Array 1 165027-163826 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 165026 37 97.3 35 ....................................A ATTAATCTCTGGGATTTGCCCATAGCAACAACCTA 164954 37 97.3 36 ....................................A CCTTTTATCTTTGTTTTTGTTAGCTTAGTGCGGTGA 164881 37 97.3 37 ....................................A TAGGAAATATTATTTGCGGATAAGAGCATGTGACGAG 164807 37 97.3 36 ....................................A TTGCTGGGATTTGACTGTGGTTGACAAGCCAGTCAG 164734 37 100.0 33 ..................................... GCAAGGGTTTGGCTTCGTTGGCGGCTTCTTTGC 164664 37 100.0 33 ..................................... TAAATAGCTTTAACCAATCCACTTTAATATCTC 164594 37 100.0 33 ..................................... TCTTCCACATAGATTATAGATTCATCGTTAATA 164524 37 100.0 38 ..................................... TCATAACGATCAGACTTAATAAAGGTATCCTCCTGTAA 164449 37 100.0 37 ..................................... TACCCTTGGTTTCCACCTGCTTCCATAGATCCAGGAA 164375 37 100.0 37 ..................................... TCGCCGTGACTGTATCCATTTCTGGATACAGGATTGA 164301 37 100.0 34 ..................................... CATGCAGTTCGTACTCACCGTAATTTTTCCAGCT 164230 37 100.0 37 ..................................... AAAGCATTTGGGAAAGCTTCCATGAAATCTTTATAGA 164156 37 100.0 41 ..................................... CCCAGCGCACCTGATTAATCAAGGCTTCAATCGCCCCCTCG 164078 37 100.0 35 ..................................... TAATGGGACTGCTCTTTCAGCATCAACAAAACTAG 164006 37 100.0 36 ..................................... GATTTTGCTTGATACGATAACTACCAAGTTCTTTAG 163933 37 100.0 34 ..................................... ATTATTTTATAACCACGGTCTTCATCGTACTCGT 163862 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 99.4 36 GTCGCTTCTATTCTTTAGAAGCGGAATTAATGGAAAC # Left flank : AATTTGGACTTGAGCAAGTAGTCAACTTAACTTATCTATGTGTTATTTGGTTTGCCTATGTGATTTTCCTATCTTCTCTGAAAAATCCGAAATGTAAACAGCTATTCATGCGAATGACGAATTTTGCTGAAAATGTGAGCTACTGATTAAAACCGCGATCGCTTTCTCAGCTTTTGATCTGGGTTTACAATTTCAGGTAGGTTAGATAGCTGTGTGAGCGATCAAGATATTAGCTGATGATGTTTCACTGGCGTCAACCCGTGGGTGTTTGGCAATTTGATGCAATTTTTGCGCCTCAAAACCTTATGCTATCTGGCTTTGAGTATGATTACTGCAAAAAAAGGGTTGACGAAATTCTTAGAAGCTTTGCCTGTTATGCTTTTGAGGCGATTTGCACAAATCATCTCTTGACTACCCAAAGGCTGAAATGGTACTTTCTTTCTAGGTTGACGGAAAGTAGCCTGGAAACTCTTGCAATATCAAGGTTTCAGATGGCAGCT # Right flank : CTGGGGGTATATTGAAGTTTTCACCTTCTAAGTATTGTTGTAACTCGGATTGGGCGAAATCTTGATTTTCTCTGTTTTTTTCTACTTGTGTCATCATTGTATTTGTCTCCCATAGTGGGGGTTTAGAGAAAGGCGATCGCAGATTTTTGGCAGAGGGCGATCGCCTTTTTTTACTTATAGTAATGTATGAAATTATACTTGCAAAGCCCTAAAATGAAAAATAAACAGCATTTATTTGTAGGTTGTTTTGCAAGATAAAACCCTAACTTTGGCATCGAATTTATTAGGTATATCGTCAATAATTTCACCAAATAAAGCAAAAGTAAAAAGTTAAAAGGCAAAAGAAAGAAAAAGAAAAAGAAAATGGTTTGAAGCCCCTGTCTTGAAAAGTTTCCTACGGCGGGAAACCCGCCTACATAACTTTTCGCTAAATTTATTTATGGAACAAAATAAAAACATTTATTTCGAGATGCGTAGCACGAAAAATAATATGTCCTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTATTCTTTAGAAGCGGAATTAATGGAAAC # Alternate repeat : GTCGCTTCTATTCTTTAGAAGCGGAATTAATGGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 815670-817106 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 815670 37 100.0 36 ..................................... AAAAACTTGCTTGAACCCCTGCTCATTCGCCCCCCA 815743 37 100.0 38 ..................................... GCTTTCATAGCACCACGAAGTTTCCACCCTGTTTTTAG 815818 37 100.0 35 ..................................... GGATAGAGACTGGAATGCTGCTCGGAATATATTAG 815890 37 100.0 35 ..................................... TTGCTGCTAACATCATCAAGCTTTTCAATAACAGA 815962 37 100.0 34 ..................................... GTAACATTACTGCAAAACTAGCTTGTGACATTGC 816033 37 100.0 40 ..................................... AGATTTGGGAGGAATCCCGATCTAAGTGAGTTGGTCAAAG 816110 37 100.0 35 ..................................... AATCGCGATCGCAGACATAGACTATTTGACTCCAG 816182 37 100.0 37 ..................................... AGCTTGAGTGGCAGCCCAGGTGCAGCAGGGTATGCAG 816256 37 100.0 42 ..................................... AAAGGAATTCGAGACAGAAGCAGAATGTGAAGCAGCCGCAAG 816335 37 100.0 42 ..................................... AGTAGCGTTTACAGGCATGTAAATCCTCGGAACGAACTTATC 816414 37 100.0 34 ..................................... AACGACGACTAGCTTGCCGAGTCTTACGCGCTGA 816485 37 100.0 35 ..................................... TCACTACTGTAAAAGCTATAAGCAAAAACCTTGCC 816557 37 100.0 33 ..................................... TACATTTGTGGCAGCCAGCACTGCCACAGCAGA 816627 37 100.0 35 ..................................... TAGCGAACCGCCGCGAATCAAAGCGATCGCTCAAC 816699 37 100.0 39 ..................................... TTGGCAGCAGCTGCGGGAGTTGGGGGAGATGTGGCGCTA 816775 37 100.0 35 ..................................... AATCACCACATAGCCTTGTGCCCTAGCTTGTCGCT 816847 37 100.0 36 ..................................... GATGTTGGAAAGCTCAAGTATTTCTTGCTCGCTAAA 816920 37 100.0 40 ..................................... ACCGAGATTTACGGCGACCACTATGAGGAAGTAGAGCAGG 816997 37 100.0 36 ..................................... AGTGAAGCAAATAAAACTGTTGTTAGTCGCCCCGAA 817070 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 100.0 37 GTCACAATTAACTTAAATCCCTATTAGGGATTGAAAC # Left flank : TGCCATCAAGTTTTTTGATCTATGTCTTTAAAGAAAAGGGAATCGACAGTTTTCGTGGCAGTAAACCGGGCATGTACCCGGAAACTTTAAACGAGAGATTTAGGCTCCCACCTGGTTTAACCAGGTCATAAACTTAGGTAAAACGGCGTCGCGGTGAACTCAAAATTCTTAGCTCCCAAAGTTTACAAACTTGGGAGCTTTAATTATTTCCATAAAATATGCTTGTGAGTATCTCCTTTGCTAAAAACTGGCGTCAATCGGTAGGTGTTTTTCAGCAGGGATAAAATTTTGCACCTCAAACCCTTATCATCACTGGCTTTGAACCCTATTTCACCATTCAAGAGGTTGACGCCAAGTCTGTAACTCTTATCAACACTGCCTTTGAGCTTATTACGCTCTCCCCTACCTTGACAACCCAACACCTGAAAAGCTATATTGTCTCCAGATTGACGCAATTGAACCTTGAAAACCAAATATATCAAGCCTTGTGGACGCCATGA # Right flank : CGCCTAATTCTTCAGATCGTTGAAAAGCAACCTTGATTTTCGTCATAATGTAGTTGCCAAATTTTGGGCAGAGAGACGGTTCGTTTTCCGGGCGTTACCGCCTCTCTAGTGTTTATTTTAGTAATACTGAGTCATGTTTTTACATATTCAATAATACTTAAGCTACAATGGTATTGATCGAGTAATACTTAATGTGTTGTTCGGTAATTGTTCATGACACCAGACAAAGAAAAGTTAGCTCGAACTTCGATCACTGTTCCAGAGCAACTGTTGGCAGAGTTTAAACGGTATTGCGATTTACAGCGGCGCTCTGTGTCGGCTCAAATTACCCTACTTATGGAAGAGGCTTTGAAGCAGTCACAAAAAGATTCTGAATAAACGGAAATTAGTTACTTGGGGGTATCATCTGGAGGATGTCACTGCCAGGGTGAATACTTATATAGATATTAATTAGCTGAATCAATTAAATAAATGCTATGAGTGAAGAATTCTACAATCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATTAACTTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 982030-980659 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 982029 35 100.0 39 ................................... ACTTACATCATTTCTCTATAGCTCGGGTATTCGAGGAAA 981955 35 100.0 35 ................................... AAGTGGATGATTGCGTTGGGAATAGTGTTGAACTT 981885 35 100.0 40 ................................... TCGTACACCTACAACTATTACATATAGTTGCTATGAGAGA 981810 35 100.0 41 ................................... CCCTGCACAACCAAGAGGTGAATTAGCTACAAATCAGAGCG 981734 35 100.0 42 ................................... CAATGCAGGAATTGCGTTTGGACGGACTGCCAGCAACCAAGG 981657 35 100.0 37 ................................... CTCTTTCTTTGATAGCTCTAATTTTTCTGGTAGTTCA 981585 35 100.0 38 ................................... GATGACAGCCAATGGAGTTGCGGTTGTCAATAACTAAT 981512 35 100.0 37 ................................... GAAAGTAAGATTTGATTTTACTCCCACTGGCTCGAAA 981440 35 100.0 35 ................................... TCAAAAAAACTACAACAACCGAAGTTCAGTAGCTG 981370 35 100.0 40 ................................... TACTGCTAGATGGAAATGAAATCAAAGGTGTACTTATCTA 981295 35 100.0 43 ................................... TATTCTTTCTGAATCAATTGATGCACTTGCACTGTTGGCAAAA 981217 35 100.0 42 ................................... TCCTTAGTATTTGAATTAGTTTCCCCTTTTTGATTACCAACA 981140 35 100.0 39 ................................... TTCAAACACAAAAAGATGTGGATGCAAAGTAGCGCAAGA 981066 35 100.0 39 ................................... TTTAACCGATTTGGGTAACTTCTTGCAAAGTGGTATCAC 980992 35 100.0 39 ................................... ACCTCAAAAGATTGCATCATTTCCGGCTTCATTAAAAGC 980918 35 100.0 42 ................................... CCAAGAGGGTGCTAACTCGCACTTCCCTAAAACGGGAAGACC 980841 35 100.0 36 ................................... TTGACGAGTAAAAATTCTGGAGAAACCCAAGGAAAT 980770 35 100.0 42 ................................... AGCGTTTGCCATTAATGGCAGCGCTTCAGTGGACACCCAAGG 980693 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 19 35 100.0 39 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : CACAGCACTGCTTAAAAAAGCGATCGCCTGACAATAGCTTGATATCCCCTGAAAAATGCGATCGCCTGTGATTTCACAGCACTGCTTAAAAAAGCGATCGCCTGACAATAGCTTGATATCCCCTGAAAAATGCGATCGCCTGTGATTTCACAGCACTGCTTAAAAAAGCGATCGCCTGACAATAGCTTGATATCCCCTGAAAAATGCGATCGCCTGTGATTTCACAGCACTGTTTAAAAAAGCGATCGCCTGACAATAGCTTGATATCCCCTGAAAAATGCGATCGCCTGTGATTTCACAGCACTGACTTAAAAAAGCGATCGCCTGACAATAGCTTGATATCCCCTGAAAAATGCGATCGCCTGTGATTTCACAGCACTGCTTAAAAAAGCGATCGCCTGACAATAGCTTGATATCTCATGAAAAATGCGATCGCCTGTGATTTCACAGCAGAGATTTAAAACATCTTTGCCCAAAGCTGACCCAAACAATGCTATTTT # Right flank : TCTACTGTTACAGAAAGCTTACCAAATAAGGCTCACAGAACCGTAAAACTGAGGGGGGTATGTTTTACCTGTCAACAGAGCATAGTTATTGAGAATAACTACAGTCTCCAAGTAACTCAAACCCTTATACAGTAAGCGACCTGAGGGGGTCTACGAAACAATAAGCTTTTCAGCCTTTGTCCGACCCCCTCAGTTTACACTTCTTAACAAAATGGCTTCAGGAAACTAACCATTAAGTTAGAGGTAAACGGTATACACTTATAGAATTTTCAAGGTGCATGTGTTGGTATAAATAATACTATAGCACCCAGCAAAATGCAATCTCCCTATTAAGGTTTCCAAATCATTGGTCGATATACCTTCACCTCTCCCCTTAGACAAGCTACATACTCCCGCACTTGTAGCTCTAAACACCTACGAAAGCTCACTTTATATCCTGTATTTGGGTGCGTTAACTCAGATTGCAGCTTTTCTTCCCAGTGCTTGAGAAACTTTTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 1331255-1325066 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1331254 37 100.0 35 ..................................... TCATAGCGGGTCTTACATCTGCTGACATTGCTTCT 1331182 37 100.0 37 ..................................... ACAATCGCACATAACGCCCCCACAAAGGCTGATACAA 1331108 37 100.0 34 ..................................... AGGAAAGGGAGTGCCACAGCCCCAGCCCTCAACA 1331037 37 100.0 37 ..................................... CCTTCAAATGCGATGGAAGAAGCAACCCCAGTGGCAG 1330963 37 100.0 36 ..................................... ATGAAAACATCATGGACATCAAACCTACTCTGGGAA 1330890 37 100.0 35 ..................................... CGACATTTACCTTGTTGAGCCGCCTTGCTTCCTAG 1330818 37 100.0 37 ..................................... TTGTGAATGTATTGAATGTACCGCTTTTGATTGCTAC 1330744 37 100.0 38 ..................................... ATGTCTTTACCAAAGCCATCTGATTTCTTTTTAGAGTT 1330669 37 100.0 34 ..................................... TAATATATAATTATATATTACACATTACAATCAA 1330598 37 100.0 35 ..................................... TTGAAATTGTCCAAAATTGGAATTTTTACGTCCGA 1330526 37 100.0 37 ..................................... TAACAGTATCTCAAATGAATATATCTATGTGGCTGAA 1330452 37 100.0 36 ..................................... CAAAAGTATTCATTCTCAAGTTTTACAGGAAGTACC 1330379 37 100.0 33 ..................................... AAAGATATAGAGTAGTTCCCGATGTTGGTTTAG 1330309 37 100.0 36 ..................................... CATCATCACCCGTCACCGCCTTACACAGCAAGGATT 1330236 37 100.0 39 ..................................... ATCGCCCAGAAGATTTAGACTTTTGAGGAATATGAGGAG 1330160 37 100.0 37 ..................................... CTCTCCTTACGAGCCAGAAAAAATTAAGTCTGAAGAC 1330086 37 100.0 34 ..................................... AGTTTATCAGGGCATTGCTAGAGAGAGATGATGA 1330015 37 100.0 37 ..................................... TTATGTCGTCAAGTGTTGCCACAAAGTTGATACTTGA 1329941 37 100.0 36 ..................................... ACATTATTGTGTGCTGGGTATTAAAGATACTTTCTT 1329868 37 100.0 35 ..................................... TTGCAAAATTTCACTAGCAAGATGCCAAGTAATGC 1329796 37 100.0 37 ..................................... TTTGATAATATGCGTGATTCTTTTACGCAAGTATTTA 1329722 37 100.0 34 ..................................... TTTGCCTCTATGTCGTATGAAAGTTCCTGCTAAA 1329651 37 100.0 36 ..................................... CAGTTCCAGCCGATGTTCAAACTGCAGTGGACAATA 1329578 37 100.0 36 ..................................... TGCGCTATGGCTATTGCACGTTTGAAATTTGCTCAC 1329505 37 100.0 35 ..................................... AAGGCAATTTAGCAGATGATGCTGATTTTCAGCAT 1329433 37 100.0 37 ..................................... ATGCCGTGGCTGCTCAAGACTCAACATCTAAAGCTGA 1329359 37 100.0 35 ..................................... ACACTATGAATAAAACTCTCTACATCATCCGGGGT 1329287 37 100.0 34 ..................................... GCTGAGGACTTTTGTCTAATTGAAAAAGATTTAT 1329216 37 100.0 37 ..................................... GCTGTTTCTAATGGTGACTTCGATTTAATGAAGGAAA 1329142 37 100.0 35 ..................................... ATTTTAATTGGCGGCTATTCTCCGCAAATATGGAC 1329070 37 100.0 36 ..................................... TAAGTACGTAGTTTGAATAACCTACTTAGTGGTAGT 1328997 37 100.0 36 ..................................... AATGCAATTTGGCTAGCTTATATCTTGCTAGGAAAA 1328924 37 100.0 37 ..................................... CGAGTAGATAGAGTCTTTTTAACAATTTCACCGCAGC 1328850 37 100.0 37 ..................................... CCTTCTAATTGCACTGCCATATCAATTACTTCAGCAA 1328776 37 100.0 37 ..................................... TATTAATACTCTTGATCTCTGCAAGGATATCGCAGAG 1328702 37 100.0 36 ..................................... ATGTAGCTAGCTCTTGAAGTATTTCCCCGATGTTGT 1328629 37 100.0 37 ..................................... AAGGATACAAGGATTAGCAGTTTCCGCGATCGCCATT 1328555 37 100.0 35 ..................................... AATCTCCATAAGCAAATTCTGCCATCATTCTTTGA 1328483 37 100.0 36 ..................................... CTTATAGATGCAATGAACTTTTTATAAGTCACCTTT 1328410 37 100.0 35 ..................................... TCGAAGTAGACATATCACTACTCCCTGACTGGATG 1328338 37 100.0 35 ..................................... CGGTAGGGCATACCGGAACCTTTGCACTGGATGCA 1328266 37 100.0 36 ..................................... AACCACCTTTATGCCGCAAGGATTAATCATGGTTGA 1328193 37 100.0 36 ..................................... CGACATCACCACACTTTACCGTAAATAATTTCCTAA 1328120 37 100.0 35 ..................................... TGTATCATATACACTATCTTGGTCTTTGTCCTTTG 1328048 37 100.0 36 ..................................... TGTTCATAGATGGTCGCCGTAGCTGCGTACAGTTAC 1327975 37 100.0 38 ..................................... ATAGTCGGTTTCTTGAGCAGGTTTCCTTTACTGAGCGT 1327900 37 100.0 38 ..................................... GGGCGTATCAACCTGATCAGCTAAAGGGGTTTTGAGGA 1327825 37 100.0 37 ..................................... ATTCAGCCAAGAGCAGCAAAGTCTTTAGCCCAGATTT 1327751 37 100.0 45 ..................................... GGTCAAATGTAAACAAACGAGCATTAGTCTACTACGTAGGGTCAA 1327669 37 100.0 36 ..................................... GCTTTTTGATGAAATTTATAACCTTGCAGTCTCTGG 1327596 37 100.0 35 ..................................... TATAAAAAGGATTGGGATTAACTCTAGGGGCAAGG 1327524 37 100.0 37 ..................................... ATCAAGGAACCTACTCTTCTACAGTTGCTGGTAAAAA 1327450 37 100.0 35 ..................................... TTTAAAACCCCGCTTAACCGTGAATATATTTCTGA 1327378 37 100.0 36 ..................................... ATAAAGATGTTAAGTCAGCCCTGCGTAAAAATTTAA 1327305 37 100.0 35 ..................................... GCACTTTCACAAATCCAAACGAGCCATTAACCTGG 1327233 37 100.0 35 ..................................... GTAAATCAAGTCTGTGTACAGGGATTTGAGTGTTT 1327161 37 100.0 38 ..................................... CAAATCTGTGAAGCCGAAGGCATAAAAGTACTGTGGGT 1327086 37 97.3 33 .................T................... CTTTGCCGACAACATACTCAGCTTGATGTCCAT 1327016 37 100.0 41 ..................................... AAGCTCAAAAGACCGAGGCTGAGGTACAGACAGAGATTCAA 1326938 37 100.0 36 ..................................... TTCCTCAAACTGACGGTTACTACGCTGATCCGATAT 1326865 37 100.0 37 ..................................... TACCGCCTTTGCCATTAGTATTTATCCTTGACTTTGT 1326791 37 100.0 38 ..................................... GCTCTCAAGATGCCAGTTTCAATAGAAGATATCCACTA 1326716 37 100.0 32 ..................................... TACCAGAAAGTACCATTCGCAGTTGGTTGCGC 1326647 37 100.0 38 ..................................... TTTCTTGGCTATTAATACCAATAATCCACCATCACTAG 1326572 37 100.0 37 ..................................... GAGAATAGAAACTTACTGGATGTAAAACGATTAATTA 1326498 37 100.0 34 ..................................... ACCTTAGAGATGTCAGCGGCATGACAAGTATTAA 1326427 37 100.0 39 ..................................... CAATGGGGCAAGCTGCTTTGGACACAACCCGCGACTCTG 1326351 37 100.0 36 ..................................... TATCGGTATCAGGCATGTCTAATCCTAGTTGGTAAA 1326278 37 100.0 40 ..................................... TTCTGTTTATCGGGAGTCAGAGATGGAGTACGCCCGCCCC 1326201 37 100.0 34 ..................................... ATCCTTGAACCCCTGTTTCTCAGAAAAATTTTCT 1326130 37 100.0 35 ..................................... CTGAGTGTATTAACCTTTGCAGCTACTATGCACAA 1326058 37 100.0 34 ..................................... ATGGCATATTTAGTCATCCGGGTCTAAGTCTAAA 1325987 37 100.0 35 ..................................... TGATGTTTTTGAGGCGGGTTTTGTTGGGATTAAAA 1325915 37 100.0 46 ..................................... GCACTGGACTGCACAGTAGGAGGCGATCGCTGGCTGCGGCACAGTA 1325832 37 100.0 36 ..................................... CGTCACGGGGGTTGAGCCTGACAAGTTGCCCTAAGG 1325759 37 100.0 34 ..................................... GCCCAAGAAACAACAGGAGTAATCTGGGTCTGAA 1325688 37 100.0 38 ..................................... AATTAAATCCTTATTTGTGGAAGGTAGAAAAGGTATTA 1325613 37 100.0 36 ..................................... AGAACGTCACCACCTGGGGGCTAGAAGGCGAGAGCG 1325540 37 100.0 35 ..................................... GAGAAATAAGCCTCGACTTTCTTGATGGCATCCCG 1325468 37 100.0 33 ..................................... TCAGCCGAAGAACTCAGACAGCAATTGGGTGAG 1325398 37 100.0 40 ..................................... TCCCGCTGGGGACACAGCGATACGTGGAAGTCACTCCAGA 1325321 37 100.0 38 ..................................... GTGATATTGTGGGGAGTTCTATGGTCAGTCCCGCTCCT 1325246 37 97.3 35 .............A....................... ATATTTGCCGTTGTTAATCTCATTAAATCAAAAAT 1325174 37 100.0 35 ..................................... GTAATCAGTTTACGGCTAATGAATACTCTAGACAG 1325102 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 85 37 99.9 36 CTTTCAAATAAATGATTCCCGGCAACGGGATTGAAAC # Left flank : TGTTTTACCTCATAATTTACGATTTGCCGGATAGTAAAGCGGCGAATAAGCGGCGAACAAAGTTACATAAAATGCTTTCCGGTTATGGAACTTGGACACAGTACAGCGTTTTTGAATGTTTTTTGACTGCCATGCAGTTTGCTAAACTAAAGGTGCAAGTTGAAAACTTGATTAAACCAGCCGAAGATTCAGTACGCATCTATGTTTTGGATGCTGGAGCGGTGCGTAAGACTATTACCTACGGTTCTGAGCAACCTCGACAAGAAGAGACGATAATACTATGATGTTGATATAATGCTGGTAAAATTTTTTGGCAGGGCAAAGCACGGGCGAAAACCCCCCACCTCCCGCCAAATCGACAGAACCTTGACAATTCAATAGTTTCAGCCTTTTATGTATGAATGTAGAGCCTACTAATGAATCCCGGAAACGGACTTTTAAATTAGACCTGCCAAAATTGCTGGCGGGAATGGCTCTATATTTAGCTTCTGGCTGGCGGA # Right flank : TAATGAAGAAGGCGAAAATAACTAGTACTCAATACTTGCTACGCGCTGGTGTATGAATTAGGTATCATTTCTGCGCTAAGGCGATAGCGATTACCTGGCTTGTGTGTGTCCGAAATGGTAAATACCAAAGTTCCGTAAATATATGGGACTTTTAGATTATCTTCTTTTGCCAACCTTAAAACATCTTTTGCCAAGATATCTTGCTTTGCTAGTAACTTTATTATGTTGCTAACCTGTGTCGTTGTTAGATCGCTGACAAAAGGTATTCGACAGCGTTGCAAATTAAGATGCAACTCCGGCGATTCTAAATTAGAATTTTTCATTAAGGGGATACTTCCTTAAAAAAAGTACAAAGATATTGACAGCACAACAGCAATTTAATTTGTGCTTTCAAAAGTAAAAATTCAAACGAGCGTCAAAGGAACTGGTACTTTTTTTGACGCTTATTATTTTCAATAAATGTAGCACCTACTTAAGAATTTTGTCCAGACCAATATAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGATTCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 5 1341653-1343379 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================== ================== 1341653 37 100.0 38 ..................................... CTTTCGTTGCTTCTCTATCTTTTCAACCGTTCATCTAA 1341728 37 100.0 34 ..................................... AAGTAATCTACTGTGTACGCCGCTAATCGGTCAG 1341799 37 100.0 35 ..................................... TTTTATTGTCTGGCATTACTCCTCAGAAAGCTGAC 1341871 37 100.0 33 ..................................... TAAGACTCGCTATTAAGCTTGTTAACCGTGTAG 1341941 37 100.0 41 ..................................... TACTGTTTTCCCAGAAATAAGTGATAACAAATATGTATTAA 1342019 37 100.0 36 ..................................... GCTGCTGATGATATGCCTGGGTTATATATAGATGGT 1342092 37 100.0 37 ..................................... TACCCTTCGCGTTAAGGGTCTATTGGTGGCTATAGGG 1342166 37 100.0 37 ..................................... AGCCGAAAGAGCGTATATATCCACACGATAGACTAGC 1342240 37 100.0 37 ..................................... TCTTTTTACTAATAAGTAATACTTCGCAATCTGAGAA 1342314 37 100.0 37 ..................................... ATAACAATTGATTTAGCTGTTATCAGTACTAGCTGCA 1342388 37 100.0 36 ..................................... ATCTTTACAGAATCTTCATGAATAGATTCATCAAGA 1342461 37 100.0 35 ..................................... GTTGTCGGTTGTGCCCGTGGCGTTGATGCTTTCTT 1342533 37 100.0 36 ..................................... CTGACTTTTCGTGATTCGTAAGAACTACAGCAAATA 1342606 37 100.0 36 ..................................... TTTCGGCTTGTAAAGAGTTTGCAAAGATAGCCCGTA 1342679 37 100.0 35 ..................................... TAGTGAAAAAAATATTTAGGATTTTATGACTGAAA 1342751 37 100.0 34 ..................................... CATTCTTTACTGGATGATAAAGCAAAGCAAGCGG 1342822 37 100.0 36 ..................................... ATGTTTCCCCCCATGAGTATTACTATTAGACCACAG 1342895 37 100.0 36 ..................................... TAAACTCCTCTTCTGCCTGCTGTTGTCGCTTTGGGA 1342968 37 100.0 39 ..................................... TACAGCGTTTTTCTCTTCCTCTGTTTGGACAAGTCTAAT 1343044 37 100.0 37 ..................................... GATATACGCACCAAAAAAATATTGCATGTTAAATCAT 1343118 37 100.0 37 ..................................... TTTGGATAACCATTCATGGGCGCGATCGCCCATCAAT 1343192 37 100.0 111 ..................................... TGGTCATACCCGTGTACCGTACTAGCACAAAACTCGACTTTCAATTAAATGAAACTTGATAATAGTTATATCGTCCGGTGTTAGTCGAGATAGTACTAGCACAAAACTCGA 1343340 37 83.8 0 .........................A...T..CCC.T | ATT [1343364] ========== ====== ====== ====== ===================================== =============================================================================================================== ================== 23 37 99.3 40 CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : GATGATAGAGGACAAGCACATCCGAGCGGTGGCTTGAGATTGGGAGCCTTTTGAGCAACAATACATTTAGAGGTACACCCAAGGGGACAATTCTCAACTCCTGAGTTGAGTTGAGAGTAAAGAGGTTGTAAAAAAAGCTTCACCTTACTTACCCTGTGTTATTGCACCCAGTTTAGTACTGGTTTTGGGAATGTTGTAGTCAAAATTTGATATCAATGTTTTTTCTTTGCTTGACCGTGGATAACTTTTGTAAAGTTACATTTTGTCGCAGTGAGAAAATAAGCTTATAATCTGAACCAGAGCTAAATTTTTGGCATGGGAAAGCACGGGCGAAAACCCCCCACTTCCTGCCAAATCGCCAGAACCTTGACAAATCAATATTTTCAGCGTTTTGAGCATTCTTGGTTTAGCTGTAACCAACGGCTGAAATGGATTTTTAAAACAGTCCCGCCAAAATTGCTTTTAGAACTTGGTCTATAACTGGGTTGTGGCTCGCTAGG # Right flank : TATCTCAACTTGGGCAACCCTTATAGCGGTTCTCGGTTGTATGCAATACAAGGGGCGGGATCTCCCTGCCTACAGTTCTGTACGAATAATTACTTCAATCGTTTAGGTGTAATGGCTTCAGTTAATTTAGCAGGTAGGATTGTTTCTTTGATATCTATCTTTTTCGGGATGACCTTTTCTTCAAAATAGAAATCAGCAACCCGTTGTTGTTCAGCAATAATTGCAGGTGTCAGTTTTCTTAACCGATAAGTACGTCGGCGCGCCACCTTTTCTAAAACATCCTCCTCTATTTTTAATTCAGGTGCAAAGGCCTTAGCAACTTCTTTGGGATTCTTATCAGCCCATTCGCCTACCTTATCTGCTTCCTCTAAAAACACTCTTGCTAATTCCGGATTTTGGGTGATGAATGAACGTCTACCAAGATAAAACCCTCCCAGAGTGTTAATTCTCGCTGCATTTCTCAGATTACGAATAGGGATAATTTTTTCCACAAGGGCTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 2904492-2900656 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =========================================== ================== 2904491 34 100.0 36 .................................. TTCTGCAACGGGTGTCCCCAAGAAAGTTATCCAAGT 2904420 34 100.0 38 .................................. TCGGACCGTTGGCCCTCAGGGGGGCAGAAAGGTCAACA 2904347 34 100.0 42 .................................. TTTTTTGGAAGGAGGGCAAGCTTTTTCCAAGACATCCAACAA 2904270 34 100.0 34 .................................. TTGGGGTCTTCTTTCTCTTCGTCCTCCTCCTCCT 2904201 34 100.0 39 .................................. TGTCTTGTGCTGATGACATAAAGCAGAAACGCTGTATTA 2904127 34 100.0 35 .................................. TTTCCGTTCCTGCGCCTTGTTGCGGGTTTCCATTA 2904057 34 100.0 40 .................................. TGTCAGAAGAAACTACTTTGGCTGCACACACTTCAAAAAC 2903982 34 100.0 34 .................................. TTTTACGGACTCTTCAGAAACGATTTTCAAAGTT 2903913 34 100.0 38 .................................. TTCTGTCCCTGCGCCTTGTTGCCCAGCTTCTGTTTGCT 2903840 34 100.0 39 .................................. ATGGCGAGTGGCAACTTGGAGTTGCCCTTCAATACCCTC 2903766 34 100.0 37 .................................. CCTCCAGTCCATCCTACAAGATTAATAGTCCCATAAA 2903694 34 100.0 38 .................................. ATCTTGAAACGTTTGTTTCAATGCGTTCTTGAAATCTT 2903621 34 100.0 37 .................................. ATCAGCAACGGCTGATTGTTGTTTTGCGCCCAATCCA 2903549 34 100.0 32 .................................. AGTGGGTTGCGGGGGAACTTTGTTCCCTCAAT 2903482 34 100.0 37 .................................. CTTGCAATAGACCAAGCACCAAATTTTATGGTGCCAT 2903410 34 100.0 36 .................................. CAGTGTCCTGCAAAACCGATGAATTGAGAAAGAAGA 2903339 34 100.0 37 .................................. TGTTCTTCGCAGAACACAGTATTGCCATTTGGTAACT 2903267 34 100.0 43 .................................. TATATAAGGTTCGTTGTGAAATTCTCCCAACAGGTTACAAGAA 2903189 34 100.0 35 .................................. TCAACAATCACGCGACCGTTGCTGATTTGAACGCT 2903119 34 100.0 42 .................................. AAAATATAAAAAGCCAGCACACTACACGCGAGTGTGATGATT 2903042 34 100.0 38 .................................. CTTCGCCTTTCAGGCAAGGAGCGGAAAACTCCTTGTCA 2902969 34 100.0 39 .................................. ATCTTTGGTTTCGGGTTCAGACAAAAATTCTGATACCCA 2902895 34 100.0 37 .................................. AAGCACACTCAAGGGAGCGTGCCGCGTTCTCGAAGTC 2902823 34 100.0 36 .................................. CCAATGCGCCGAGTTCGGCGACTTGGTTGGAGACTT 2902752 34 100.0 40 .................................. GTTAAATCTTAATGAGTCAAAGAAAGTGCTTTTTGCACTT 2902677 34 100.0 42 .................................. CATTTCTGTCGTTTGGATTTCCTTGCACGTCTTTTTGAACTC 2902600 34 100.0 42 .................................. TGTTGATTACAGTGCCTGTTGGTTGCAAGATGAAATCAGAAA 2902523 34 100.0 36 .................................. TAAGTTGGTTTTTTTGATCTCCACCTTCCAAATAGT 2902452 34 100.0 41 .................................. TAAGTTGGTTTTTTAGAGGGGTAGAAATTCCCCTAAAAATT 2902376 34 100.0 38 .................................. CCGAGACGTCGCGCCGCACGGTGAAGTGCGGTGTTGCC 2902303 34 94.1 40 ......T.............G............. ATTTTGGATGCGTCGTATGCGATTCTCTTCAACGAGATCG 2902228 34 94.1 38 ......T.............G............. AATACTGTTAGCATTAGAATCTCTAATCAAGTTAACTG 2902155 34 94.1 37 ......T.............G............. TTATTTTCTGGTTTTTTGAGTTCAGTAAAAAACTCAA 2902083 34 94.1 39 ......T.............G............. CATTTTTTCCTAAGTCATCTCTGAACCACAGAATAAACA 2902009 34 94.1 38 ......T.............G............. CAATTCCATCATAAACTTCCTGAATTTTTTCCTCAGTA 2901936 34 94.1 38 ......T.............G............. CAGAATCTGTTCCATGCTTCATCGGTTGGAAGCCGATA 2901863 34 94.1 36 ......T.............G............. TAATATGCTGCTGCATTATTGTTCGGGTAAATCCTG 2901792 34 94.1 40 ......T.............G............. CGTTAAAGCGCCGGTAGAAACTTTAAAGTCTCCATCCCTG 2901717 34 94.1 39 ......T.............G............. ATGTGACAGCTTCCTACCCCAAGTTTGTGAACAGAAACG 2901643 34 94.1 38 ......T.............G............. CTTTCTCCTACACCTCTTACTAGAGGAAACTGAGCAGT 2901570 34 94.1 43 ......T.............G............. TTGTCGCCTATGGGTGGGTCTTGACAAGCCCCAGTTTCCAAGC 2901492 34 94.1 35 ......T.............G............. CTATTCACGAACCCTCCGAGTACCTTATTCCTCCA 2901422 34 94.1 38 ......T.............G............. CAGTTTCCAGAGGTCATCTCGCGGATGCCCTTCAACAG 2901349 34 94.1 38 ......T.............G............. CTATTATAATTCCAGCTAAAATAGCACGCAAGTTGGGT 2901276 34 94.1 40 ......T.............G............. TTCTCTCTCACCTCTGTCAGTGTCTGACCATTAGTGTTGA 2901201 34 97.1 42 ....................G............. TTGTTGGTGAGATTATTTCAGCTAGCACCTCCTCACCCAGTG 2901124 34 97.1 36 ....................G............. AGGTTTACAATCAGTTGATAGTCTTGAGATTTCAGA 2901053 34 97.1 37 ....................G............. AGTGTTAATGCCGGGTATAGAAATGTAAGAGTTTTTG 2900981 34 97.1 38 ....................G............. TGCACTTAGCAATATGTTTTTGTCTTTTTCTCCGAGCT 2900908 34 94.1 37 ......T.............G............. AAATGTTAAACCCTCCCTTGGTACAGTCTTCTGCATG 2900836 34 94.1 40 ......T.............G............. CATAAAGATCCGAAAGCTCCGTTGAGTGGAATTGACGCAC 2900761 34 97.1 37 ....................G............. AAAGGAAGAATTTCAAATACTTTAGCTCGATACCCCG 2900690 34 88.2 0 ......T.......................GTG. | C [2900664] ========== ====== ====== ====== ================================== =========================================== ================== 53 34 97.6 38 GTTTTAATTCCTTTACCCCTCAGGGGATGGAAAC # Left flank : ATACTGGACAGAAAGTAGTATACCGTCGCGCCCTTGAGTTGCAGGTACGGGAATACATTTCATGCTTGAAGGGTGAAGTGGAAGTGTATCGCCCGATGATTTGGGAGAAATAAAGTGTTCCACAAATAACCTTGCATAACCGGGGCGGTAGTAGAGAAAACTTATGTTAAGTTCGTGTTTGATGCTGTGAACAGTCAGAGTACTTTGTGATACCATGTAAAACAACAAACAGAACCTTGAAAACTTAATCTGACGTTTCCAAGTGAATCTCAAAGTACTTGTTTTGACTTTGTGTACGTAAATTTTTCGCGGGGGTCAGGCGATCCGTGAAACCCTGATGATTTCGTTGACCCCCGCGGAAAGCTTTCTCAGTAAGCTTTTGAGAAGGTTCTACTAGGACTAAATTCTCAATAAATGTAGCTTACTGACAGGTAAATTAGACCCCCCGCGAAAATGGGTATCTGTAACCCTGTCTGCATAAGGCTTCTAAATGAGTAGGG # Right flank : GACTATCAATCGCACATGAGAGTGAGTGAGTATCGAAATACTCCAGGCAAATGTCTATGCCAGTACCCGCCCGAAGGGGCATAGCGGGTAACTGCGATGTCTCAAAGCTATAGGGAAATGCGTAAAATCTGCCAGCCGAAAAGCGGACTTAACGCACTTGGTAAGACCATTGAAGGGTTAACGAGAGTGAATCTTCGACGAGGCACTTAAATTTATTTATGGGGATTATCTTTTTACTTTTTACTTTTTACTTTTTACTTTTTACTTCTTAATTCACCTCACTAACTGTGCGGCTGAGTTAAAAAACTGACGACACAGTCCCTTCGTAACTAAAAGTGTGGTCAGTAAGTTAGCTAGAGCCACCATAAACATGATCAAAATTTCGTAAGATACAGCATCTAGAGGATTGACTCCGCCTAATAACTGCCCTGTGGTGATTCCGGGTAGTGCAACCATACCAATAATCATCATTTGATTGAGGGTAGGAATCAATCCGGCTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTTTACCCCTCAGGGGATGGAAAC # Alternate repeat : GTTTTATTTCCTTTACCCCTGAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 3053059-3051419 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 3053058 35 100.0 37 ................................... TAGTGGACTTCCGTCCACTAGTAGTTCTTCTTCAATT 3052986 35 100.0 37 ................................... CTTTATCATTTAAGACAAAAGGGTTGTTTAGATAGCT 3052914 35 100.0 36 ................................... AATGGCGAGGTTGAGGCACTGAAGCATAGCTTCGTT 3052843 35 100.0 37 ................................... AAGGTTTCGGCATCATAATAGATGAAGCGGGAACGGT 3052771 35 100.0 42 ................................... TGGTAAAAAATGCTATTTGCGAGGCTAACGGCAGCCTCTTTG 3052694 35 100.0 38 ................................... AATTGAAAATTACTTATTGACGGATTCTGGTCTATAAA 3052621 35 100.0 39 ................................... CTTCTGATTGCTTGCGCAAGTAGCGCAAGCAATCGAACT 3052547 35 100.0 37 ................................... CTCTTTCAAGAGCTTTAGCACACTCTTTAGCGTAGCT 3052475 35 100.0 36 ................................... TTTTCACCCTGAACTTGTTGGTTTCTCAATGTGGGC 3052404 35 100.0 37 ................................... GTTTTAATGATTATAAAAATATAATTACTAAAACCAA 3052332 35 100.0 38 ................................... TTCTTTTTCAATTCCTAGCAAAAACTTCAAACCATCTT 3052259 35 100.0 38 ................................... TGTCGTCTGTGCAGAATTTTCTGCTTCTTTAGCTGCTG 3052186 35 100.0 41 ................................... AGTTGCCGTGGTTTTCAGAAAAATATCCGATACCACAAAGA 3052110 35 100.0 43 ................................... TTAACGTTGTATTACTTTCATCTCCCGCACCACTTCCGTTTTT 3052032 35 100.0 35 ................................... TACAGTGGGAGGAACGACCTCGGAAGCCGTGGCAT 3051962 35 100.0 36 ................................... TACTTAGCTGTGCATGGGCAGGGACGAACTACACGG 3051891 35 100.0 38 ................................... TATTGTCTTTAGGCTGGTTTTGTATTCCAGCTCCACCT 3051818 35 100.0 40 ................................... CGTCTAATAAGACACCTATAGCTATATGAATATCTCTTAT 3051743 35 100.0 37 ................................... TCCTGCCTTATTGCAGGCTGAAATATATTGTTGCATT 3051671 35 100.0 38 ................................... TTTAAGCGTATTTATCAACTTGCGTTGCGCAAGATGCG 3051598 35 100.0 38 ................................... CCGCTTGCATTCTTCTTCGTACAGCCCCGCCGCGCACT 3051525 35 100.0 37 ................................... TAACTTCCATTCTTTCCCCGACTGTGCGGGTTTTTAC 3051453 35 97.1 0 ..............................A.... | ========== ====== ====== ====== =================================== =========================================== ================== 23 35 99.9 38 GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Left flank : CATACTGGACAGAAAGTAGTATACCGTCGCGCCCTTGAGTTGCAGGTACGGGAATACATTTCATGCTTGAAGGGTGAAGTGGAAGTGTATCGCCCGATGATTTGGGAGAAATAAAGTGTTCCACAAATAACCTTGCATAACCGGGGCGGTAGTAGAGAAAACTTATGTTAAGTTCGTGTTTGATGCTGTGAACAGTCAGAGTACTTTGTGATACCATGTAAAACAACAAACAGAACCTTGAAAACTTAATCTGACGTTTCCAAGTGAATCTCAAAGTACTTGTTTTGACTTTGTGTACGTAAATTTTTCGCGGGGGTCAGGCGATCCGTGAAACCCTGATGATTTCGTTGACCCCCGCGGAAAGCTTTCTCAGTAAGCTTTTGAGAAGGTTCTACTAGGACTAAATTCTCAATAAATGTAGCTTACTGACAGGTAAATTAGACCCCCCGCGAAAATGGGTATCTGTAACCCTGTCTGCATAAGGCTTCTAAATGGGTAGG # Right flank : CTCTTTGTTTGAGAGGATGGAGTGCGATCGCATAATAGAAAGCAGGGCAAGATGGTTACAATCTAAACTAGAAGCAAACGAGGTCAGGTAATAATGGCTGTACCTACAGAAATTCGTAAAAGAGCGATCGCTTTACTCGAACAATTACCAAGAGAATCTTTAGTAAAGGCTGTCGAATTTTTAGAAGCCCTTTCTCACGAAGCTTTACAGGTATCAGAAGCACCAAACCCTCAAATCAGCGAAGCTGCTTTGCTGCAAATTATTCAAAACCGTCTGTCTCCTGAAGAACAAAATAGATTGGCTTATCTGCGTCAGCAAAACGAGATTGGAGTAATTACAGACACAGAGCATCAAGAGCTACTAATATACGTTGAGCGCGTCGAACAACAAGATGCGGAACGTGCAGAAGCATTGATAAAACTGGCTCAACTTCGCAAAGTTGATTTGAAAGTGCTAATTAACGAGTTCTTGCCTAAACACAGCAACGTCGCCTAATGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 8 3376307-3375025 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3376306 37 100.0 40 ..................................... ACTACGGACTACCTGCTTACCAACCAAGTATAGCAGCACC 3376229 37 100.0 35 ..................................... GTAGACAATGACTTGCTGCTGTGTACAGAAGCCAG 3376157 37 100.0 34 ..................................... TTGGCAATCTTTTTAATTTCCTGTCAGACCTTGG 3376086 37 100.0 38 ..................................... AAATCGCTACCCCTCCTCTAAAAATAGAAAAAGGCAAG 3376011 37 100.0 34 ..................................... TTTTCCGGGCGATCGCCCACAGACTGTAAATCTT 3375940 37 100.0 34 ..................................... GCAGCATATTGCTTAACTAATGGCAATGGACAGC 3375869 37 100.0 35 ..................................... ATTTACAGATTATATAGAGATAGGATCAACACCTT 3375797 37 100.0 35 ..................................... ATTTGACAAACACAATGGTAATGTTATTCGCTTGA 3375725 37 100.0 43 ..................................... CAGCCTTGCCCTTCATTTTGGCGATCGCTTTTGATGCTGCCGT 3375645 37 100.0 35 ..................................... AAGATTTTGCACTCAACAAACTAAGTTGATGCCAA 3375573 37 100.0 36 ..................................... TTCTTCCTCAGAGAAATCAAGGGACAGATTAGCTAA 3375500 37 100.0 34 ..................................... TCCATATCAACCCGCAAAATAAACCGTGAAACTT 3375429 37 100.0 39 ..................................... AGCCAAGTACGAAAGCAGAGAAGAAGCATACGAGTATAT 3375353 37 100.0 35 ..................................... TAGCCAGTGAAAAAGAGCTTGGAGATCACATGCGA 3375281 37 100.0 37 ..................................... CACATCAGTGAAGCCACGTTCAGCCTCTTCAGTAAAA 3375207 37 100.0 33 ..................................... TTGCCCGTCAAAGATGAGGCTTTGCCAATTATT 3375137 37 100.0 39 ..................................... TAGATCCCTCATCTTCTTTGAGAGACTTTTCAAATTCAG 3375061 37 94.6 0 ..........................A.........A | ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 99.7 36 GTTCCAATTAACTTAAATCCCTATCAGGGATTGAAAC # Left flank : TCAGAAGACAAGCGGCGCACGAAAATTCATAAAATTCTCAAATCTTACGGACAGTGGATGCAATATTCTGTATTTGAGTGCGAACTGACACCAACTCAATATGCTAAACTGCGATCGCGTTTAGCTAAAGTTATCAAACCTGACCAAGACAGCATTCGTTTTTACTCGCTCTGTGCTTGCTGTCAGGGCAAAATCGAGCGCATCGGCGGCGAAATGCCAATCGATACCACTGTCTTTTTTGCTTGAAACGGGTGTCAACCTGTAGGTGTTTTTTAGCAAGGATAAAATTTTGTCCCTCAAAACCTTATCCCCATTGACTTTGAACCCTATTCAACCACTGAAGAGGTTGACACCAAACCTGAAACCCTGATCACAACTGCTTTTTAGCTTATTTGCTACTTTCCTATCTTGACAAACCAGCACCTGAAAAGCTACCTTATTCCTAGGTTGACACCATTGAACCTTGAAAACCAAATACATCAAGCCTTCTGGATGCGGGC # Right flank : CCTCAGTATTACTACTGATGCACAATTTAAGGTAAGCTGGGTGAATGAATTACGAAACAGCTCGCAAAATCCTCATAGACCAGACAACAACAACCGAGGAAAACCCAGAAGCCCTGTTAGCGCGTATGCAGCAGGGAAGGCCACCCGTACCTGGTCAGATCACCTCGATTTTGTTAGCGTTGAAAGTCGTGTTTGAAGCCCTCAAAGAAGCCCCTACGCTAGACAGAGAACTAGCTTTTTCTTTGTATCAGTTAAGTATCAAGGCTCAACAGCTATTTGCGGCGGGACGCAAAGCTGGGATTGAGTGGCCACCACTGCTGAAGGAAGATTTACTCAGAATTTCTCTAGCAACTGAAAGTATTTTTTCTAATAGATGGCAAACCCCACCGGTTAGCGGCTTTGGGGTACAAGAAAAAGGCTGAAAGTTATCAGTTATCAGTTACTTGTACTGAGCGACTTGCCCTGACTTGTACCGACTTGTACTGAGCATAGCCGAAGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAACTTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 9 5067421-5070798 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 5067421 37 100.0 32 ..................................... TTCTTATCAAGATGCCGCGATCGCGGCATTAA 5067490 37 100.0 34 ..................................... AAGGTAGATTAGCGGAGTTTACCAAAGATATTAA 5067561 37 100.0 42 ..................................... TCAAAAAAAGGAATCACGATGAAAATTTTAATTTACTCTATG 5067640 37 100.0 34 ..................................... ATCAGTATCGTTACTATCATAATGGGTCGGATCA 5067711 37 100.0 37 ..................................... GCCCGTAAACACCTTATCTTCAATATCTAAAAACCTT 5067785 37 100.0 34 ..................................... GAAAGTGTATTCCATAACTGGATTTGTTGATCGA 5067856 37 100.0 35 ..................................... TTGCTGACTTTGAGATCATAGAATAGCGTGTCCTT 5067928 37 100.0 36 ..................................... TCTTTTTCTCTTTGAATTTCTTCAATTAACTCTTTA 5068001 37 100.0 34 ..................................... TGAAAAGTAGTATAGGCATAAGCAATGCTATGGC 5068072 37 100.0 34 ..................................... CAGAATTCCAAGCCAAGAAAAAAAAGTCAATCCT 5068143 37 100.0 38 ..................................... AATCCTAGTGCCGGATTGTATTCCCCAGACAGCGGCAG 5068218 37 100.0 41 ..................................... GCGTGGTGGACTCCCAGTGGAATACCTGGAAGACATGATTC 5068296 37 100.0 35 ..................................... TCTTGGCAGAAAAAATAGAAATTTTAAACTGCTGA 5068368 37 100.0 35 ..................................... CGGTGGTGGCGGTGGAATGCGACCCGAAAAAACTC 5068440 37 100.0 32 ..................................... TCCAATGTATGCCAACAAAATCACTAACGAAG 5068509 37 100.0 35 ..................................... TAGAAAATAAAAAGAACCTTCGTCTATAGTACTTC 5068581 37 100.0 36 ..................................... GTAGTAACTGATAAGCAGCCAGGAGGTATATTGAGT 5068654 37 100.0 33 ..................................... ATCCACAGCAGGTATATCTTAATCCCACCTCAG 5068724 37 100.0 35 ..................................... AGAGCCGTTGGTTGAGGTGTAACTACCACTGCTTG 5068796 37 100.0 41 ..................................... CCTGCTCTATTTGCGGGTAAAAAAGATGGTGAAGGAGCAAA 5068874 37 100.0 35 ..................................... AGAAACTTTATCTTCACCAGATAAAAAATAAACAT 5068946 37 100.0 36 ..................................... CACGTATTCATACCCATGTTGGGTGATGTTTCCCAA 5069019 37 100.0 35 ..................................... ACACTCGTTCCTGCGGATATTACTGGATTAATCAC 5069091 37 100.0 35 ..................................... CTTTGAAGCCAACGACCGTGACGACTTCACCACCG 5069163 37 100.0 36 ..................................... GGTGGTTGACAGTGGCTCGTTGTTTTCTGTCCCAAT 5069236 37 100.0 35 ..................................... ACTTCTCTTTCATCTCGGCCACCTAGCGCTTTCCG 5069308 37 100.0 35 ..................................... TTTCGGCATAAGAGGTAATGGCTCTGTCACGCTCG 5069380 37 100.0 34 ..................................... ATCCTTATCGGATATATAATCTTCAGGATTTATA 5069451 37 100.0 33 ..................................... ATCTATCAGGATATTTTTTACTTCTTCAACACT 5069521 37 100.0 34 ..................................... GAAATAGGTTTGCTTCCCCCAGAACTTTACTCAG 5069592 37 100.0 34 ..................................... TTCCTTATGGATTTGGTAAGCCTTTTGCTTTCCC 5069663 37 100.0 38 ..................................... ATACTTTGCCTTGATACTTTCGCCGTCGCTCCAAACTC 5069738 37 100.0 43 ..................................... TAGGCGATACCTTGAGCGATCCTAGGGCTTGGGGGTATATTGA 5069818 37 100.0 34 ..................................... AACACAGCAACTAGACGAGCAAACAGCATCCCTA 5069889 37 100.0 35 ..................................... TGGAGAAATAGGCTTGACAGACTGAGACGGCACCT 5069961 37 100.0 35 ..................................... ATGGCGTTTATCGTCGGTTCAGGAGAATATTTTTA 5070033 37 100.0 34 ..................................... TTTGTAGCGCTGGCATTCATCGACTACGAGCATG 5070104 37 100.0 35 ..................................... TCCGTACTCATAATCATCTCGGAAAATTTCCCGTT 5070176 37 100.0 36 ..................................... AAAAAATCTTAGAGAAACTAGGCATCCTCGACTTAG 5070249 37 100.0 38 ..................................... CCATCTGATTTAATCCCAGCAAGCTAGCTATCCGATTG 5070324 37 100.0 35 ..................................... TAGCTACGGGCGTGAAGAAGAACCGCAGATTAATT 5070396 37 100.0 36 ..................................... TTATTGGGATTCTCACGTTTTTGAATAAAAAAAGTA 5070469 37 100.0 38 ..................................... AGCAGCCATAGTGTTCCATTACGACAATTCCTAGAAGG 5070544 37 100.0 34 ..................................... TGAGCCAGTGCCGGGGTATTGATTGTTCCTGATG 5070615 37 100.0 38 ..................................... TCAAAGTTGGGTTTTTCGCTGTAATCCCATCTCTCAAA 5070690 37 100.0 35 ..................................... GCCGGAAACGCCATCAACAATATCAGTGGGGCTGC 5070762 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 47 37 100.0 36 GTTCCAATTAACTTAAATCCCTATCAGGGATTGAAAC # Left flank : TAATTGTCGCTACTGGTACGATTGATTTCCTCTCTTCCAAGGTGAGAGGATGGCTAGTTTAAATCTAGTAGAGCATGACAAATCAAAACTTCACCAACAATGTTCCTACAACCCAATATGGTTCAGTTAAGGATTTTTGGTATTGATTTTTAGGTATGCTAAACTTCCTCTAAGCTTGCTGTCAAGGCAACATTGAGCGCATGGCTGGCGAAATGCCAATCGCTACCACTGTCTTTTTTGATTAAAAATGGTGTCAACCAGTAGGTGTTTTTTAGCAAGGATAAAATTTTTTGCCTCAAAACCTTATCCCCACTAGCTTTGAACTCGATTCCACCATGCAAGAGGTTGACACCAAATCTAAAACCCTTATCACAATTGGTTTTCAGCGAATTTACCGTTCCTTCACCTTGACAACCCAATACCTAAAAAGCTATCTTGTCTCTAGGTTGACACTATTGAACCTTGAAAACCAAATACATCAAGCCTTCTGGACGCAGGCG # Right flank : CATTTTCAAAAAATAATTCCATACGATCGCCCCGGAGTCGAGTCACGCCATATTCAATGACATTACCTATTTGATCGACGTTTACCGACTCTGCTAACAGGATGGGTTGATTAAGTGACAGTTGCAACCACTGGGCATCTTGAGGCTGAACTAGACGTGCAGAAACACAAGTACTGCGGCGGATATGATCGCATCCATATATTTGCTGTAAAAACTGTGATATCGATTGCTGTTCTCGCAAAATCTTGATGTTCTTTGGCTCTAAAAAATCTGGAAACAGTTTTAAGGGAAAATATCCTGTACCCACACTAATTGGTTCTTCGTCTGCTAACCCCAGACGCTCAATTAAAGCTACCGGTTCACCAAGATTAATCTCTAGTGCTTTAGCAACAGCGGTGTCTGCAGGCACTTCTAAGACGCGGAGTAGTTGAAACCTTGCTCGCCAACCCTGTGCTTTTAGCGTCTGATTGTAGCGCACCCGGTTCCCAATGGCATAGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAACTTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 10 6531967-6528939 **** Predicted by CRISPRDetect 2.4 *** >NC_019682.1 Calothrix sp. PCC 7507, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 6531966 37 100.0 41 ..................................... TGGGAGAAGTACATCAAGGTTGCTTGCAAAAGTTGTCCTTA 6531888 37 100.0 35 ..................................... TGAGGCAGCTGTAGAAACAGATTTAACATACAGGT 6531816 37 100.0 38 ..................................... TAAATAGATAGCAGTGACAAGAGAATTTATCTTATTAC 6531741 37 100.0 35 ..................................... AAGAACTGCTTGAAGACCTTGTTTTCTGGAAGGAG 6531669 37 100.0 33 ..................................... TTCCATCATAAATCTTAACCTGCTAATAGAAGG 6531599 37 100.0 37 ..................................... CTTTAAAATCTTCTGTGATTTCGCCTTGCTCTGCGAG 6531525 37 100.0 36 ..................................... AGTACAACTGCTAAGAAGAAAGTTTGCAAGCCAGGG 6531452 37 100.0 35 ..................................... CGTTGCTACCAGACTTGGGTTGAACCTTGAGTATT 6531380 37 100.0 33 ..................................... TTTTTTCCTTGCCATAATCTCCCAGACTTCCTC 6531310 37 100.0 37 ..................................... ATGTCATCTGTGGCTAGCTTTAAAGATGTGTTGCAAA 6531236 37 100.0 34 ..................................... TTTGGTACTGATATCCCATGTTACTCATTAGCAT 6531165 37 100.0 31 ..................................... GCGTACACAGAATGTTTTTAAATACCTTAAG 6531097 37 100.0 34 ..................................... TTCTAGTGCAAATCGATAGCTCACAAAGCTACGG 6531026 37 100.0 38 ..................................... CATTTTGGTAGTGAAAAGAAGGGGATGCAGGCAGGGGA 6530951 37 100.0 42 ..................................... AGGCAAAACATATTCACAGAATAAATCTGGAATGGAAGCTAA 6530872 37 100.0 36 ..................................... GCGCTTGGATAAGCTGGGCGAAAGAGCAGGAAAATC 6530799 37 100.0 37 ..................................... CAACCAAAAAAAGAGCCATCAATACTGCACGCACTGA 6530725 37 100.0 35 ..................................... CCCGCATATTCGCCCTGGGCACCGCTGGGCTGATA 6530653 37 100.0 35 ..................................... TGATGGTGGTTTTCATGAGCTGCGAGAGCAATACT 6530581 37 100.0 33 ..................................... CCCGCTTGGCACTGCTCCGCTAGTGGCAGCTGC 6530511 37 100.0 34 ..................................... ACTAATACTTGCAGGGCGATGACTACCGCTTGGA 6530440 37 100.0 41 ..................................... TGAGCTTGATACTGTGCATGTTGTTCACACTCAATTCACTG 6530362 37 100.0 39 ..................................... TGGGGGGCGACTAAAGGGGGAAGTAGAAAGTATCAAATT 6530286 37 100.0 34 ..................................... TACACTGTTAGCAACAACGTACCCAGCTTCAATA 6530215 37 100.0 34 ..................................... GGGGTAAGCTTCTGTGATTACCTTGTAGCAAAGA 6530144 37 100.0 36 ..................................... TTTCTTTCCAAAAAACAAGGTCTTCGAGTAGTTCTT 6530071 37 100.0 33 ..................................... ATCTTCAAGCCGCAGTCCAGTATGTCATTTTGT 6530001 37 100.0 35 ..................................... GTCCAACCCTAGATCCTTAAGCTCTTTCTCTAGAT 6529929 37 100.0 35 ..................................... ACACAGATTACACCACAGATAAGGATCGAAAAAGA 6529857 37 100.0 38 ..................................... ATACTTGTTGCACTCAGTACACTTACTGAATGTTATAA 6529782 37 100.0 38 ..................................... ATAGTGGGTGCCGCTCTGTTTTTCAACTGTCTTGCAGA 6529707 37 100.0 35 ..................................... AGATAAAACGTAGCGTAAACGCTCATAGCAGGACT 6529635 37 100.0 35 ..................................... CTCAGGTAGCGCGGATGAAGTCAGTATCTCATATA 6529563 37 100.0 35 ..................................... GCTATATCGCAGCTTACCAACATACAACCTCACCT 6529491 37 100.0 42 ..................................... TTTTTAAATTGCTCCTTGCTGTGACAGCCATGTTTTAAGCCT 6529412 37 100.0 35 ..................................... AAACCGTTATCCAGCGATCGCGCAAACTCCAATAT 6529340 37 100.0 34 ..................................... AATCTTAGGGCGTATCCCTGGACTCCAGAGTTAT 6529269 37 100.0 41 ..................................... AGGATACTTTTCTGACAACAGCGCGCTACAAAAGCTATCAA 6529191 37 100.0 38 ..................................... AGCATGATTCCCTCACACGGGAACCACTCACCATCTAT 6529116 37 100.0 34 ..................................... CAGTTACACCCCAAACAATCAAATTGCACAGAAT 6529045 37 100.0 33 ..................................... AGGATTTATCCTTATGACGAAACTCTGCTTTAA 6528975 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 42 37 100.0 36 GTTGCAATTAACTTAAATCCCTATTAGGGATTGAAAC # Left flank : TTTGGGTGCAACTGCTTCCAGGCGATTCAACTCTTGTTCAGTCAGGATAATTTCGGTAGCTGCAATATTCTCCTCCAAGTAAGTGCGGCGTTTTGTACCAGGAATTGGCACAATATCTTCTCCTTGAGCCAAAAGCCATTGATCATTTTTCTTTGTTGACAGTTGACAGTCAACAGTGAATGGTTTACACAATAAAATATGCAACTTAAATGCCGCAGTCGCTTACCACCGTCTTTTCTGCTTGAGTTTGGTGTCAACCACTAGGTGTTTTTGAGCAAGGAGCAAATTTTGTGCCTCAAAACCATTACCTGACTAGCTTTGAACTCTATTCCACTATCAAAGATGTTGACACCAAATCTGAAACCCTTACTGCAAATGCTTTTGAGCTTATTTCCCACTCGGACACCTTGACAACCCAACCTCCCGAAAGCTATCTTATGTCCAGGTTGACGAAACTGCACCTTGAAAACCGAATATACCAAGCCTTCTGGATGCTGGCG # Right flank : TTTCAGCGAGCAGGTAGCACTAATAACGCTATATATTAAATTATGCTCCAAATTTCTCACAAAATCATCATCCCCGATAGCGAAATCGAAATTAGCGCGATTCGCTCCCAAGGTGCAGGTGGTCAAAATGTCAACAAGGTTTCTACAGCTATCCATTTACGCTTTGACATTGAGGCTTCATCATTACCCGCTTTCTACAAAGAACAGCTTTTGAATCTAAACGACCGACGCATTACTCAAGAGGGAGTCGTTGTGATCAAAGCCCAAGAACACCGCAGCCAAGAACAGAACCGAGAGGAGGCAATGCATAGACTTCAACAACTGGTTAAAAGCGCCATTACACTGAAGAAAAAACGCAAATCGACGAAACCAACTCGCAGCTCTCAAAAAAAACGTCTTGACAGTAAAACTAAGCGCGGACAAATTAAATCTACCAGAAGGCAGGTCATTGATTAAAATGCGATGGCTACGCCCGTCGCAGGTATCGCCTATATGAATTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTAACTTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //