Array 1 855195-851385 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML776472.1 Sodalinema gerasimenkoae IPPAS B-353 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 855194 37 100.0 39 ..................................... CTGGAAATATTGTAACACACTAAGGCGAGTATGAAGCAA 855118 37 100.0 33 ..................................... CCGATAAAAAAGCCCGCCCAAAATCAGGAAAAG 855048 37 100.0 35 ..................................... CATCAGCTTACGACCCCCACCTCAAAGTTCCGATT 854976 37 100.0 34 ..................................... CAGGGGTTCTCGCTTATGGCAAATCTCATAGCGG 854905 37 100.0 36 ..................................... GAGGGGACACGATTGCCAGCACCGCCAGTATTGGGG 854832 37 100.0 35 ..................................... GTACGTCACGGTCACAGATTTGTGGTTTAACCACC 854760 37 100.0 49 ..................................... TTTATGGGCACTGGCACTTTGACCGCAATTTTTTGCGCTTTAGTGGCAT 854674 37 100.0 40 ..................................... TCGCCCAGATTCTATCCAGCAGCGAGTTTGCAAACGGAAG 854597 37 100.0 36 ..................................... GGGATAGCCCGGGTCAACTCCATCAGGCCCCGTCAA 854524 37 100.0 34 ..................................... GAATATCTCCAGCGATAGCCCCAGGGAATGGCAG 854453 37 100.0 48 ..................................... AAAGTCTGCCCGAAATTGTGCAAACTAAGGGGGTTGGAACCCGAAACT 854368 37 100.0 37 ..................................... TGGGCCGCCACGGTAGCGACGGTGAGGTCAACGCTCT 854294 37 100.0 37 ..................................... CGGAGCATGGCAGTGCGAATTCTCCGTCAACACTACT 854220 37 100.0 38 ..................................... AACCCGAGTCTCTACGCAACCCCTTGGCTACGCATAGG 854145 37 100.0 34 ..................................... CTTCTGGGGGTAGTTCCGCGATCGCGTTTTCCAA 854074 37 100.0 36 ..................................... GGCAAGTGCGAGATAATTGGGAAATGCTGCGGCGGA 854001 37 100.0 35 ..................................... AAAAGGCACTCCGGAAACGTCTATGTTCATGGCAC 853929 37 100.0 36 ..................................... GTAAACCGTGGGGTCAGTAATTTTCTTGGTCATAGG 853856 37 100.0 38 ..................................... GAAGGGCCGGTTTTTCCATTTTGAGTTCGCCCGGCCCC 853781 37 100.0 35 ..................................... TCTACTACCGGGACGCTAAAGTTGAGAGTTGCAGT 853709 37 100.0 36 ..................................... GAGGGGCTACGACCCCTTTTTTCTTGCTTATGACAC 853636 37 100.0 36 ..................................... CCCCAACATCAACCCCATACCGGGCAACGTAGGGAC 853563 37 100.0 44 ..................................... TTGCCTCCGCCGGTCGGCAAGACCGCCAAGACAGCGTTATGTCC 853482 37 100.0 35 ..................................... CTGGAGGCATTTCAAAAAAGAACATAGTTTTTCTG 853410 37 100.0 35 ..................................... TGGAGTCAACGACTTCAAAAGCGATCGCATCAACA 853338 37 100.0 36 ..................................... AAGCCCTTCTAACACCCCTGTAGTTCCCTTCTCAAC 853265 37 100.0 34 ..................................... CGGTGATTCGCGCAACCCACGCCGCCTTAGCCCC 853194 37 100.0 34 ..................................... GTATACTTCTGGCAGACAATCACCACCTGGGCGC 853123 37 100.0 35 ..................................... AAGATTTTCTAGCTTTAGAATTCGAATGCTTTAGA 853051 37 100.0 34 ..................................... CGATAGGCTTCAAGCATGACGGGGTCGCCGGTGA 852980 37 100.0 38 ..................................... TTGGGAGACGCGGGTAAGTCTGGCAAGATCCCGTAGCT 852905 37 100.0 34 ..................................... GATACCCGAGAAGACCGGCCAAGATGACCATCAA 852834 37 100.0 38 ..................................... TGTGCTACCCATACCGCCCCTTTGGGAGACTCGGACAC 852759 37 100.0 37 ..................................... ACTTCAGATACCGCCGCACTACTCAAAGGAATAGTCG 852685 37 100.0 37 ..................................... TGATGAAGGCACAACAGGATTAGAGGACAAAGACGCG 852611 37 97.3 38 .................................C... GGCGTCGGTTGTGTATACAAATTTCTTACCAAAATCGT 852536 37 100.0 37 ..................................... TCAGCCACCAGCACCGCAAAACGGAACAATGTTTTGT 852462 37 100.0 35 ..................................... CTCAAAGGAAAAGTTCCCCAACATCTGCCCCGCTT 852390 37 100.0 40 ..................................... GCCACCTTCCCCCGTCCAGGTGAAATACAGCAAATCGAAG 852313 37 100.0 39 ..................................... TTTGGCTCAATCAACTCCATGCCTGGCTGATAGATTTCA 852237 37 100.0 33 ..................................... CCCTAGCAGTGCGCCTATCGGGGCGTCGAAAAC 852167 37 100.0 36 ..................................... CAAACGCCAGCAGCCCCCCCTGCTGAGAGAAGCGCC 852094 37 100.0 41 ..................................... GTTGCTGCTGATTGTGACGCTTCTCTTCCTGCTGGTATTGG 852016 37 100.0 35 ..................................... AAAAAATAGAAAAGGCAAAGGAACTCGCTCGATTG 851944 37 100.0 42 ..................................... TTGCTTGAGAAGATTGATTTGCTGAATAAGATAAACCTTGCA 851865 37 100.0 38 ..................................... TTTGCTGTGGGAAAGCATCCCAAAATCTGCCACCACTC 851790 37 100.0 38 ..................................... ATTGATTGCACCAGGGCTTTGGCTCTCAATCGCTTCTA 851715 37 100.0 36 ..................................... AAGTCTGGTTGCACTCTCCAGTTGCTCCAGATTTTT 851642 37 100.0 36 ..................................... TGGGTTTGAGGGGTTGACTAATCCTCGTATTCAAGG 851569 37 97.3 38 ...........C......................... TGAGCAACACTAACTCCAAAGTTTCTGAATGCTGATTT 851494 37 100.0 36 ..................................... CATCCGTCGCCTCCTCAAAGTATTCCCCCCGCTGCA 851421 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 52 37 99.9 37 CTTGCAATTCCTCATAATCCCTTTTAGGGATTGAAAC # Left flank : CCGGTGGATATTTCGATTGAGGTGTTGGATCGGGTTGGGGTTCTCAATGATATTTTGTCCCGGTTGAAGGACAACAATATTAATGTGCATAGTGCCCAGGTGCGGACAACGCAGGGGAAACCGGCGATGATTGATTTGGGGATTGGGATTCGGGATCTCGGGCAGTTGGATCGCACCTTTGCGCAAATCCGCCAGATGAGTGATGTGTTGAATATGCGTCGTCTTCAAGAGGGACGTGTGTCGTAGGGAGTTTGCGCGAGGGGGGAGCTGTTTGAGCGAGTTTTGCAAAAAAATGGCTGAACCCCTCATGGGGACTGGGTTTTAGGGGTTGCAGTACATTGTAAGTGTCGCGCAAATTCGCGATGTCTGTCTGGGAAAGGATTTTGGAGGTTTTTGATATGCAAGGGCTTGCGTTTTTCGATCAATGGGTGTTAGAATCAGGGGGTCTCGCGCAAATGCACCTTGAAAACTGCATAGTGTCAGGGTTCTGGAAGGGGGCC # Right flank : TAACAAAAGTTCATAACCTTGCGTGCTAGGATTAAGGAAACCGTAGTTAATGGGACAGATGGCTAAGAAAAAAATTCCACCTCGAAACCCCAAGGGAATCAACCAATTCGCGGGAACCAAGAGCCGAAACAGTTTCAGCTTTAGGTTAGACGCCAAACTAGATGAAAAGGTGCGGGAATACTGTGCTGCGCACAACATTACCCAGACTCAGTTCTGGGAACAGCTTGCCGAAGATTTTTTCTCTATAGAATAAAATGAAGTTCCGTTAAATCAGCCGCCCCATTTAGGGCGGTTTTTTCTGCTTGCAATTCCTCAATTCCTCAGTGTCTCACCTCTGGGACATCGCGGGACTGACCCTCAGCACCCTAATAAATGACACAAGAACTAGGACAACACTTCGCGCTCAACACCCGATGCCTAAGAGGTGTCTCCCAAACCCCTGACTGTCGTCCTAACTGAAGCATCTAAAAAATCCCATTTTCCAGCCAGGGATTGAGGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTCCTCATAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 1498905-1497036 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML776472.1 Sodalinema gerasimenkoae IPPAS B-353 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1498904 35 100.0 38 ................................... TTGCAAGAAGAGGGTATAACATTCTTCTTGTTCGCAGT 1498831 35 100.0 38 ................................... AATTCTGGACCTACCACAACGGAGTACTGATACTCCTC 1498758 35 100.0 36 ................................... ATTGCGCTTGATCCGAAGAGGATGCCATTTACGAGG 1498687 35 100.0 33 ................................... AAGAATCTACTTCCTAATATGTTATAGAGCAAG 1498619 35 100.0 42 ................................... TTCGTTTAAGGAATCCGAGGCATCCAGTGCCTGAGAAAAGGT 1498542 35 100.0 39 ................................... TCTCTCCTCGGTCGCCTTGGGTAGGCGGAACTCCAAAGT 1498468 35 100.0 35 ................................... TTGAGGGCTGGGGAGCTACGAACGGTGCGGACTCG 1498398 35 100.0 34 ................................... GCTCTCATCGTCTTCCTCGCAATCTGGTTCTCCC 1498329 35 100.0 39 ................................... GAGTACCTGAATAGGCTCAGGGTCTTTTTGTGCGACGAG 1498255 35 100.0 37 ................................... GAGCGCTTCCGATGATGGAAGTACGAGCACCCGACAA 1498183 35 100.0 38 ................................... CCCTGGCATGTGCTTCCAAAAGCTGGGACTAATTACAG 1498110 35 100.0 42 ................................... AAGGCGTCTAGGCCTTGGAGGTTCGTAAGGCCTGCAGCTAAG 1498033 35 100.0 38 ................................... CTCCCAAGAATCGACGTTCTACACGATAGACACGAATG 1497960 35 100.0 38 ................................... AAACTGCCCATCGAGTCTCGTGGGCCTGAGCTACAACT 1497887 35 100.0 44 ................................... CCGACAGAGAGACCGACAGAGACACCGAGACTGATATTTTTCAA 1497808 35 100.0 35 ................................... TTGAATTTCGACTGACAACCAGCTCTCAGCTTCAT 1497738 35 100.0 39 ................................... CTCTAAGCCAAAACTTGATTTTCAAGCTCGGCTAGAAAT 1497664 35 100.0 40 ................................... CCGGAGGGGTTGCGTGGCTCTGCATAGTAAGTAATTACCG 1497589 35 100.0 42 ................................... CCTGGAATTTCCTCTAGGGAAGAAACTCCGAAATGTTGCAGG 1497512 35 100.0 36 ................................... CTAAGTTGTTTAGGGTGTGTTCGCATTGATAGAAGT 1497441 35 100.0 38 ................................... ATTAAGACGTTGTGCACGACGATCTGCTTCGCAGGCAG 1497368 35 100.0 40 ................................... CCGTTGCACGGCATCGGTGGTCGTCCATAATACGAGAAGT 1497293 35 100.0 38 ................................... CTTTTTGGAGAGTCTTTTGGCTCAAGTAAGACGCAATT 1497220 35 100.0 41 ................................... ATCTTCGAGACTTTCTCCCCATCCGACAACGTAGGCATCAA 1497144 35 100.0 39 ................................... TTTCGCCGTCTCGACGTTCTCGAGACCAGGACCAGACTA 1497070 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 26 35 100.0 38 CTCACCGCTTCTTCGGAAGCGGAATTAATGGAAAC # Left flank : TTCCCCGCTGACGTACGCGGTGCGGTGTATCTCCGTCCGGCGGGGTTGAAGCGTTTTTTGAGCGCTTGGCAACAGCGGTTACAAACCTCCGTGACTCATCCCCAAGTGGGTGAGCCGATTTTGTATGTGCGGGCGATCGAGGTTCAGGTGTGGGATTATGTGGCTTGTTTGGTGGGGGAGCGATCAGTCTACTGTCCGTTTGTTTGGAAAGTTTGAGGGTTAAAATTGAGGGGGGTGGTATTGACAGAAGGGATGGCTTTAGCCGTGACATTAGCTAAGCTTATTTTTTATCCTCAATCGATAACCGTCCGTGGGGGTCAGGCGATGGCTGAAACCCCTATTCTGTCGTGGAGTGCCACATATGTCTTGCAACATCTGGGGTTACGGGGGGTCAGACAGTTGGCTATTGCACCTCATTCTCAATTGCGTGGGGTCTTTCTTGACCCCCCCGGATCGATGGGGTTACAATCGGGGCGTGGAGCGGGTTCTATGAGCCTGCC # Right flank : AAAAGTGCGATTCGTTCGCTGGCTAATACATAACCAGCGGGGAGAAACCAACCTAAAACGTTGGCTCCTAACTGACTCTTTGATGCAAGTGAAAGTCTTGTCCTGTAAGAGACACAGTGACTCCCAACCTGGCCACACCGACTGAACTCGGAATTTCAGAGAGTGAAGCTGGCAACTAGTCTGCAATCAGAGCCAAAGCAGATAGGCACACTGGCGGTAAAGGGGAGACAGAACGGGTAAACTGGTTCTATAAAAGCGTCCTATCCATAAGTGGTAATCTGACCAAAAAAATACCAACTTCGACCGCGTAACCCTCACGGCATTTATTTTGTGATAGCCGTTATCTCTGAGGAGCGGTCGGGCGAAATGAACCGCCCTAACCTGTCAAAACAATCGAGAGTCGGAACGAATAAAAACGCTGACTGAGTTCAGGGAAAAGGTCGAACCTCTGATAGGCTGGTACCGTAGGGGCGAAAAATCCCCTCCTGGGAGGGGCTGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACCGCTTCTTCGGAAGCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 3 1507452-1505481 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML776472.1 Sodalinema gerasimenkoae IPPAS B-353 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1507451 35 100.0 35 ................................... ACGTTGACCCAAACTGCCCACTGCTCCAACTGCTC 1507381 35 100.0 36 ................................... AAGGTTCCGTGGGGTTTTGACATTGGGAATTATAAG 1507310 35 100.0 38 ................................... AGTATCTTGATAAACCACCTCACCATTTAAGGTGAGTT 1507237 35 100.0 36 ................................... AAAACTTTTTGAGAAGCTTTAAGAACGGTTCCTAAA 1507166 35 100.0 42 ................................... GAGATTTGGGGAATCGAACCCCTCTCGGTTGTGTATACGACC 1507089 35 100.0 36 ................................... TCTGCTAGATCTAATGCTTGGGGTGTGCTTTCGCTT 1507018 35 100.0 36 ................................... TCGCAAGTCACATCTTGATCCTGTGAGTCTCGCACA 1506947 35 100.0 37 ................................... ATTCACCCTTGTGAGCTGCACTCGGTGGGAGCCGAAT 1506875 35 100.0 37 ................................... CTGATGTCGTAGGTCCCCTCCTTCTCGTTGATTATTA 1506803 35 100.0 39 ................................... TGGGCAAAGAGGGGCTGGGAATGCCACGAATGATGGCAA 1506729 35 100.0 37 ................................... GAAAAGAAAAAGAATCTACTTCCTCTACTTCTTAATG 1506657 35 100.0 35 ................................... AGTAAGAGAGATATTAAAGAAGCTTCCGAGGCACG 1506587 35 100.0 39 ................................... TTCAGTGGTATTGTCGTGGTCCACCTCTATGCTATTTTC 1506513 35 100.0 41 ................................... AATGCTTTCGTTACCCAAGCATGTTTCGATTCGACTTAAAT 1506437 35 100.0 35 ................................... TTCACAATTGTTCGCTACAGCTTGAGAAGGGTTAA 1506367 35 100.0 37 ................................... TCCGTTGCCTTGTTCGGTAAAGCACAAACGTTGAGCT 1506295 35 100.0 37 ................................... ACTAGCAGTCACCAGCACAGAGCGGTTGCGGGACATG 1506223 35 100.0 36 ................................... ACTCTAACCAAGTTTTAACATCCCAACGGAAACCGT 1506152 35 100.0 38 ................................... TAAACTCATCTATAATTACATACCAGCCGGAGCCCTGT 1506079 35 100.0 39 ................................... ACTTGTAGTAACGCGGGTGATTTTTATTAGTCACTTGAG 1506005 35 100.0 35 ................................... GGGTGAAGTTAGGGTTTACCCACTCTCCTCCTTCG 1505935 35 100.0 35 ................................... GGGTGAAGTTAGGGTTTACCCACTCTCCTCCTTCG 1505865 35 100.0 35 ................................... GGGTGAAGTTAGGGTTTACCCACTCTCCTCCTTCG 1505795 35 100.0 35 ................................... GGGTGAAGTTAGGGTTTACCCACTCTCCTCCTTCG 1505725 35 100.0 35 ................................... GGGTGAAGTTAGGGTTTACCCACTCTCCTCCTTCG 1505655 35 100.0 35 ................................... GGGTGAAGTTAGGGTTTACCCACTCTCCTCCTTCG 1505585 35 100.0 35 ................................... GGGTGAAGTTAGGGTTTACCCACTCTCCTCCTTCG 1505515 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 28 35 100.0 37 CTCCCCGTTTCTTCGGAAACGGAATGAATGGAAAC # Left flank : TGTTGCATTTGGCGTTGCTGGATTTTTTGCTGGAGGAGTTCGAGACGTTACCGCCGTCGGTGCGCGATCGCATTTGTCCGGAGTTGTCTAGGTCACAATGACCTGTTTTTTGTTGGAGTCTCTTTCTATGCTGGTTTCCAGATTCATCCTTGGGTGAGTCATCGCTTCTGCGGAAGCGGAATGAATGGAAACCCCATTATCACGCGATCGTTCTGATACCGATCTGCTGTCCCCGGTTCGGCTTGCAACTGGGGACTTTTTTTATTTGTATAATTTGAACTGATGTTTTGCTGTCAAATGATAAGCGTCCACGGGGGTCAGGCGATGGCTGAAACCCCTATTATCTCGTGGAGTGCCACATATTTCTTGCTATATCTGGGTTTACGGGGGGTGAGATGGCCAGTTATTGGGTCTACTTCTCAATTGTGCGAGGTCTGTCTTGACCCCCCCGGATCGATGGGGTTAGAATGTGAGCGTGGAGCGGGTTCTATGAGCCTGCC # Right flank : GCCCGATTTGGTAAAACCAAATCGGGCGTTTCCTATTTGAATAGCCTCAAAAATCCTAAAGCTTTCCGCAGTGTCTTAACCCAAGCTAACCCCTTACAAACCCCGCTCCCGGAGGATACGTGCCTTCACCAGATCGGGCGTTTCCGAAAAATCCAGCAACGCATCCAATAACTCCGACGACACCCCGCGTTCCTTCGCAACCGCCACTACCAACGCCACCTGATTTGCAACAGCAAGCGGCGACTCAGAAATGAAGCTCACCCCACCTGCCTTGGGCGAGGTGGGGGTGTCGGTGCTAACCTGAGACGGTATGAGTCCACAGGTCACACAAACAAGCCCAGCTTCTAGGCGAACGCCGAGAACGTTGGCTCGAACGTTCCTCACTGTCCTTTCGGCGAGTGAGCTGAAGAATACCTCGGGCAGCAATATTAAGCGCCCCATTAAGGTCTGCATTGTATCGCTTGCCCGAGGAAAATTTAGCCAGAGCATAGTTTTTGGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCGTTTCTTCGGAAACGGAATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 4 4096705-4100394 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML776472.1 Sodalinema gerasimenkoae IPPAS B-353 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 4096705 37 100.0 33 ..................................... ATAAATGAGAGTGCGTTTAGCTACGCCGACAGT 4096775 37 100.0 35 ..................................... AACAGCTCCCGAATCTGCTCCGGCTGCCAATCCCA 4096847 37 100.0 38 ..................................... TCTAATCTGGATAGGCATGACCAGGTGCTTCTCTTGGG 4096922 37 100.0 35 ..................................... GCTTTGTACAAATCTTTGAAGGAATAGTACTTTGA 4096994 37 100.0 35 ..................................... TTCATCGTCGATGTTGATCTCTAAATCTTTTAATT 4097066 37 100.0 36 ..................................... CCCTATGCTGTAACACCTTCAAATCGATAGGAGCAC 4097139 37 100.0 35 ..................................... TTTGCCTACGCCCGTATCTGCTGATGGTTCCTCGG 4097211 37 100.0 38 ..................................... GGAAGTCGAAAATGAGCGATGTTGGTCCAAACAGAGCA 4097286 37 100.0 37 ..................................... GAACTAAAAAACGCGACAAAATCTTACAAGTGGCACG 4097360 37 100.0 37 ..................................... GAAAATGAGCGATGTTGGCAGAGCAAGATATCATCGA 4097434 37 100.0 35 ..................................... GATAGCTGCTGGAGTGTGCAGCGGTGGGGAACTGA 4097506 37 100.0 34 ..................................... TCACCTCTTGGGGCTTCGCCCCAGCACTCGCCAT 4097577 37 100.0 34 ..................................... GATCGTCCCTCCAAGTCTTGATACCGATAAACGA 4097648 37 100.0 36 ..................................... GCCTATGTTTCGGCTGAGGGGGTAGGTGAAATTTCA 4097721 37 100.0 36 ..................................... GCCAGAGAATTCAAATTCCATACGATTAGCATCGAT 4097794 37 100.0 42 ..................................... TGGAAGGAATCCTGATGGAAGGTAAAGCGAAAGCCGTCAAAG 4097873 37 100.0 37 ..................................... TGGTGGCTAGTACTGCACCCAGGAGTACAGACGCGAG 4097947 37 100.0 41 ..................................... TGCCGCCAAATCAGCGCGGGCAGGAGATTCGGAAAGTACAA 4098025 37 100.0 37 ..................................... TACTCCCATCGAATATAAGTTCCCAGAAGAATGCCCA 4098099 37 100.0 37 ..................................... CTTCGTTGGCAGCATTGATTCGCAATACCTCTTGCCC 4098173 37 97.3 34 ........................A............ CCCACGCCATAAAGGGAGATCGACAAAAATAGTG 4098244 37 100.0 35 ..................................... CATTACTAAAGGTATGGACGACTTCCCATTCCCCT 4098316 37 100.0 34 ..................................... CTTGAACCCCAAACAACCGAAGAAAACACCTATA 4098387 37 100.0 34 ..................................... AACTTTTTCGTGCCTATGCCTCTTTTGATAGGCT 4098458 37 100.0 43 ..................................... GCGTAGAAAGCAGAGACTAGAAGACGACGAGTGCAAGCGTTCA 4098538 37 100.0 34 ..................................... TATTCTGAACTCGCTTAAACGCCTCGTTGAACAT 4098609 37 100.0 46 ..................................... CTCCGCTCTCTTCTCTTTCGCATTTTGAGCTTGTCGCTCTCTATAA 4098692 37 100.0 40 ..................................... TTTTCTGTGGATATTTCCTCTGCGATCGCCACTGGTATTT 4098769 37 100.0 38 ..................................... CGGCCCCAAGAAAAAATCGCGCCGGCCGCCTTTGAGGA 4098844 37 100.0 35 ..................................... CTTTACGACCCCGATCAAGACTGGGTGGAAATCTT 4098916 37 100.0 34 ..................................... TTTCTACTTTGAAGCCCTCGTGTGGCTTATGGAT 4098987 37 100.0 35 ..................................... TGCTGGGCTGCGGTGGATCACCGGAATGTTGATCA 4099059 37 100.0 35 ..................................... GAAACATAAAGGATTAGAAGGATTATCGTAAAAAG 4099131 37 100.0 35 ..................................... TGAGGAGGCTTAGACTGTCGCCACATGGCCACCTC 4099203 37 100.0 37 ..................................... GAAGGATGAAGAAACAGAGTATATCCCTATCTGGGAA 4099277 37 100.0 35 ..................................... CTTGGATCAGCTTGAGGATACTTTGAAATAAATTC 4099349 37 100.0 38 ..................................... AGCTTCCGTGGAAACAATCGATTTTTGCCAACTTCTCC 4099424 37 100.0 35 ..................................... CTATTTCTTGGGAGCCTTTTCGTCCCTCTGTTATT 4099496 37 100.0 35 ..................................... TTTTCCGGGTATTTCTATTATTTCTTTCTCCCCGG 4099568 37 100.0 35 ..................................... GTCGCTCCCATGGGGATTTCAGCGGCTGCCCGGGT 4099640 37 100.0 35 ..................................... TGTTGCTGAATATATCCAGCTCGATATTTTCCACT 4099712 37 100.0 36 ..................................... CGCCTCCAGTCGCTCCAGCCGAGTCTCTGCCACGTT 4099785 37 100.0 36 ..................................... GAGGAAGATTCCGGCTTCATCCAAAATATAAACCCT 4099858 37 100.0 35 ..................................... CCTGGTCGCCTTTCTTTTCCTGCTATTGATTGTGA 4099930 37 100.0 38 ..................................... GCTGAAATTCAAAAATCCCATTAGATAATTGCTCCGAG 4100005 37 100.0 33 ..................................... CGCCGTCAAAGGTTCCAGCGGGGGCAAACTCCC 4100075 37 100.0 35 ..................................... ATCGACAACGGATAAATCCGGAGATGCCACAGCAA 4100147 37 100.0 35 ..................................... AGAAAGGCATAACATCTCAGGGGAGAAGAAATGTC 4100219 37 100.0 31 ..................................... AAACCCATACGTGAAGCGGGTTTCAGGGGAC 4100287 37 100.0 34 ..................................... AGTCAGAAGTGTAATAAAATCGCTCAGCCCTTTA 4100358 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 51 37 99.9 36 CTCGCAATCCCCTAAAATTCCTTTGAGGAATTGAAAC # Left flank : AGCGCCGGACGAAGATTCATAAGATTCTCAAGTCCTATGGTGAGTGGATGCAGTTCAGTGTCTTTGAGTGTGATTTGACGGAGATGCAGTATGCGCGCTTGCGGGGACGACTCGAACGCTTGATTCAGCCGGAGACGGACAATATCCTCTTCTATTTTCTCAGGGGCAAGCACCAGGGAACAGTGGAACGGATTGGTTGTCCCCCACCGATGGATACGACGGTCTTCTTTTGTTAAGGAATATTACGGTTTGCGCGAGAGGGTAGCTGTATGAACGAGGCACTACTGAAAATGGGCTGGATAGCTGATGGGGTCTGGGTTTCGGGCATTTCACGGCTAGGGGGGTCTCGCGCAAACTCTGTAATGCTTATGGGGTGGTCGTTTTGGGGTTTTCGATTCAGGGCTGAGGTTGCCCGTTTGGGGCGATCGGTGTTATTCTTGGGGGGTCTCGCGCAAATGAACCTTGAAAACCGCATAGTGTCAGGGTTCTGGAAGGGAGGC # Right flank : CACTGGCAGCCACCTCGAGGGCTTAAAGAACTGTGGGTTCACCTCGCAATCCCCTTGAGAGATTGAAATAAGTGGTTCTTCTTTTGCTATTTTTGCCTATATATATTCTCGCAATTCCCTTCTACTTTTTGAAATCTCATTTTAGAGAACTTACCCTCACAAAAAGTGTTGATTTCAACTCCTAAATAAGCCATTCTTAAAATCTTCCCGAAACGTGTTAAGCCTTTCTTGAAGCTGTTCAGTGAGACATTCGATGCGAGAGTCTTGACTGAGGCAAGGAGGTTGACTCGTTGCCACTTTCCGTAAAGCAATAGCCGCTCGGTTTTGTCTATTCTTATCTCTAATTTTACGAATAGGAGTTAGCAAGTCTAGCTTTTCTTTTGGATGATACAATCTAGATATATGACAAGGATTATAATCAATTCCAATAGATGCACACCAATCTTGCCATTTAAAAGGTAAAATCGTGGGGTTGGTGACAACCGGTATCCAAGGAACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAATCCCCTAAAATTCCTTTGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 5 4642701-4647186 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML776472.1 Sodalinema gerasimenkoae IPPAS B-353 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================= ================== 4642701 36 100.0 39 .................................... TAGCACATCTTTATATGAAACTCTTTCAATTATGCGCTC 4642776 36 100.0 39 .................................... TCTATCGAAGTAAATTCATCGGGACTGTCAGATAATGAC 4642851 36 100.0 36 .................................... ACCATGATTGGATCTCCTATTCTATATCAATAAAAA 4642923 36 100.0 37 .................................... GATGAATTGTATTATTTGTGCGGATTTGTTTAGGCGA 4642996 36 100.0 43 .................................... TTGATGAATTGAACGCTCATGATGATTGATGTTGTAGTTGTAG 4643075 36 100.0 37 .................................... CTTCTGGATTAGACCAGCGAGGATCTTCTTCAATAGT 4643148 36 100.0 38 .................................... GAGGGATATTGCCCGGTTGTTTCTCTCTTGAATGAGAG 4643222 36 100.0 35 .................................... ACGAGGTTTTTCCCCTCCCACTTCCGACCATTCTT 4643293 36 100.0 37 .................................... CTGCATGAGGGCCTTCGTGCCCTCCAGAGTTTCCTCC 4643366 36 100.0 39 .................................... ATGACCGTCTTGAAGTAGTACTCCGATTCCAGATCCACA 4643441 36 100.0 40 .................................... ACCAAAGGGGTGTTAGACAACCTCAAGAAAGACGTGGAGG 4643517 36 100.0 38 .................................... GTCTCTTCCATTATAGGAACTAAAGGATATTTTCATAG 4643591 36 100.0 57 .................................... AGTCCTCCCCATTGCTGGGGTTACAGAAGAAGTCGGGGAAGTCACCCCCGAAGAAGC 4643684 36 100.0 39 .................................... GCGTTTCCTTGGCGGAGGGTTTCGGTGAGGTTGCTTCCG 4643759 36 100.0 34 .................................... TACTGGTTGAAATCCTTGGAGAAGGCAGTATCTC 4643829 36 100.0 37 .................................... GTTAACTAAAGTCGCATTAGCTTCCCGATTGGCAGTT 4643902 36 100.0 34 .................................... TTGAGCTTGATGAACTACTTGGTTCAATTGCCGC 4643972 36 100.0 36 .................................... ATAGCTGACCAGTCTTTTCCTCTGAGCGAAACCGAA 4644044 36 100.0 35 .................................... GGGACTCCTTGGAGGAACCCTTGAAAGCGGATATG 4644115 36 100.0 35 .................................... AATTTCTTGTAGAGTCAGTTGACCCTTGGCCCCAT 4644186 36 100.0 40 .................................... TTCGAAAGGATGACCAGCCCACAAACCACAGTGGGCTGGC 4644262 36 100.0 41 .................................... ATACTAAAATTCCGACTAGAGGAAATACATTTAATTATTTC 4644339 36 100.0 40 .................................... AGTCACTGGGTTTGACTGGATACCAAACAAATCCCGTGGG 4644415 36 100.0 37 .................................... GATAACCCATTTTGGGAGGTAGGGCAAAATCTTGTGA 4644488 36 100.0 38 .................................... ACCCAGCTTCCGGGGCAGGAACTCATCTAGAATGGGAT 4644562 36 100.0 36 .................................... TCCTGGGGTTTAACCCACAGACCTTGGACATCGTAT 4644634 36 97.2 37 A................................... TTTAGAATCCGGGAGGATTTGCTCTTCCAGCTCTATT 4644707 36 100.0 36 .................................... TCCATGAGGGCGGGCTGTTGCCCATCCGCCATTTCC 4644779 36 100.0 36 .................................... TACTATTCTCGCGAATAGTTCTGAGTTGCTCATCGT 4644851 36 100.0 38 .................................... CGTGGTTGACCAATGGCGTAACGCCACGGCAAAAGAGG 4644925 36 100.0 37 .................................... GTGACCCCGAGGATTTGTTGTTGCAGTTGAATGGGTG 4644998 36 100.0 43 .................................... CCCGTTGCCAGGCATTGGGGAGCTCGTTGATGAAGGCCGGGAT 4645077 36 100.0 39 .................................... AATGCACAGACGGACAACGCCATGCTGCGCACTTCAATC 4645152 36 100.0 36 .................................... CCAAGCTGAGAATATGTGGTAAAATAAGGTCATAAA 4645224 36 100.0 37 .................................... CGGGAGGTCTCCCTCCAAGAGACCTGGGCCTGGGAGA 4645297 36 100.0 35 .................................... TACCATTCCGGCAACGGCATCCAGATTCGGGTCAG 4645368 36 100.0 39 .................................... CACAGAACGCGGGCACATCGATCCCGGTACTCTTCCAAT 4645443 36 100.0 37 .................................... TCCACCTCCGCGAAGAGAGTGAAAGCTACTGCGTTGG 4645516 36 100.0 36 .................................... CTGGGGTTTAACCCAGAGACCTTCTGTATCGTATTG 4645588 36 100.0 46 .................................... AATAAGTACTTAGTCACGCAACTAAGAGAAATCAAATATAGTACAC 4645670 36 100.0 39 .................................... CACCCGATCTTCCTGCCCGGGGGTTTCGATAATGATCTC 4645745 36 100.0 36 .................................... GGCATTGGTGTTGATGTTGGAATTAGCCATGGAAAA 4645817 36 97.2 35 ............................G....... TCGACGTCCATCGCTTCACCCCACTCCTGTATTAG 4645888 36 100.0 40 .................................... AGGATGTTCTCTAGCATCGTCTCTTTGTCATCACCATCCC 4645964 36 100.0 42 .................................... CATTGAGTACAATATGCACTCGACAAGGAGTTCAGTCAACAT 4646042 36 100.0 38 .................................... TACTTTTGCTTTTAGTAGCCATGATCTGATCTCCTAGC 4646116 36 100.0 38 .................................... CATCCGAAAGAGTTTGAACCAACGACTAGCACTAGGGC 4646190 36 100.0 37 .................................... TTGAAGTTTTCGTGAAGGCTTCATCAGCCTTCAAAAC 4646263 36 100.0 36 .................................... AGCAGTTGTTTAAATCCGAGCAGTTGTTTAAATCCG 4646335 36 100.0 38 .................................... TAGACCCTCGGTGCGGCATCATCTGTGCTTTGGGTGTG 4646409 36 100.0 40 .................................... TCACCTGAGCGTGTGTCAGGTACACGTAAGCCAAAGTCTG 4646485 36 100.0 36 .................................... ACGGCGGGCTGTTGCCCATCCGCCATTTCCTCTAAG 4646557 36 100.0 40 .................................... TTGAGATGAAGGAGCACTGCCTCCAGCTTCCGTAAGTCGA 4646633 36 100.0 41 .................................... AGCAACAACACGTTGGGTTTGTCCCCCTCCTTCGTTGCCGT 4646710 36 100.0 38 .................................... GGCCTGATAGACCATCGGACCTGCATTGCGGAAGTCCT 4646784 36 100.0 37 .................................... GTTATGGTAGACTAGACAGCCTTTATATTCCTCTGAT 4646857 36 100.0 38 .................................... GTTTCGCTGGCGGCGGCTCAGCTTGGCCACTCAGTAAA 4646931 36 97.2 36 .........................T.......... TTTACGGGGATGGGGACGGACGAATCGTCTGTGACT 4647003 36 94.4 38 .........................T.....C.... TCAGTCAACACGCCCAACCCGTAGACTAAAATATGGTT 4647077 36 94.4 38 .............T...........T.......... TCGCCGCGCGTCATTCCAAGTCGCACCCAACCAGACCC 4647151 36 91.7 0 ..........A.......C......T.......... | ========== ====== ====== ====== ==================================== ========================================================= ================== 61 36 99.5 38 GTCTCCACTCGCTGGAGATGTTATTAGATTGGAAAC # Left flank : CTATAGCCCCTATCAAATTCGCTAGGGTTGAGGAGAGTCATGTTTTTGTATTTGGTGGTGTACGATATCCCCAATAATAAGCGACGCCAAAAGGTTCATGATTTTTTGAAGGGTTATGGACAGCGTGTTCAATATTCGACCTTTGAATGTCTGTTACCTCGGGCGAAGTTTGTTGAGTTGCAGGACCGATTGCAGGGACGGGTGAATTTGGAGGAGGATAATATTCGCTTTTATCCTCTGTCTCGTCATACGTTGTTTCAGGTGCAGGTTTGGGGAGTTGGTCCTCCGGTGACGGAGTTTCCAGACTCTGTGATTATTTAGGGGCGAGGCTCGGACTGAAGCTCTGTAAGGACGGATTGAGGTTCTGAGCCTCGATGCGTTGCCGGGTCAGGGTTTGGGCGGTTTCGGGCTGGCTCGATAGGCGAGGCTGGGGAGGGAATTTCTTCAGCCTCGCACTCCCCCTCTGGAATGATGGCCCCATACGGGCTATAATCGGAGGG # Right flank : CAATAGTGCGATTCGTTCGCTGGCTAATACATAACCAGCGGGGAGAAATCAACCTAAAACGTTGGCTCCTAACTGACTCTTTGATGCAAGTGAAAGTCTTGCCCTGTAAGAGACACAGTGACTCCCAACCTGGCCACACCGACTGAACTCGGAATTTCAGAGAGTAGGGGCGAAAAATTTTTCGCCCCTACTCGGCCGCAATCAGAGCCAAAGCAGATAGGCACACTGGCGGTAAAGGGGAGACAGTACGGGTAAACGGGTTCTAGAAAAGCGTCCTATCCATAAGTGGTAATCTGAACAAAAATACCAACTTCGACCGCGTAACCCTCACGGCATTTATTTAGTGATAGCCGTTATCTCTGAGGAGCAGTCGGGCGAATTGAACCGCCCTAACCTGTCAAAATAATCGAGAGTCGGAATGAATAAAAACGCTGACTGAGTTCAGGAAAAAGGTCGAACCCCTGATAAGCTGGACGAGCAGCAGAAACCTCAGCAGCGGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTCGCTGGAGATGTTATTAGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 4688736-4685416 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML776472.1 Sodalinema gerasimenkoae IPPAS B-353 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 4688735 37 100.0 38 ..................................... ATGACTGTTCGTTCAGCCCGGAGGCCTTCTCGAATTGC 4688660 37 100.0 38 ..................................... CTCTGTAGAAAGCCTCTTCATTACCCTCTTCTTCGTAG 4688585 37 100.0 40 ..................................... GGGTACACTCTTACTGTAGAGGACTTCGTAGAGTGGGGCC 4688508 37 100.0 40 ..................................... TGGAGCTATGGGGACATCCCCATGGAGCGCCATATCCTGC 4688431 37 100.0 38 ..................................... CGGAGCTGGGGGCATACCCGCCCAGCTCATCTATGGTC 4688356 37 100.0 48 ..................................... TTGTCTACACGTTTAGAACGCCGACTCTTGCTCTGCAGCCACTGCTTG 4688271 37 100.0 39 ..................................... TGTCCATCTCCTGACGGCTGGGGCAACCCTCGAGCGATT 4688195 37 100.0 40 ..................................... AAAAGGTTGTATAACAACCTACATATTATAGAAAAAAAGG 4688118 37 100.0 41 ..................................... GAGGTGTTGGCACACCTCCTCAAGGGCCCAGACTTCCCGGC 4688040 37 100.0 38 ..................................... GGGAGTCCGGAAGCACCTGGAATGGTGCAGTAAATAGA 4687965 37 100.0 38 ..................................... CAGCCGAGCACAGATGGATAACATGTGGGCATTCGCCC 4687890 37 100.0 37 ..................................... GGTAGAGAGAGTTGGAGTTTAGCCCGGAGACCTTCTC 4687816 37 100.0 43 ..................................... TTAGAATTCTTCCTGGGATTGTGCTGCTTCAACAGCGGCCACT 4687736 37 100.0 38 ..................................... GAGGCCACCTCCGAACAGGAGCGTTGGTTCCTCGAAGA 4687661 37 100.0 36 ..................................... AATTCACGGTGGACGAAGTTACGCCAGGGAACTCGG 4687588 37 100.0 37 ..................................... TATCCCTAGGTACGATTTTATTTTCCTTCAGGGGACT 4687514 37 100.0 40 ..................................... TGTTATCCTCCGAGATGGGGCTTTGGTGGAGGTCGGCCTC 4687437 37 100.0 37 ..................................... AGAGGATCCTCTGGATGACTCTCGCTATCTCATTGAA 4687363 37 100.0 40 ..................................... TTCTGGACGACCAAGCCATTCTGCTCCGGGTCTTCGTAGC 4687286 37 100.0 39 ..................................... TCCCAAACTTCTTTGGGGACGGCCTTCTCCACAGCCTCG 4687210 37 100.0 39 ..................................... ATGCGCGTCTTCACGCCACTGAGCCCAGAAGTGGGCTTG 4687134 37 100.0 40 ..................................... GTTCTCCATCAGTCCTCGCCGTCGTTCTTCCTCCCCGTCA 4687057 37 100.0 39 ..................................... TCACCTCGTCCTGGAATACGTTCGCCAGGTAGGCCCGTC 4686981 37 100.0 37 ..................................... TTTCAAACCCTGCACCATCCCAATCAGCAGAAGACCA 4686907 37 100.0 46 ..................................... GCCGGACGCTATCGGGACTGGGACCGGGGAAACCTGTGCTTGTCAC 4686824 37 100.0 43 ..................................... AGAGCGTCATAGGGCCGTTTCCAATCAGAGTTATAAGCATCGC 4686744 37 100.0 36 ..................................... GCTGTTAAGTATACAGCTCTACTTCCCTCGTATCAA 4686671 37 100.0 42 ..................................... CCTGGAACGCACTAATAAACCAGGAAGCCGCCTTGACGAATT 4686592 37 100.0 36 ..................................... CTTCCAGAATAGAACTCAGGTTAGGGGCGCACCCGT 4686519 37 100.0 36 ..................................... ATAGAGTTGATCTGATTTAAGATCTTATTAAATTGA 4686446 37 100.0 39 ..................................... TTGGCCGTGAGCTCGGCCTCCACGTTCTCCAGGGTTTTG 4686370 37 100.0 40 ..................................... TCCCATTGCCGGATTGGCGGGGCTTGGTGAAGAGCCCTGA 4686293 37 100.0 35 ..................................... CAGTTCCCCAGACCGGCAGAACTGGCGGACATGCC 4686221 37 100.0 38 ..................................... AGACGTTTTTGACTGTGGTCTGATATCGTAGCCCTTCA 4686146 37 100.0 40 ..................................... TAACCCATAGACCTTTTTCATCATAGTGTTTGGTGTAGAA 4686069 37 100.0 41 ..................................... GATAACAGCGGGGCTCCGCTTCACGCCACCGTTGAAAGAGG 4685991 37 100.0 36 ..................................... TTGGACTTCAGGCGTAGTGTTCTGATAGTCGCTTAC 4685918 37 100.0 41 ..................................... GTACCCTCGCGGGCACTGTCAATGCGGTTCGCCATAAACAA 4685840 37 100.0 38 ..................................... TTAATAGCCCCAGTGTGAGAACAGTGGATTAGGTTGAA 4685765 37 100.0 40 ..................................... GCACCTCAGTCCCATATCGGATTTTTCCGTGGGCCAAGAT 4685688 37 100.0 45 ..................................... AGATGACAACAAATTCTCCGAAGAGAACATCCTTTGCGCTCCAGT 4685606 37 100.0 45 ..................................... GAGCTGACCTTTTTCGTACAGGAAGGCCGTAGGTCCGACCTTCAG 4685524 37 100.0 35 ..................................... CCTTTCAGACTCACTTCGGGCATATTGCGGAAGAG 4685452 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ================================================ ================== 44 37 99.9 39 GTCTTTTCCTATCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : AGCGGGTGCAGTATTCGGTGTTTGAATGTCCTCTGGAGGAGAAGCTGTTGGAGAAGTTATTGCATCAACGTTGGTTGGTGGTGTTGGAGATTCCTGAGGATAGTTTGCGGGTGTATCCGTTGGATGCGCGGGCGAAGGCGAAGACTCGGGTGTTTGGCTCGCCACCCCCCTATGAACCCCCGGATTTCTTGATTTTCTAGGGCTGAAATGCCCACGGGGTCAGGAATTGGGGCTTTGTGTCGAATTGTAACGATTTTCGGCACAGGCCGCGTTCCCTGAAAAACTGGGGTCTAGGTGCGACTAGAGGGCGTTTTTAGGTTTTCTTAAGGTTCTTAGGGCTTGACAGTTTCTGGGAAAGGCTGTAGCTTTAAGTAGTGCGCTAATTCTTCGCTTTCAAGCCGACTTTTCTCAACTCGAAGTGGTCGTGTAACGAAATGTTAAGGGTGTTCGCGCAAACGGACCTTGAAAACTCGACACAGCAATGGTTTCAAACCTATAGG # Right flank : ACGAGAGGAGTTTAACCCACTCCAACAAACAAGGTGCATTAGACAAACATCTAACGCACCTTGTTTTTTAACAATTGGCAATCATTATCGCGATAATGATTGCCCACTTATTCTATTGATCGTCCGAATCCTCATCCGGTTCCTCCGGTTCAACAATTCGCACGTCTACTTCCACATCTTTTACCCCGCGAATTTCCCGGGCTAACGTCTCGATCGAATCATGGTCTGCTTCGTTAGGAACCGTTCCCACCACAGTCACCACACCATCTTCAGCCTTAACCCCCAACTGACCTTGGGTAATATTCGCCTCCAACTTACTTCTGACCTCACTGGCGAGGTCACCATCTGAGCGGTCTTCGGGGTCGCCAAACGCATCCGTTCGTTCTTCCCGCGCCCGGATGTCACTATCGAGTTGAGCACGACGCGTATCACTTGTAGAATCGTCCTGAGTATCTTGAACTTGAGCCGGGTCATCGCTGGTTCCGTCCAGACTGCTCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTTCCTATCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 7 4790872-4793767 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML776472.1 Sodalinema gerasimenkoae IPPAS B-353 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 4790872 37 100.0 34 ..................................... AATAAAGTTAATGGCGGCACGGAAAGCGGATAGG 4790943 37 100.0 35 ..................................... TGCCCGGGTCATTTCTTGGTTCTCTTACTGCCCGC 4791015 37 100.0 34 ..................................... TCTCTGTCTCGCCCTTTTCTCCCTGCCGATCCAC 4791086 37 100.0 35 ..................................... TTGAGGCTGAAACCACGAAGATTCCCACGTTTATA 4791158 37 100.0 32 ..................................... AACAAATAGGCATCTGTTAACAGGTATAACCA 4791227 37 100.0 38 ..................................... AGAATGCCAACCCTCCCAAGATTCTCTGGCTTCATCTT 4791302 37 100.0 36 ..................................... GGCGAAGTTCCCCATACAGGAATAAAGCTGTGTTAA 4791375 37 100.0 37 ..................................... AACTATTCGTGGCGCCGCTGCACTTCTTCTGGTTGCA 4791449 37 100.0 34 ..................................... AAAGAAAGGACTTTGAGAATATCAGAAGCAACAC 4791520 37 100.0 42 ..................................... AGCCAGCAGTTGAGGGGGAACCTTTGCGAAGTTCCTAGTATT 4791599 37 100.0 35 ..................................... CTGAATTATTCTGATTTCTCTTGTCTCTTTTTTAC 4791671 37 100.0 33 ..................................... TGGGTTCCCTTTCCCTTCCACCCCATCTCACCT 4791741 37 100.0 38 ..................................... CTTCGGTACAAGCAATTTTCCGGTTTTCCCCATCGTAA 4791816 37 100.0 43 ..................................... ACCAAAAGAACAAGCGAAAGGGAACTTAAGAGATAAAAGGCGG 4791896 37 100.0 35 ..................................... GCTAGAAATTGTGGCTTGGCGATGGGCAGAAGCAC 4791968 37 100.0 41 ..................................... AGCCGCCGCAAGATTAACAAAATTGATAGCACCGCCGATGA 4792046 37 100.0 35 ..................................... AGCCGAATCTTGCCCAAATCGCGGAAAATCTGAAA 4792118 37 100.0 35 ..................................... ATCAACGAGCCATTCTCGCAGACGTAGGAATAAAC 4792190 37 100.0 37 ..................................... AACAGTATTCATGCCCTCCTCAGTTGTTCCGGCACCC 4792264 37 100.0 44 ..................................... TACGCTTGATTATCAATTGACCTAACTTGTTAGTTATGGTTAAA 4792345 37 100.0 35 ..................................... AATCACTATTTCGGTGAAGGCGGGCGACGGGGAAG 4792417 37 100.0 38 ..................................... ATCCGACATTTCATCGGTACGAAGGAAGCAATACCCAA 4792492 37 100.0 36 ..................................... TATCTAACGGGAGACAATGACCACAACTTGGCGGTG 4792565 37 100.0 32 ..................................... GTGGTCATAGTTGTTAATGGTGGAGTTGACAT 4792634 37 100.0 36 ..................................... GCTGAACGCATCTTTGACAGACCCACCAAGTCCACC 4792707 37 100.0 39 ..................................... TTCACAGTCTGCACCCATACACCAACAATCGGCGCCCGA 4792783 37 100.0 37 ..................................... ACAAAGCCAAACGGCTCATCCTCAAACTACCTATCCC 4792857 37 100.0 38 ..................................... AGGCCAAAATATGCGGTTATCGAGCAACCCCTGGGAGT 4792932 37 100.0 38 ..................................... AGGAGTTTCTATTAGCAGTAACGCCAAAGTCGATGCAG 4793007 37 100.0 35 ..................................... ACGAGGGCTGAATCTTTTGTTTGTGGCTTAAGCTT 4793079 37 100.0 38 ..................................... TTCCGACATTTCATCGGTACGAAGGAAGCAATACCCAA 4793154 37 100.0 36 ..................................... TATCTAACGGGAGACAATGACCACAACTTGGCGGTG 4793227 37 100.0 32 ..................................... GTGGTCATAGTTGTTAATGGTGGAGTTGACAT 4793296 37 100.0 36 ..................................... GCTGAACGCATCTTTGACAGACCCACCAAGTCCACC 4793369 37 100.0 39 ..................................... TTCACAGTCTGCACCCATACACCAACAATCGGCGCCCGA 4793445 37 100.0 37 ..................................... ACAAAGCCAAACGGCTCATCCTCAAACTACCTATCCC 4793519 37 100.0 38 ..................................... AGGAGTTTCTATTAGCAGTAACGCCAAAGTCGATGCAG 4793594 37 100.0 35 ..................................... ACGAGGGCTGAATCTTTTGTTTGTGGCTTAAGCTT 4793666 37 100.0 30 ..................................... GTCATACCGGTCGTGATGCCCATCAGCATA 4793733 35 86.5 0 T...-T.G..-.......................... | ========== ====== ====== ====== ===================================== ============================================ ================== 40 37 99.7 36 CCCGAAATCCACCAAAATCCCTTTTAGGGATTGAAAC # Left flank : CCGCGATCGCTGACGGTGACCTGCCAACCTTGCTGCTTCAGCAACCGGGCTGCAGCGAGTCCCGATTTTCCTAATCCAATAATGTGAGCGGTTGACATGCTTAATCCCTCCCTGACCGGAATTCATCTCATCTTGCCACATTTCTGGGAATGGGGAACAGGGAACCGTTGGACTGGAGGAGTTGAGTTGAGGAATGGGGACATTATTATATAGAGTGGATGGTCTAATTTTGTTAAGGAATGTTGCGATTTGCGCGAGGGGGGTGCTGTATGAGAGGGGGGATGCTGAAAATGGGTGGGATTCCTGATGGGGTCTGGGTTTCGGGCTTTCTATGGATCGGGGGGTCTCGCGCAAACTCTGTAATCCTTATAGGTTGGGCATTTCAGGGTTTTCGGATTTGGGCTGGGGTTGTGGATTTGGGGCGATCGGTGTTATTCTTGGGGGGTCCCGCGCAAATGGACCTTGAAAACTGCATAGCGTCAGGGTTCCAGATGGGGTCC # Right flank : CATGGGGCTGGATGTTACTATCCGGGATGAACTCGAAAATCACCAAAATCTCTCAAAATTCAGGACGCCAATTTAGGAAGGCAGAACCAATTTTGGTGATTTTATATAATAAATTTTATTATTAAATAGCAAAACAAGCGTGAGGCTGCGTGCAGTATTTGGATCCTTAAAAATAGCTCAATCTCCCCCCAAACGAATAAACTCCTATCCTCTATAACTGCCGAAGATGATACGTGATGATAAACAAAACCGTCAAATCACTAGCAAAATTACAAACCAGGTGCGTTGCGGCAGCTTCTAAATTGTCCTCTTAAGTCTCCATAGATTTGAGCCGCAACACACCCTACCGTAATGAATTAAGACTAGGAAATTTGGAGATAAGCATCAAAACTGGCGGACTTAATCGTGGCATGAAGACACCCGTTCAGGAGTCCAATCCCCAATCCGCAACTGAAATCCCGGTAACACATCTTCCCCCGACACATCCGCCGGGAAATCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGAAATCCACCAAAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //