Array 1 2607601-2605985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010279.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22425 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2607600 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 2607539 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 2607478 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 2607417 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 2607356 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 2607295 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 2607234 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 2607173 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 2607112 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 2607051 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 2606990 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 2606929 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 2606868 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 2606807 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 2606746 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 2606685 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 2606624 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 2606563 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 2606502 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 2606441 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 2606380 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 2606319 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 2606258 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 2606197 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 2606136 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 2606075 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 2606014 29 100.0 0 ............................. | A [2605987] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2625456-2624270 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010279.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22425 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2625455 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 2625394 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 2625333 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 2625272 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 2625211 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 2625150 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 2625089 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 2625028 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 2624967 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 2624906 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 2624845 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 2624784 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 2624723 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 2624662 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 2624601 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 2624540 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 2624479 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 2624418 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 2624357 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 2624297 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //