGGGCTCGGGCGAAGAACATCCAGTCACCACCGGGCGGCAACTCCCGGCCGGTGTTGCCGTACCAGCCGTCCGCATCGTCGATCCAGGCGGCCAGGGCCTCCAAGAAGCTCGGAAGGTCCGCGTTCTCCCATGAGCTTCCTTCTTCGGCGTGGCTGCGGCGCAGGGAACGGACGAAGGCTGCCAGGTCTTCTCTGCTGCCGACGTGATCGGGAGAGGTGGTCATGCCTGCGGACCCTACTCGGCACGCCAATCTGAAGGCGCTCTGTGCGAGCGGAGCTAGCGGTTGATCGGAATCTCGTAGACGATCTCGC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 184304-183020 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 184303 37 75.7 36 .C..T....A...C.A.AA...A............G. GCGGACGGCACGATCTATCTTTGCGGCAGAACGCAG 184230 37 91.9 36 T.............T.A.................... CCGGAGGCGGCATGGTGAAGGCTGGCACCTGGCAGT 184156 37 94.6 35 C...........................T........ GACTTCTACGTCTCGGTGACCGCTGACCAGCTCAC CGGC [184133] 184080 37 97.3 36 ....T................................ ACCCGCTCACCCACGCGCGCGGACACCGACGGCAGC 184007 37 91.9 38 ..C.........T....A................... CACAGCGCCCAGCGCAGGCGCGGGTCACGGACCCTCGG 183932 37 97.3 36 ...........T......................... ACGTCGGCCTGGCGGACGGGGGCCAGGTCCTCGAAC A [183914] 183858 37 94.6 37 ....................T.........C...... ATCAACTCCGCGCAGGCCCGGCACCCCGCGCTGCCCC 183784 37 94.6 35 ............G....................T... GCCCTCTACGTCGAGCTGAAGCCCCGCGGCTGGGT 183712 37 91.9 37 ...A......T.........T................ ACCACCTACGAGGTCGCCGCAGACAACAACTTGCCCG 183638 37 97.3 36 ...........A......................... GGCATCACCCCGACCACCGGCAGCCCCGGCGGCTTC 183565 37 94.6 36 ...........T...........A............. TGCTTGGCGGCGCGTACGTTCACTCGGGCCTCGACC 183492 37 94.6 31 ..............A...............C...... AGTTCGGCCGGTTCAGAGTGACCGGTTACGG 183424 37 94.6 36 .G..................T................ CGTGAGGGCGCGGCGTGGCTGTGCACCGGCTGCAAG 183351 37 91.9 36 .................A....A.....A........ AGCGCCTCGTACACCTTGCCCCGGCCGGCCACGATG 183278 37 100.0 37 ..................................... ACGTTCGACACGGGCCAGGAGAAGGAAGACCGGCTCC 183204 37 94.6 36 .C........T.......................... GTCACGGACATACGCCCTGACCGGGCCTGCATGGTC 183131 37 100.0 38 ..................................... ATCTCGTCCATCGTGAGGATGGCCAGTCGCCAGGGCTT 183056 37 86.5 0 ..........T.....A.....A.T.........T.. | ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 93.5 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : AGCACCGCTACCGCCTCCAGGCAGGACAACACTCCAAGGACCCCAACGGAGCCACCGGCGAAGTCATCGAAGCGCTGCGCGCAAAACTGCACTACCCGGAGGTCGCGCGCAGAATGAGGATCATCGACAACGAGCACTCCGTAGCCGTGGTCGTCATCCGCCCCCACCTCAAAGAAGAAACCCGACAGGCCGCCCAGAACGCCGTCGACCAGCTCCGCCGTGGCCTGCCAACACCGGCGACCTACCACACCCTGCAGGAACACATGGCGTCCATCCCCCAGCGGGAACTGGAACTGGCAATCAACGCCGGCCACGCCATCGAAATCGCCGGTGATCTGCACCAGTGGGTCGGTTCCTACCATCCCCAACGAGGTATCGAACCTCTTACATGACCATCCAGACCACCAAGCAGCGACTCGTCGATGCGCTGGTCGAGACCATGGTGTGATGGTCAATGGCATAGGAATGAGAGCTTAAAACCCTTGAAGTCCCAACCAGGC # Right flank : CTCCCCTGGACGGCCGCCTGATGGACCTGCTGCTCACCTACGACGTCGACACCACTAGTACTGCAACGGTGCTTGCCGTGACTGATGGCCAGCTCAGTCGTTGGTGTGGTTATGGGTGGGGACCTTGCTGATGTCAGGCTGTGGGCCGGTGAACTGGACGCTGTGCATGACCGGTTCGTGCACCGGTTCAACAGGGAAGAACCGCGTCAGTCGGCGCTCGCTTACATGCGAGGCTTGGTCGCACCGCTGGAGCGGAAGAACGGCTGGACGCTGGCGGAGGAAGCCGGGCACGAGGGTCCCGATCGCATCCACCGGTTGCTGAACCGGATCGAGTGGGATGCCGACGAGGTCCTGGACGACGTACGCGACTACGTCGTGGAACACCTCGGCGACCGAGACGCCGTGCTGATCATCGACGACACCGGCTTCCTGAAGAAGGGCCTGCGGTCGGCCGGGGTGCAAAGGCAATACTCCGGAACCGCCGGCCGGACCGAGAACTG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-43] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 194635-194303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 194634 37 100.0 36 ..................................... CACGTGGTGTCCGGGATGAACTCGGTCTATCCATCG 194561 37 100.0 36 ..................................... GTCCACAGCGTGTCCGCTCCGGCCGACGGCTGCACC 194488 37 97.3 40 ........T............................ ACCGCCGTCCCCCCCCCGCGCGGAGTCAGGACCCGCTCGG 194411 37 91.9 36 ...................G.C.T............. GGCGTCGGCAAGACCTGGATCGCAAGCCGGCTCGTC 194338 36 91.9 0 .............-.....G................T | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 96.2 37 CTGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Left flank : GCCTGCCGAGAAGGGCCGCTGACCTGCGGTTTCCGTGGGTATGCATGATGCGCGCTATGGGCGTTACGGGCGATATCTTGACGCTCAAATGACGCTCTGTGAGGCATCTTGACGCTCATTTGACGCTCGTTCTGATGGGGCATCAGGTGTATCGCGCTGCGGGCTGTCGGGGACATCGAGCTGCTCACCCAGCCACCACCGTCCGGACCGCAGCCCCCGAGCCAGCAGGGCCGTTGTCGGGACGCGGTCCCGGGCGAAGTGAGTCGCCAGCGCCTCGACATCGGCCTCCCTATGGCGATCGCGTACTTTGACGAAGCATGATGGCCGCGATACGGCCGACGGTTGGATGTGTGTTCCTCCCTCACGTCTGCTTCGGAACCGGAAGCGCACACGCGACACGCGAATCGCACCTAGGCTGTATGTCCGTATTCAGTAACTCTGTTACCCGATGCGCACCCATAGAGGAGCGAGCGGTAGGCTGTTTCCACTGCTCACGCAGC # Right flank : GCGCACCACGTCGGTGGCCAGGGGGCAGTGGCCTTCTGGCGGTTGTCCTGGGGCGATCGTTGATCGGTGAGTTGCACCTGTTGTGTCTTCGGGTCTTCGACGCTTCTGCTGGCTTGGGCTCGGATGCTGGAGAGGTGGTGGCTGCCAGGTCAGCAAGAATATAACGGCTTCGCGGCTCGGTGTTTCCGGTGCGGTCCAGGCATTTGGGCGGTGCTGATTCGGGTCTGTGGCGGGCCGGTGTCCGAGGGGGCGGATACGGTCTTGGTCTCGGCTGGAGGGTGCCGTGCGTCTGGTGGGGGAGGAGAGGGTGTAGTGGCGGGTGTGTTGTATGCGCATAGCCTGAGTGGTGTCTCGGGGGTGCGGCACACGCTGGAGGACCACTTGCGTGGTTCGGCTGCGTTGGCGCGGCGTTTCGGGGAGGTTTTCGGGGCCGGGGAGTTGGCGGAGTATCTGGCCTTGGTGCACGACGTGGGCAAGGGGGCGTGTGCGTGGCAGGACGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.10,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 8289001-8288541 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 8289000 33 90.9 28 ..............................ACC TGCTGGCCGCCTGATCCGAGAGGACATC 8288939 33 100.0 28 ................................. CCCGGGCACCAGGCCGACAATGACGGCG 8288878 33 93.9 28 .............................A.C. CGGTCGGGCGGGTGGCGACCGCGTTCGA 8288817 33 93.9 28 .............................AG.. GGCGGCGTGCAGCCACTTCGTGGTCTCC 8288756 33 97.0 26 ...............................A. GACGAGGAGCCCGAGGACGAGCCGAC AG [8288726] 8288695 33 90.9 28 .............................TAC. AGAACCTCCAGCGCGCGCTCTCCGTCGA 8288634 33 97.0 28 ..............................T.. CGCCGTCGTCACCGTCGATCGTGTACGT 8288573 33 90.9 0 ...............C...A............T | ========== ====== ====== ====== ================================= ============================ ================== 8 33 94.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : GCTTCGTGGTCAGGCCGCCACGCGAGCGCCCGAGCCCATGGTCGTCCGGCTCGACGGTGACGCCGCCGGGCGGTTCCTTCTGCAGTTCCCCCTTTTTCCTCGCCCCGGCGCCGTGCTGGTGGGCCCGGCACACCGTGGAGTCGACGTTGATGTCCCAAGTGATCAGCTGTTTCGCGTCGGCCTGGGCCTGCAGCGCGGTGAAGATCCGAAACCAGGTGCCGTCCCGCTGCCACCGGCGGAACAGGTCGTACGCCCGACCCCACGGTCCGTACTCGGCGGGGAGGTCCCGCCACGGGATGCCGGTGCGAACCCGGAACCGTATCCCGTCGATCAACTGCCGCCTGGCCCACATCGGCGGCCGTCCAGGCCTCTTGCCCCTCGGCAACAGCGGTTCCAACACCGCCCATTGCGCGTCCGTCAGATCTCCCCGTGCCATGGCCCAAGATCATCGCACGGTGAAGATCCACTTTCGATACACGCCCTAGTGCGCCTAGGAAACG # Right flank : GGAAGGGCCACCACGCAGGGCGACACCAGACCACATTGGCTGCCCCAAACGGCCAGCCCGCATCAGTCACTCAGCGTGTCCACCGAATTGATGGGCCGGGAACACGCTGCCACCGGGAACTGGTCTCGGCGACGGATTCCCTGGGGAGAATCTGGGGAGTATCCGCGTCGCTGGGGAGCGCGTGGGGAGAATCGACCACACAAGACGGCACGCCCGTGAAAGACGCTGAAAGACACAACTCCCCTGGCCAGCAGTGGGAATGGAGGAATCACCGCAGGTCCGCGCCCCTAACCGGACAACTTCTCCGGGAAGACCACGAGGCGGGCCCCGGCCCGGGCGGCGTCCTGGACCATGGCCGCCACGGTGGCCACGTTGGCCTCGACATCGCCGGCCTCGGCCTGCGCCTGTGCGGCGGCGATGCGGAGCGGGCGTGAGGGGAGCGGATGGAGGCTGTGCTGGGCTGCGTGTTCTGTCACGGGCCTTCACCCTACCGCCGCGCC # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:-0.02, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 8291954-8290762 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 8291953 33 97.0 28 ...............................G. CGTCATCCTGCCCATCGTCGTCGGAACC 8291892 33 93.9 28 .............................G.G. TGGGCACGGCGGCTACTTCCTCCGGTCC 8291831 33 93.9 28 .............................AT.. ACATCGGCATGCCCGCCGCCGCGTTGAC 8291770 33 90.9 28 .............................C.TT TCTCGACGCCTACAGTCTGACCGTCACG 8291709 33 90.9 28 .............................CGT. TCGCCGGGGGCTGGACTCTCGCCTCCAG 8291648 33 100.0 28 ................................. CGCCTCGAGGTCGACTGAGGACGACTTC 8291587 33 90.9 27 .............................CT.A CCTGGGCCGTCGGCCGGGGGCGTGCCC T [8291559] 8291526 33 97.0 28 ................................A GGCGGACCGCAGCGCGGCCGTTCGGGCG 8291465 33 87.9 28 .............................GGTA TGCGGACGGGGAGATCGCGGACCGTCTC 8291404 33 93.9 28 ...............................GT GGACGGTGACGATCCGAGGGTGGGACAG 8291343 33 90.9 28 .............................C.GT ATGTCCTGCTGAGGGGCCGTTAGATTGA 8291282 33 93.9 28 .............................A..T ACGCGGTCGTGGCGCCGGTCGGGACGCA 8291221 33 100.0 28 ................................. GCAGGCACGTGCAACCTGATCCGGGGTA 8291160 33 90.9 28 .............................CAG. CGCAGCCGGTCGGCTGCCACGGCTCCAC 8291099 33 93.9 28 ...............................GA CCAACTCCTCCACCGCTCCCCCGGCACC 8291038 33 87.9 28 C............................CGG. TCCGCCCGCGCCCGGTCCCGGCCACGCC 8290977 33 93.9 28 ...............................GC CGAGGATGGATGCCTTGGAGGCGGCGGC 8290916 33 90.9 28 .............................CGG. TGTCGGCGCCGGCCTGGTGGAGGTGGTC 8290855 33 84.8 28 .........A...................GAAC TAGAGACGATCAAGAAGCGGTGGAACGG 8290794 33 87.9 0 .............................CGTT | ========== ====== ====== ====== ================================= ============================ ================== 20 33 92.6 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Left flank : CGCCCAGCTCAGCGCTGAGGTACTGGCTACCGTGCAAGGAACAGAACTGGAAACCTGACAGCTTCCCGATGTCATGCAGACCAGCACACAGCCCCACGACGTTTCTCGCACGCTCCAACTCACCCGCCAACCCCATCCCGTCGGCAATCCTCGCCCGTTGGTTTTCGGACAGGTAGGCATCCCACAGGTGCAGCGCCATCGCGGCAGCGTCCAACAGGTGCCGGATCAGCGGATACGGCGGCAGCCCCGGACTTAAGCCCCTCGACTTCCCCCACACTGACTCATCCGGCGCATCCCACTTCTTCGCCATCATCGCCCTCTCACCCCAGCCAGCAAATGCCGTCCCAGCACTGAAGCCGGCATTCAACCACCCCCCACTGACAGCCCTACCTTCCCCCGCCTCGGTAAGCTGACAACATGCATCCCTACCCGCCCCGACACGGCGCTCCCCTGAAAGCAAAGAACAGGCAAAGCCCCCTTTAAGTGCCAGGTCAGAAAGG # Right flank : GGGTCCTTGCTAGGGCGTGTATCGAAAGTATTTCCGGAGCGGTCGTCGGGCCGCTCCGCTACGGTGCGGCCATGGCGAACTTTGTGCTAATTGCAGGTGCGCGACTTGGATCGTGGGCGTGGGACGATGTGGTGCCGCATCTGCGTGCGGCCGGCCATGGCGTCCACCCGCTGACGCTGTCCGGTCTCGCTGAGAAGCAAGGTGTGCCGGCTGGTCAGCAGACCCACGTACAGGACATCGTTGATGAGGTCGAGCGCCAGGACCTGCGTGAAGTCATTCTGGTAGGTCACAGCTACTCGGGTGTCCCGAGCGGTCAGGCCGCCGGGCGGGTCGGCGACCGGCTAGCGCACGTGGTCTTCCTTGACTCCAGTGTTCCGGCCGATGGTGAACCGTTCGTCTCCGCCTGGCCGGACGGCGGGGCGATGGTGAGGGCATCGATCGCCGAGAACGGAGGATTCTGGCCGGTCGCGCCCGCGGCCCACTTCGAGGGCCACGGTCTC # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 8301799-8302791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8301799 29 100.0 32 ............................. GTGCTCGCTGGGGCTGCCGTCGCCTGGATCAT 8301860 29 100.0 32 ............................. GCGCACACCACCCAGCACCACGTCGCCGACTC 8301921 29 100.0 32 ............................. TGCCGTTGCGGCACGTCGGCGCCCGCCGTTGC 8301982 29 100.0 32 ............................. CGGGGCTCTTCGGCGTCCGCCGCCCGGCCGCC 8302043 29 100.0 32 ............................. GCCATCGAGCGCGCCTTCGGGAAGAAGGCCGC 8302104 29 100.0 32 ............................. CTCACGATCTGCAACTGAGGCATGACTCCACG 8302165 29 100.0 32 ............................. GTCTGTTCCTTGGCTGGGCCGATGCTCATGGG 8302226 29 100.0 32 ............................. GTGTGGAGTCGGCCGTGGCTGAAGCACCAGGC 8302287 29 100.0 32 ............................. CCGCCATACGCGCCGCCCTCGCCTCCGCCGCC 8302348 29 93.1 32 .T..........................C CCGACGGCGGGTTCCACCCCGACCACGCGGCC 8302409 29 96.6 32 .T........................... GTTCGCCGGCCGCCCCGGGCCTCCCAACCCGC 8302470 29 96.6 32 .T........................... TTCGTCGAGGGTGATGCGCTTGCCGGACTGGA 8302531 29 93.1 32 .T.......................C... CATCCCCGCGATGGCGAGCATGCCCAGGGTCT C,G [8302541,8302549] 8302594 29 89.7 31 .G............T.........A.... GTGTTCGTGGCCGTCACGCCGGTGGCTCGGC 8302654 29 82.8 32 .C..A..T..................T.A CACGACGCGGTGACGCGCGAGGAGCTGCTGGC 8302715 29 82.8 19 .T...........GG..........GA.. GTCGTGTACGCACGGCGGA Deletion [8302763] 8302763 29 69.0 0 .TTT.T.......GT..A.......CT.. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.3 31 GACCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CGATGTCCAGTCCCTGCTGACCCCACCCCACACCCACACCGCAGCAACCGACGACGACACCGACGACGAAACCTCCGAACGGCATGACGTGCGCATGGTCCACCTCTGGGACCCCAAAACCGGAGTCCTCCCAGCAGGCGTCAACTACGCCAACGGAGGCCACTGATGCCTTCCATGGTCGTCATCGCCACCACCGCGGTCCCCACCCACCTACGCGGCGCCCTCAGCCGATGGACCAGCGAAGTAGTCCCCGGAATCTTCGTCGGCAGCGTCTCGGCCCGCGTCCGCGACGAACTCTGGCACAACGTCACGCAAGTTGTCGGTGACGGTGCTGCCATCCTCGTCCATCCCGCCGCCACGGAACAGGGCTACGCCATCCGCACCGCAGGAACCCGCCGCCGGACCCCCGTCGACTTCGACGGCCTCACCCTAATCCGCATGACCGCCGCACCCCAGGTAAAGAAAACGCAAACCCCCTCTTAGTGCGCAGGTCAGAAAGG # Right flank : GGCGTTCGAGGAGTAGTGCGGCGCCGCCTCGAATGTATGCGTTCGGTAAGCGGCAGGAAAGGCACACGGCTCCGGAGGCCGTCGCTGTTTGTCTGGCCCTGCACCAACTCGTTCAATGCCACGTTCGAGCCGTCACCGCCTGTCAGTACCGTCGGTTCCTCTGGGCCCGCGGTACGGTCGACCGCCCGCCACCGACCGAGGCCACGGTCCCAAGTCCCAGCAGGTCCATGCCGAAAAGCCGGCAGCGAACCAGGCCCACGCTGCGCCGGTGCCCGCACACGGCGTGCGCGTCGTAGTGGATGAGCTCTCGGTGACGGAGGTGAGCCTCGGACTGCTCGACTTGTACAGCTCTCGACCTTCGAATGTGGCGTAGAACACATGGTGGCCGCAAAGGGAATCCCTCCTTTCGGTGGGTACGCCCCTATCTGTTGCTCTAGGCGTGAAGACGTTGATCCGCTAAGTTCCCCCCGCTAATAATCTTCATGAAACTTCAGAAAGTG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GACCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 8327931-8329213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8327931 37 75.7 36 .C..T....A...C.A.AA...A............G. GCGGACGGCACGATCTATCTTTGTGGCAGAACGCAG 8328004 37 91.9 36 T.........T...T...................... GTCGTGCCGCCCATGGTCCGCGGCTTCAGACTGGCA 8328077 37 91.9 35 ..........T...T.............T........ GACTTCTACGTCTCGGTGACCGCTGACCAGCTCAC CGGC [8328097] 8328153 37 97.3 36 ....T................................ ACCCGCTCACCCACGCGCGCGGACACCGACGGCAGC 8328226 37 91.9 38 ..C.........T....A................... CACAGCGCCCAGCGCAGGCGCGGGTCACGGACCCTCGG 8328301 37 97.3 36 ...........T......................... ACGTCGGCCTGGCGGACGGGGGCCAGGTCCTCGAAC A [8328319] 8328375 37 94.6 37 ....................T.........C...... ATCAACTCCGCGCAGGCCCGGCACCCCGCGCTGCCCC 8328449 37 94.6 35 ............G....................T... GCCCTCTACGTCGAGCTGAAGCCCCGCGGCTGGGT 8328521 37 91.9 37 ...A......T.........T................ ACCACCTACGAGGTCGCCGCAGACAACAACTTGCCCG 8328595 37 97.3 36 ...........A......................... GGCATCACCCCGACCACCGGCAGCCCCGGCGGCTTC 8328668 37 94.6 36 ...........T...........A............. TGCTTGGCGGCGCGTACGTTCACTCGGGCCTCGACC 8328741 37 94.6 31 ..............A...............C...... AGTTCGGCCGGTTCAGAGTGACCGGTTACGG 8328809 37 94.6 36 .G..................T................ CGTGAGGGCGCGGCGTGGCTGTGCACCGGCTGCAAG 8328882 37 91.9 36 .................A....A.....A........ AGCGCCTCGTACACCTTGCCCCGGCCGGCCACGATG 8328955 37 100.0 37 ..................................... ACGTTCGACACGGGCCAGGAGAAGGAAGACCGGCTCC 8329029 37 94.6 36 .C........T.......................... GTCACGGACATACGCCCTGACCGGGCCTGCATGGTC 8329102 37 100.0 38 ..................................... ATCTCGTCCATCGTGAGGATGGCCAGTCGCCAGGGCTT 8329177 37 86.5 0 ..........T.....A.....A.T.........T.. | ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 93.4 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : TACCAGCACCGCTACCGCCTCCAGGCAGGACAGCACTCCAAGGACCCCAACGGAGCCACCGGCGAAGTCATCGAAGCGCTGCGCGCAAAACTGCACTACCCGGAGGTCGCGCGCAGAATGAGGATCATCGACAACGAACACTCCGTAGCCGTGGTCGTCATCCGCCCCCACCTCAAAGAAGAAACCCGACAGGCCGCCCAGAACGCCGTCGACCAGCTCCGCCGTGGCCTGCCAACACCGGCGACCTACCACACCCTGCAGGAACACATGGCATCCATCCCCCAGCGGGAACTGGAACTGGCAATTAACGCTGGCCACGCCATCGAAATCGCCGGCGATCTGCACCAGTGGGTCGGCCCCTACCATCCCCAACGAGGTATCGAACCTCTTACATGACCATCCAGACCACCAAGCAGCGACTCGTCGATGCGCTGGTCCCATGGTGTGATGGTCAATGGCATAGGAATGAGAGCTTAAAACCCTTGAAGTCCCAACCAGGC # Right flank : CCTCCCCTGGACGGCCGCCTGATGGACCTGCTGCTCACCTACGACGTCGACACCACTAGTACTGCAACGGTGCTTGCCGTGACTGATGGCCAGCTCAGTCGTTGGTGTGGTTATGGGTGGGGACCTTGCTGATGTCAGGCTGTGGGCCGGTGAACTGGACGCTGTGCATGACCGGTTCGTGCACCGGTTCAACAGGGAAGAACCGCGTCAGTCGGCGCTCGCTTACATGCGAGGCTTGGTCGCACCGCTGGAGCGGAAGAACGGCTGGACGCTGGCGGAGGAAGCCGGGCACGAGGGTCCCGATCGCATCCACCGGTTGCTGAACCGGATCGAGTGGGATGCCGACGAGGTCCTGGACGACGTACGCGACTACGTCGTGGAACACCTCGGCGACCGAGACGCCGTGCTGATCATCGACGACACCGGCTTCCTGAAGAAGGGCCTGCGGTCGGCCGGGGTGCAAAGGCAATACTCCGGAACCGCCGGCCGGACCGAGAACT # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 8332003-8332826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8332003 37 100.0 35 ..................................... TCGGCGTCCGCGAACACCCGGTCCGCGGCCTGGTC 8332075 37 100.0 21 ..................................... AGAAATCCGTACGCCACGGAG Deletion [8332133] 8332133 36 70.3 37 AG...-.AA.AT...G.T.....TT............ ACCCGATGGATATCGGCGGATGTGAGTCCGACGGAGA 8332206 37 100.0 34 ..................................... CCATGTCTGCCGGAGGAGCGGAGACGCCCCATGT 8332277 37 97.3 36 ...............T..................... CGATTCTGAGGTCGGTGAGGGATCATGACCTGGACG 8332350 37 97.3 37 ..........................G.......... AGGTCGTCCGGCGATCCGGTCCGGAACCTGACGCGGG 8332424 37 97.3 37 ...........T......................... TTCTGGGAGGTCCGCGGATGGGGCCGCCACGGCACCA 8332498 37 100.0 37 ..................................... GGCGTCTGCAACACCCCCGGCTCCGCGCGCCGCGCGT 8332572 37 97.3 38 .............................G....... CCAGGCGTTCGCGCACGTCACCGGCCCAGGTGAGCATG 8332647 37 97.3 34 .................A................... GAGGCGCGGTAGAGGGCGCCGCCGAGGAAGGCGT 8332718 37 100.0 35 ..................................... GCCGACTCCGGCCGGAGCTTCGGCCACCCTCGCGT 8332790 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 96.2 35 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : GCAGCCGTTACCCTCGCATCCCTGCTGATGTGGGCGTGACATTTGACGACACCACCAGCCCAGCTGGCCAACGCCGCCTTCGCCGCGTCGCGAAACTCTGTGAAGGCCACGGCCTGCGGGTCCAGAAATCCGTTTTCGAGATCGTCGCCGATGAAAAGACACTCCTCACCCTCCTCCATGACCTCGACCAGATCATCGACTCCGACACCGACAGCATCCGGCTCTACCGGCTGCCCGCCGACGGCTTCGACCACGTCCAGACTCTCGGCATCGCACAGGTCCAGCCCCATCGTGGAGACCTTGTACTCTGACGGACCATGACGCCCGCTAGACGACCGACGGGCGGATGCGTGTTCGTCCCGCCCGCCTGCTTCGGAACCGGAAGCACACACGCGACACGCGGATCGCACCGAAGTCAAATGTCCGCATTCAGTAGCTCTGTCGCCTGTCGCTCCACTACTCGGGAGCGAGCGGTAGGCTGATTTTGCTGCTCAGACAGC # Right flank : TAGCAACCTCGCCCGGGTCCGCTCCTGCTCGGCGGACCGTTTGCAGGGTGATCAGCTAGTCGGGGATCTCATGCACACCCATGGATCTTAGGTGGCGGGCGCCCAGTGCTGCCGGTTCCCTTCACCGACTGATCGGGTGCAGCACCTCCCAGCGATCAGCTGGTCGTCCGGCCGGGCCGGCATCCGGCTGGGCTGCGCAGAGAAGCCGCCGTCGTTCGCGCTCGGGCTGGGCCGGACCCGCTCGATGCGTCTGCAGGTCATCTCGCGTATCCCCTGAACGGGTAGAGGCTGAGGTTTCCCGGGCGCGTCGCGTGGAGTCGCCGTTACGAAGAGCACGACCAGTGATCTCCGAAAGGACTCCGTCGTGCGTTTCGCCCAGACCGCCGCCCCCGCCGCTGCCCTCGCGGCCCTGCTCACCCCCGCCGCCGCCCATGCCGTCCCGGCCGCTGATCCCATCGGGCGCGCCGCGGGCCGGGCCGTCACCCTGCCGGTGCGCGACG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 12 8385712-8386187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 8385712 36 100.0 38 .................................... GAGCACAGCGATCCGGAGCCGGGCATCCTCCCGCAGGG 8385786 36 94.4 39 ..........G..........G.............. CACTCCGGGACCACCGCATCCGGGTACACGACGTCCAGT 8385861 36 91.7 36 ...................T.G........T..... GGCACGCTGGAGCACATGAACCGCACCGGCGAGATG 8385933 36 88.9 37 ..................G.AG......C....... GCCGTGCTGACGGGGCGGGGCGTGCGCTGGGTGGAGG 8386006 36 91.7 37 ..................G..G.........T.... ATCGACCCTGCGTACCTGCACGGCGAGCACGCGAACC 8386079 36 100.0 37 .................................... CTGCCTACCTGCGGAAGGTGGAGCCGGGCCCCTACGG 8386152 36 94.4 0 ..................G..G.............. | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 94.4 38 TGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Left flank : TGGGTGCGCATGATGTGCGCTATGGGCTTTACGGGCGATATCTTGACGCTCGAATGACGCTCTGCGAGGTATCTTGACGCTCATTTGACGCTCTTTCTGATGGGGCATCAGGTGTATCGCGCTGCTGTTCAGGCGGTCTCCTGGTTTCGTAGGTGTGGCGGGCTGTCGGGGGCATCGAGCTGCTCACCCAGCCACCACCGTCCGGACCGCAGCCCCCGAGCCAGCAGGGCCGTTGTCGGGACGCGGTCCCGGGCGAAGTGAGTCGCCAGCGCCTCGACATCGGCCTCCCTATGGCGATCGCGTACTTTGACGAAGCATGATGGCCGCGATACGGCCGACGGTTGGATGTGTGTTCCTCCCTCACGTCTGCTTCGGAACCGGAAGCGCACACGCGACACGCGAATCGCACCTAGGCTGTATGTCCGTATTCAGTAACTCTGTTACCCGATGCGCACCCATAGAGGAGCGAGCGGTAGGCTGTTTCCACTGCTCACGCAGCC # Right flank : CGTCGTCTCCCAGGTCCCGGCCGACGAGCACCGTCTAGGCCCTGTCGTCAAATGATCTTGGCTGGTGGATCATGGTCGTGTGATGCGTCGTCATGAACTGTCCGATGCCGAGTGGGAGTTCGTTCGGCCGCTGCTGCCAGTCTCGTTGCGGGGCCGGAAGCGGTTGGACGACCGGACGGTCCTCAACGGGATCGTATGGAAGTTCCGTACCGGAGTGGCCTGGCGGGACGTGCCTGAGCGGTACGGACCGTGGGCCACGCTGCACACTCGTTTCCGCCGGTGGGCCAAGGACGGAACGTTCGAGCGGATGCTGCGGGCAGTGCAGGCCAAGGCGGACGCGGCCGGGGACATCGACTGGCTGGTGTCGGTCGACTCCACGATCGTGCGGGCCCACCACCACGCCGCCGGAGCCCGAAAAGGGGGCGTCGGGCACTCGGACGGTCGCGAGGCAGTCTGACCAGCAAGACATCTCATGTCGTTGGAGGTCAACTTCGGTGGGC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 13 8402289-8402692 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050504.1 Streptomyces sp. DSM 40868 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8402289 37 62.2 37 A.CCGC.AAAGA..G.......A............AC TCCTTCGGCTTTGGGCCTCTGGTCACAGCCTCACCGC 8402363 37 100.0 35 ..................................... GTTTGATGACGCCGGTCCATTCGAGGTGGTCGCCG 8402435 37 83.8 37 ...........T.C....AA...............AC ACCTGCGCGAGCAGCGTCTCCGTACCCGACCACTGCC 8402509 37 86.5 36 ....T......T.C.....................AT GACAAGGCGCTCAGCAACGTCCGCGCGGTCACCGGC 8402582 37 86.5 37 ..............T..............C.G...AC CCTCTCCTGTACCCCATCGTGGGAGTCGAGCCGCAGC 8402656 37 73.0 0 C..A....T.....T.T.....TT.A.........AC | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 82.0 37 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCACG # Left flank : GGGAAGTCGTCCGCCCAGTCGACCGACCTGGTGTTGTCGAGGACCGCGGCGGCCTCGGACGAGCACCAGGGTCGAAGAACGAGGCGGTCGGTGGTCAGCTGAATGTGGGCTGACGAAGAAGAGGAAGTCACGTGTCATTCCTGGTTCGTTGGAACGACCGGCCCGCGCTCTGCTAACGCGCGGGCCGGAAAAGGGCATGCTGAAGACGGCCGACGGCAGCCATATTCATCAACCTCCCTGTCCCGTGATCACGCGTCTCTCGCGCTGGCGTGACGGTAGCAACCTCTCGCCGGCCTGGGCAAAGCGTTTTTGGTAGACCATGGCGAGCGCAGCGGCCTCGCTGCCGGCGCCTTTGGTGACCAGTGAACGCGCCGACCTGCTTGTCTCACGGCCACTGCACAAGTGCAGCCGATATGAGGCAGGGCGTGAGACTGTTCAGCGAAATCTGAGACCCTACACAACGGAGGTGTACAGCAGTTCGCCCGGGGCAGACAGGAAAG # Right flank : CATCGACATGGACAACTTGCGTACGCCGGTGCGTGTGATTGAGACGGGGCAGGTGCTTAGAAGGCGCCCGCTCCAGTGCTTGTGGAATGGGCCCTGACCTGGGAAAACGTGATTTTCTCCGCCGTCCCCTCGGACACCGGGGGACGCATGGGGGAAACGTATCTTCCCGATGACTGGGGGACGCGATGTCCATCTGACGTCCGTACGCGCAGGATCTCACATCACCTTCGGATTAGCCGACCTTCGTTGAAACAATTCCGCGCCCCTCGGCGTTACGGATCTTGAAGCCGAGGAAGGGAAGGTGTGGGGCCTGAAGCTGTTCCACATGACACAGAGCGGCGCGGCCGAGGTCGCGCCGCGTCTTGCTGAGACGGAAGCGGATGTGCAGGCTCAGGTCGAGGTACACATGGAGACGTTGCTGGGCGTCCGGTTCCTGGCGAGTGAGTACAGCACGGGGCCGGTCCATGGGGGCAGGATCGATTCACTCGGTCTGGACGAGA # Questionable array : NO Score: 3.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.10, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //