Array 1 211440-209776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRK010000004.1 Listeria booriae strain FSL L7-1529 NODE_4_length_211553_cov_27.225260, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 211439 30 100.0 35 .............................. GCGCTTGAATTAGTATTTAAGCCGTTCGATTTAAC 211374 30 100.0 37 .............................. ATATCATTTCTAATCATATTGATTACGATTCCCTCGG 211307 30 100.0 34 .............................. TTATTTATCTTTCTAATGTTTCTGCTTATTTTTA 211243 30 100.0 35 .............................. AATCCCCGTTAAATGTGCTTTGAAGCCTTCCATAT 211178 30 100.0 39 .............................. AAAGAAGTGAAAAAAGCTGGGGTAAGTTTACACATTGAA 211109 30 100.0 35 .............................. AATTTAGTAGTTTCTCCTCCGAATTCTTCTTTGCC 211044 30 100.0 36 .............................. TGTCGCGGCAGACGCGATTATATTCATCTTGCCCCC 210978 30 100.0 34 .............................. TTCATAAGGGTTACGAGGTGGATTATAAGACATG 210914 30 96.7 34 ..........C................... TTCCTCTACGTGTATTGTTAACATACGTATATAC 210850 30 100.0 34 .............................. TTTCGAAAATATCGCCTGGTATAATTCCCATGAT 210786 30 100.0 36 .............................. TAACACATGTTTTTGCTGGAAAAATTGTGTGTCCTA 210720 30 100.0 36 .............................. ATGGATTATTAACTGAGAATCAATCAAGACAGTTAG 210654 30 100.0 35 .............................. CCTTTAAAGTTACCTACAGTGTAAACTGTTGCTAC 210589 30 100.0 37 .............................. GCTTTCTTAACTGCTTCAATCAGGTAACTGTCATCAT 210522 30 100.0 33 .............................. TTCTCCAGCCGAGCTGGCAAGCCGACTGGCTAG 210459 30 100.0 35 .............................. GGAGTTTAGAAAATACGGTAATTATTGACGACACG 210394 30 100.0 37 .............................. TTTGTTGTCGCTTAATACCAAATGAAAAGGGGTGATT 210327 30 100.0 35 .............................. AAAATACCTGTGATAATACTCGGCAACCCTTTTTC 210262 30 100.0 35 .............................. AAGCCAGCTGAAAGAGCAAGGGTACGGTTTTCAAC 210197 30 100.0 36 .............................. CCTTTTGAATCAATTTTTTAGCTCGATTAATAGTTT 210131 30 100.0 34 .............................. GATGGAAGATTGGAAAAGTGGATCGGATCAGCAG 210067 30 100.0 37 .............................. TTCTGTAACTATCTGGATTAAAAACATACAAAGCATC 210000 30 100.0 35 .............................. GTTTATTATCTGCGAACACAATAGCACCAAATTTT 209935 30 100.0 34 .............................. TTGATCAAATCAATAGGTGACTCACGGACCTTGT 209871 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCA 209805 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 98.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TTCTTTTGGATTCTCTTAAGAATCGTGTGTCGCATTACATTTCTATTTCTTAATTACACACTTTTCTTGACAAACCCTCATCACCCGTTAACTTGTCTTCGTCCGCATTTTCC # Right flank : CAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTGCCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAACACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 57913-60191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRK010000007.1 Listeria booriae strain FSL L7-1529 NODE_7_length_155875_cov_26.754169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 57913 30 100.0 37 .............................. TTCTTAGCGCGGCAACTGCGGCAGGAAATACCGTTGA 57980 30 100.0 37 .............................. CTTTCTAGGTCGATATTCCAATAAAGAAGACGCCATC 58047 30 100.0 34 .............................. TTAATAATAAAGCTAGAGTGATACAAAGATTCTT 58111 30 100.0 36 .............................. TTCGGTGTATCGCTTGCTCGAATAGTAACATTCACA 58177 30 100.0 36 .............................. TCTTTGTACTCGATAGTAAGTTAACTCGTCGATTTT 58243 30 100.0 36 .............................. CACCCTTGATAATGATGGAAATTATGAGGAATTAAC 58309 30 100.0 37 .............................. TACACATTATGTTCACATTCTTTAATAATGTACTGCT 58376 30 100.0 37 .............................. TTCCCACTTTCATCAATTACCCATTCATCCTCATAGA 58443 30 100.0 36 .............................. ACGACTATTACAGCAGAAAAAGCTAAGATAACGCTT 58509 30 100.0 35 .............................. TTCATAAGGGTTACGAGGTGGATTATAAGACATGA 58574 30 93.3 34 AG............................ CGGTATAGTCCGTATTCCATTAGTTTTCTAAATT 58638 30 100.0 37 .............................. TTTCTCTGCTTGCTACAGCTACAGTTAGTACACTGTT 58705 30 100.0 36 .............................. TCGATTTCCGTGCGTACTCGTAAAGGCACACGCACA 58771 30 100.0 37 .............................. CATTATTACCTTGATTATTAAATTGATTCGTTAATTC 58838 30 100.0 37 .............................. TGCCACTAAGATTAATTGAATTGTCATTCGCTTCTGC 58905 30 100.0 40 .............................. CAACCAGCTCGAAAAAGAAATCGCAAGCAAAATGGCGGAA 58975 30 100.0 37 .............................. CATTGAGGGCAATCAACTTCAATGTAAACTGGTTGTA 59042 30 100.0 37 .............................. AGATAAGTTTTAAATATATGAAGGAGCAACGATTTTT 59109 30 100.0 35 .............................. CCCTGTAGTTCATTTAAAACGCCAGAATCTATTTT 59174 30 100.0 36 .............................. ATCAAAAAAGGTATTGACTACTTCCCTTTAGATGTT 59240 30 100.0 36 .............................. CGATTATCCCTCGTAGGTGAGGATTACCCGAAACTC 59306 30 100.0 36 .............................. GATACTGTAGCTGGAGCCCCTAAAACAAATAACGGA 59372 30 100.0 34 .............................. ACGTGAGGCTTTATTTAAAAGATTTTTGGCTCTT 59436 30 100.0 37 .............................. TGATAAGTGCATAATATTCGCCTGTGAACTCATAAAA 59503 30 100.0 35 .............................. TGCCGTGCGTCACATTAAGTTTTAGCTTTAACATG 59568 30 100.0 36 .............................. CGCGCAACAAGTCGAAAATCTGGTCGCGACTGGCTT 59634 30 100.0 36 .............................. GCGTAATTCTGAAAGAATGATGATTGATGCTCTGAT 59700 30 100.0 36 .............................. GAAGAAGCGGAAACAGAGGCGCCAGCTAAAAAAGCA 59766 30 100.0 36 .............................. TTTCAATAAAATATTCTATTTGCACACACAGCTTTC 59832 30 100.0 38 .............................. AAACCTGTGACAGTAACATTAATAACAGTAGTGACGCT 59900 30 100.0 36 .............................. TCGTTAGCATAAAAGACAAACGCCCAGAGCTTAACA 59966 30 100.0 36 .............................. AAACAAACGAAATACCAATACTACGAAGTAAATGAC 60032 30 100.0 36 .............................. TCGAGTACAGCGAAAGCTACTAAAACAGAGGTCATC 60098 30 100.0 35 .............................. TGGTTTGGAATTCCACCATCTTTTATGAATGCCAT 60163 29 86.7 0 .................A..-...C..G.. | ========== ====== ====== ====== ============================== ======================================== ================== 35 30 99.4 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAGGTCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAAAGAGGGGATGGTTGATAAGTGGTGTTTGGAAAGCGAGGACCAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTATGCAAGGGATTGAGTCTATTTTCGAAGCTCGGGTTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATCGGGTACCT # Right flank : TTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCCAGTATGGTGCGGAATTTGGTGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAACCTTGCGAAACAAATTGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 22525-22683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRK010000025.1 Listeria booriae strain FSL L7-1529 NODE_25_length_30751_cov_31.294680, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 22525 27 100.0 39 ........................... TCGTGTCACGCTCTGTTTTCACAAGATTCGGATTTAGAG 22591 27 100.0 39 ........................... CATTTTCATCATCCGTATTCTCCTCTTTCGGATTTAGAG 22657 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 100.0 40 TACCTCAAAACAGAAGAGGACTAAAAC # Left flank : ATATTTGCCGTTATCGACATTTTATTATATAATGTGATGAATAGTTTAGCCGATATCGGCAATAATATTTATAATGCAATTATATACATCGAAAGGGGTATTGGATATTGGAGAAATTTAATAAAGACTTTAGAGAATTTTGTTTAAATCGAGTAGAACAAACTTTGAATGAAGATCAACTGAATGATCCGTTTGTAGATTTACGAAAACGTCAGATGGATGTCGTAGAAAAACTGGAGGCATTTGAAAATAAAGATTTCCAAAAACATTTAGATGAGTTATTTATATGTGAGGTTGAGGCACGAGTATTAATTTATATGAAGGGTTTTCAAGAAGAAAGCTATTTTATTGGCGGGAGATAATTGGTTGAGTTTGAGAGATGGCTAATGAGCTGTCTCTTAATTTATGAAAAAATAATTATGCTTTGGTAATCTGTCAAGATGCAGCCCCGTTAATAATCTTGTATAGTTATGTTGTTACAAGCGAATAGGCGGGTATAT # Right flank : CCTCTGCTGTGGATAAATGAGGAATAATATTTTCAATTGTAATGGCTGTGAAGAGAAAAAATCAGCGCACAACAAAGAAGATGACAAACAAAATCCTCGCCATCTTCTTAAAATTATTTGCCACAAATTTGCCACACAGCCAATATTATAAGCATTGAAACGAGCACCACGAGTGTATCTCGCCCAACCATCAGAATCCCCGTTTCTCCGCTTAGAAAGAACGGAAAACACTGTAGATCGCTGTGTAAGATGCGGTTTATGGTGTTTTTTTGTATGTTAAATATGGTATGATAAAAGAAGAAATTAACAGTAGGGAGGTGTCATACATTTGGCAAAGAAGATACAATTACCAAGCGGTCGATTAGCGGAACACGCCAATGTGATTCAAGCAACGACGAATACATTAAAGTTACAACCTAAGCCGAACGTGTCTTATTCCACAGGTAGCGCACAACAACTGGTGGAAAGTGCTATGGCATTCGCACAAATGACAACAAGCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTCAAAACAGAAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 26039-25738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRK010000025.1 Listeria booriae strain FSL L7-1529 NODE_25_length_30751_cov_31.294680, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26038 36 100.0 30 .................................... ACAGGCGAAAACTTTACCTATGACGACGTT 25972 36 100.0 30 .................................... TATCGGTTGTGACCTAGAAGTTTTTCAAGG 25906 36 100.0 30 .................................... TCATTTGGTAATACTGTAGCAAAAATGATA 25840 36 94.4 30 ..........C...C..................... AAATTCGACAAAAAGCTAGAAAAAGCGATA 25774 36 83.3 0 ................A.........TG.A..C..A | A [25743] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.5 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACCTTCATACGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAGG # Right flank : TCTATTTTACTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTTCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAACGATTTTGAAAGAAATGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACAACACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATATTAGAGGCACTTTCCCCAGTGTTCACACCATATAGCACATC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 29800-29500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRK010000025.1 Listeria booriae strain FSL L7-1529 NODE_25_length_30751_cov_31.294680, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29799 36 100.0 30 .................................... AAGGTGCTGTGGAGGAATTAAGCGGTGCAG 29733 36 100.0 30 .................................... CTTAGATAACGGGCTGTATAAAATCGACTG 29667 36 100.0 30 .................................... TTATCCAGGGATTGTTAGAAACATACGACT 29601 36 97.2 30 ................A................... CTAATGAGTATGCAGATGAAAAAGACCTAG 29535 36 86.1 0 ..............T............T.T.T...A | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCTAAACTAAAACAGAACACACCACTGTTATAGCAAGAAAATACTGCGTCATTTACTACTGATTGGATGAGCATCCTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTGTCCCACTTATCCACAGTAGAG # Right flank : GTAACATCATATTGCGTCCTCTTATCCTATCCAATTTCGTTTTGAAATTGACTACAATGCCCTATGTCAGATTTCTAAAAGTCTCTTCACTATACCACAATACTCTTCCGAAACCTGATTTGTTTCTATATAGCTATCATGGAATTTTTTTTCACCTAGATGTCTCAGTTTTTTTGGCTTTAAGCTTTTTATCACCAACCTATGTTTATTTTCTTTCAAGTTAGCAAATTCAACACTCATACCATGCCTATCTAAAATATCGATTAATGACTTGGAAACGGCATTCTTTAATTTACGATCATACTCAAAAATTTCTCTTAACCGCTCAGACAAATAGAGCAATGTGTAATCAGATTTGGGTGATAAATAATTTAGATGTGCTATACGATTCCTTGCTTCTTTCTCAGACACAAACAGTTCTTCTTTTTTCATGAATATATCCAACTTTTTAATACTTTTTAGTCTATTATCGCCCCAATATTTCACTCTCTCAGTAATTC # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 105049-105212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRK010000013.1 Listeria booriae strain FSL L7-1529 NODE_13_length_105257_cov_31.776336, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 105049 30 100.0 36 .............................. AGTGCTACCGCATGCTAATGTTCGTTATGAATTGAT 105115 30 100.0 38 .............................. TCAAAAATGGATATGGCCAAGTGGTGTACGATGTGGCG 105183 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 38 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TTTGTTGTCGCTTAATACCAAATGAAAAGGGGTGATTGTTTTTAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 27859-28811 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRK010000016.1 Listeria booriae strain FSL L7-1529 NODE_16_length_88778_cov_25.971748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 27859 30 100.0 35 .............................. AAATTAACAGGGATGTTTATTCGAAATGACATTAC 27924 30 100.0 35 .............................. TATGATAACTTATTGACATTCTCATACACAGATTA 27989 30 100.0 37 .............................. TTTCTCGGCTGTGCCGTACGACGATTTCTGCACGTCG 28056 30 100.0 37 .............................. TTGGCATAAATTCAAAGCATTATTAACATCGCTTAGC 28123 30 100.0 37 .............................. TTGTTATCTTTTGTAGCACGATATTTAGCACGTTGTT 28190 30 100.0 36 .............................. GAACTTCGCATTCTTGGTCACCAATTTCTTGTGTCG 28256 30 96.7 36 A............................. TTGTATAGCGTTTCGCTTTATACTTATACTGCCGTT 28322 30 100.0 36 .............................. GATGCTAGTACCTTTCTAACGGGTTCCGTGATGGGC 28388 30 100.0 35 .............................. TTATATCTTTCCTTTCTATAGCGTCATACACATAT 28453 30 100.0 35 .............................. CGTACTGTTTAATATGGAGAATAAAGCCTTATCAA 28518 30 100.0 36 .............................. TTGTCAACACTTGAGACAGCCAAGAGAGCAGATATG 28584 30 100.0 36 .............................. TGAACTTTAGGAGAAACGTACTTAAAAGGTTTCATC 28650 30 93.3 36 ............GT................ CGGGCATACTTAGCCAAGAAAACTGAAAAGTATATG 28716 30 90.0 36 ............G...C...A......... TGATAGCCCGCTGGATTTTTTGTTTCTTTCACGCTA 28782 30 70.0 0 ........A......A.TC.A...C..GTA | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 96.7 36 GTTTTTATCTAAACATTGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCCGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTTGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCATAGGGAGAGAAAGGGGGAGGATGGTTTTCGAGAGGTATAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : AGCGTATCGGCAATTTCACACAACCCATCTACAAAAATAAAAAAATCTGTCATCCTATCAAAATAAAAAGAGGGACATCGACAGATTTTTTTATGCAATAATACATTACCCGTATCTCTCCAAACAACCGTCTAAAAAAGGTATTACAACAATGGAGCTAAAAATATAGTCGCCAGCCCGTCCACAATATCATCTTCTGTATAGCCACTGACTGTCAGTTGACGAATTAAAAGTGGATTCAGCACAGCTGCAATGGTCGTGCTCCAAAAAAATGTATCCACATCTGTATCCACTTGCTCAAAAATGGGCTGGATGAGTTCTTGTACAATGACAATAGGTGGTGGGGGGCTATTAGGCACTTGATTATTGTTAACCAGATTTCCATCTATATGAGTAAGCATCACCTCTAACCAACTACTATGAGAAGAGATAAGAGAAACCAAGGCTCGAATTATAAAAACGCCTTTATCGTAACTTGTAGCTTCTTTATTATCATTCAT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAACATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 32363-32659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRK010000016.1 Listeria booriae strain FSL L7-1529 NODE_16_length_88778_cov_25.971748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 32363 31 100.0 34 ............................... AGAAGAAACAATCCCCCTCTGCAAAAAGTACGAT 32428 31 100.0 37 ............................... CATATCCCTGTGATTCTAGATACTCTACATATTTTTG 32496 31 100.0 36 ............................... TCCGAGTTTTCGAGCTCTTTTGTCATTTCCCGGATG 32563 31 96.8 35 C.............................. GATAATATATAAAGAAATCATTGCTTGGTCAGAAC 32629 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 99.4 36 AGTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GCAAAAATGATCAGTTTCTTAAGATTAAATCGTAAACTAAATCCATGACGACTATTCCAAAATGCATCCAATAATATTAAAAATAGGAAGCATTTTAGCATGGGAAGCCTGATTTGAAGTGCTAGATAAAGAACGCCTCATTCAGAAAACAACATTCGGCGCAAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAATACGAAAAGAAAATAATCCCTGCGAATAGCGCGATGAGTGTGCAAGATTGGAAGAACAAGATAATTTCTACAGAAAACCTTGATTCATAATAACGCGGAAAAAAATCTGTCGACCTCCAGTAGTGCAAAATGATGGGGGCATCGACAGATTTTTGTTATGTATTGGGACTAAAGAGTTTAAGCCTATTTTCGAAGTTCAGATTGTAAGGTTTGAGAGTGGAAATTTAGGATTTGGCTGCCTGTCGACAGATTCGGGTGTTTGAGGTATGATGGAAGTAAGCGTTGATGGGGTACC # Right flank : TTAAGTCAATTAATAACCATGATGTAGACGCCTAATCGTTTTTACCTAAGAAATATGCGAACATAGCCCATAGGCGATTATCTACACATTTCCTGAATATATGAGGCTAGCTTAAGTATTAAAAATAAAAGCCGATACTTAAAGTACCAGCCTCATAAATTTAATGTATTCATTTAAGAAAAATGTCTTTGTGGAATTCCAGTTTGTTTATTTAATAATTTTGTTCGTTTGCTATCTTTATAAACATACAAATCATTCCTATACTGGTGATTGTTGGCGTATTGTTTGATTGTAATGTAAGCGGTCTTATTTTTAAATTCGCTTATAATACCATACACAGAAAATGCCGCGGCTATCCAACCAAGACCTGGAACTAATCCTAGTCCGATCAACAGCTGCACTTGCCTTGCTAACTTTTGTCATCGTAGCTGTAACCTTTCTGCTTGTTACTAGTTTCATTGAGCTATTTGAACTTGCTCTTAATAATAGGGGAGTTGAGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 36489-37703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRK010000016.1 Listeria booriae strain FSL L7-1529 NODE_16_length_88778_cov_25.971748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 36489 30 100.0 34 .............................. TGATGCAAGACCGTAACCTACGCGCTCCATTATT 36553 30 100.0 34 .............................. GTAGCTGGATCTTTAGGCTCAGGGATAACAGACA 36617 30 100.0 38 .............................. TGAATTTATAAAACACTTCAAATGAGTAGTTGCCTGGC 36685 30 100.0 35 .............................. CCAGTTTTGGAACCAACAGGTTCCCTTGTGTTTGA 36750 30 100.0 35 .............................. ACCGTTTTTTCCTTATCCGATGTTATGGAGTCATC 36815 30 100.0 38 .............................. TGCAGACAAGACTGTCGGCTTCGAGACCGAAGCGCCGA 36883 30 100.0 38 .............................. CGGTTTGTCGGTGAGTATATAGAAAATTGTACTAAAAA 36951 30 100.0 36 .............................. TTGTTTGCTACTAATTCGTAAATGTCGCGTGGGTCT 37017 30 100.0 34 .............................. TTAATTTTAACAATATTACTATCCATTTTATTTT 37081 30 100.0 36 .............................. CGTAGTATTTTTAGTAAGTCCGTTTTTATTTGCTCT 37147 30 100.0 35 .............................. TTTCTTGACTGATCCAGCAACTCTTGTGCTGCTCT 37212 30 100.0 35 .............................. AGAATTCAAAGATTTTTATACGGCGAATCGTATGT 37277 30 100.0 36 .............................. GTCATTCTCCAAGCAGGTATCGATATTTTGTTAGCG 37343 30 100.0 34 .............................. GTGAGAATTTGGGGGATTTGGATGGCGTGGAAAG 37407 30 100.0 36 .............................. TAGATATACCATTAAAGTCAAAATTATTTTTTATAA 37473 30 100.0 40 .............................. TCAGGAACACTTGCAGAATATGCAGACGGCGCTGGCTAAA 37543 30 100.0 36 .............................. AAAAGAAGACACAAACTGACGACACAAAGGACTAAG 37609 30 100.0 35 .............................. CAAGTTAAAAAATTCAGTTATACCGTGGTCGATGA 37674 30 90.0 0 TG.....................A...... | Deletion [37725] ========== ====== ====== ====== ============================== ======================================== ================== 19 30 99.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTTGAAAAGCTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TAAGAACGACAACAATGACAATGTTTTTATCCAATCCCAATGTAAATATGAAACTCCCCCATAAACATAACATCCCCCAACCCAATAAACTATAAGCAACCACTAAACTACCCAAAGTCTATAAGTGTTTTTTGTCATGCTCAAAAAACCCATAGACTTGCTTACTGTAAATGAAACAAATAGGAAGTATAGAATATATTTCATACATTTAAAAAATATATTGGTGAAAAACATTTACAAAAATAAAATAATAGTGTAAAATTCTTTCTGAAAGGAGCGTTATGATGAATATAAATACACTAAAAGGACAATTGATAGTATCTTGCCAAGCTTTAGAAGGTGAACCTTTGCACAGTTCCATGATTATGGCGCGAATGGCGCTTGCTGCTAAAGAAGGTGGTGCTAAAGGAATTCGAGCAAATTCTCCGGAAGACATTCAAGCAATCAAAGGACTAGTGGATTTACCTATCATTGGCATTTGGAAACGCGATTATGAAGGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //