Array 1 1-748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSC010000015.1 Pectobacterium brasiliense strain CFBP5381 Pectobacterium_brasiliense_CFBP5381_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ GATTGCATCAGCAGCTTTCGCTTGACCGTTCT 61 28 100.0 32 ............................ GAATGATGACCTCGGCGGTAGTGTAACGTTCG 121 28 100.0 32 ............................ GCGTTTCTTCGGTGATGGCGGGATGAATGTTT 181 28 92.9 32 ...........G.T.............. TAAAAGAAAAGCGCGAAATAATCGCGTTATGG 241 28 92.9 32 ...........T.T.............. AGTTTTCTGAACGCTCATCAGCAGACACATCA 301 28 92.9 32 ...........T.T.............. TTACGCGATATCCGCGCCAGCTCGGTTTCTCC 361 28 92.9 32 ...........T.T.............. AAAGAGCTATTTATGGGTGCGCAAACCGCTGA 421 28 96.4 32 .............T.............. TGAACGGACAATGCAGGGAGATCGGCACCTGC 481 28 96.4 32 .............T.............. GGACAACTGGAGCATTGCGGCGCGGCAGTGGT 541 28 89.3 32 ...........GTT.............. TTAGGGTTGTAGAATCCCCTGAGCCAGTGATT 601 28 100.0 32 ............................ TCTGACGTGCATGCGTTCACAAATTCGGCCAT 661 28 92.9 32 ...........A.T.............. AAGAGATACAAGGATGTTGCGGCGGTATTACC 721 28 78.6 0 ...........T........T...TCCC | ========== ====== ====== ====== ============================ ================================ ================== 13 28 94.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : CCTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCATCGTTAAATAACGTATTTCTGATTCCCCTTTCTCGTAACATTTTTAAGTAATGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGACCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 7103-6655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSC010000015.1 Pectobacterium brasiliense strain CFBP5381 Pectobacterium_brasiliense_CFBP5381_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7102 28 100.0 32 ............................ ACTCTGTCCACTGATTTACATCTCCGTTTCTC 7042 28 100.0 32 ............................ GCTTACCGTGATATCGCGGGAGTCTGGACGAT 6982 28 100.0 32 ............................ AGCAAAAATCACTCTGGCGTACGGTAGTGAAA 6922 28 100.0 32 ............................ ATCCGGCCTTATGAGCAGTGCGGAGGGCAGAA 6862 28 100.0 32 ............................ AGGTGAAGAGGTTTTCTGTCGCTGTTATGTGA 6802 28 100.0 32 ............................ GGGAAAATCGCGCCTTGAGTTTTACGACGCAC 6742 28 100.0 32 ............................ AGTCGCTCAACGTAAGCCCCGCGATTTTCTCA 6682 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGCTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGACACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAAAGCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 202745-201939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSC010000003.1 Pectobacterium brasiliense strain CFBP5381 Pectobacterium_brasiliense_CFBP5381_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 202744 28 100.0 32 ............................ TGCGCGATGTCCTGCGCACTCTGTCCGGGCTG 202684 28 100.0 32 ............................ GCCCCTGTCAACCAAATATGAGGCCGCCATTT 202624 28 100.0 33 ............................ GTTAAAATTTCCCCAAGCGATGTTGCAGGACAT 202563 28 100.0 32 ............................ TGGCCAATGCTCAACCCCATTTGCTGATACGT 202503 28 100.0 32 ............................ ATATCAGCAATGAACGATGCTGCAAACGATTT 202443 28 92.9 32 ...........C.....C.......... CGCGCTAATAGCATTGCCGCTAATATCACTGT 202383 28 92.9 32 ...T.............C.......... CTTGTTTCTTTTACAGTATGTGAAAGGTAATT 202323 28 96.4 32 .................C.......... AAAGTAGTCGGTGGTCGCCAAGTCATCATCGC 202263 28 92.9 29 ...........C.....C.......... ACGGTTCGCTACGCCGCCGCCGGTGCATT 202206 28 92.9 32 .................C.T........ CGAGCAACACAGTATTCATCGCTGTGGAAAAT 202146 28 92.9 32 ...........C.....C.......... CGCTCGCGCACCTGGCGTCAAGACCCCGATCT 202086 28 92.9 32 .........T.......C.......... GTCCTGCCAAGCCATAACGGGCTTTCCGGCCA 202026 28 92.9 32 ...........C.....C.......... ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 201966 28 96.4 0 .......A.................... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 95.9 32 GTTCACTGCCGTATAGGTAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAGAAAACCATATTCTCTTTAACAATCTGGTGGTTATCGAAAAAATTCAACT # Right flank : ATGACTGATTTATTGAGCAAAGAAAGGATGGAGTTCACTGCCGTGCAGGCAGTTCGGCGATTATCGGGATGCGTCGCTGGTGCGACGCATTTTTGAGGACTACTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATAGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCACTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTATGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGGGCGATAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //